RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 RASGRP4Q8TDF6 673 aa20.34■□□□□ 0.85
VIM-206ENST00000487938 MAPK8IP1Q9UQF2 711 aa20.34■□□□□ 0.85
VIM-206ENST00000487938 CCDC175P0C221 793 aa20.34■□□□□ 0.85
VIM-206ENST00000487938 FILIP1LQ4L180 1135 aa20.34■□□□□ 0.85
VIM-206ENST00000487938 PTF1AQ7RTS3 328 aa20.34■□□□□ 0.85
VIM-206ENST00000487938 CTAGE1Q96RT6 745 aa20.34■□□□□ 0.85
VIM-206ENST00000487938 TFAP4Q01664 338 aa20.33■□□□□ 0.85
VIM-206ENST00000487938 FAM98CQ17RN3 349 aaKnown RBP20.33■□□□□ 0.85
VIM-206ENST00000487938 STAG2Q8N3U4 1231 aa20.33■□□□□ 0.85
VIM-206ENST00000487938 CCDC12Q8WUD4 166 aaPredicted RBP20.33■□□□□ 0.85
VIM-206ENST00000487938 DYNLL2Q96FJ2 89 aa20.33■□□□□ 0.85
VIM-206ENST00000487938 MTMR7Q9Y216 660 aa20.33■□□□□ 0.85
VIM-206ENST00000487938 MRFAP1Q9Y605 127 aa20.33■□□□□ 0.85
VIM-206ENST00000487938 TOM1O60784 492 aa20.33■□□□□ 0.84
VIM-206ENST00000487938 SEC31AO94979 1220 aaKnown RBP20.33■□□□□ 0.84
VIM-206ENST00000487938 PPP2R3AQ06190 1150 aa20.33■□□□□ 0.84
VIM-206ENST00000487938 SLC51AQ86UW1 340 aa20.33■□□□□ 0.84
VIM-206ENST00000487938 NBPF5PQ86XG9 351 aaPredicted RBP20.33■□□□□ 0.84
VIM-206ENST00000487938 SETDB2Q96T68 719 aa20.33■□□□□ 0.84
VIM-206ENST00000487938 VPS16Q9H269 839 aa20.33■□□□□ 0.84
VIM-206ENST00000487938 KAT14Q9H8E8 782 aa20.33■□□□□ 0.84
VIM-206ENST00000487938 ARPP21Q9UBL0 812 aaPredicted RBP20.33■□□□□ 0.84
VIM-206ENST00000487938 ADGRG1Q9Y653 693 aa20.33■□□□□ 0.84
VIM-206ENST00000487938 DLEC1Q9Y238 1755 aa20.33■□□□□ 0.84
VIM-206ENST00000487938 FXR1P51114 621 aaKnown RBP eCLIP20.32■□□□□ 0.84
VIM-206ENST00000487938 KRT31Q15323 416 aa20.32■□□□□ 0.84
VIM-206ENST00000487938 TMCO3Q6UWJ1 677 aa20.32■□□□□ 0.84
VIM-206ENST00000487938 IL17RBQ9NRM6 502 aa20.32■□□□□ 0.84
VIM-206ENST00000487938 ARGLU1Q9NWB6 273 aaPredicted RBP20.32■□□□□ 0.84
VIM-206ENST00000487938 FAM205AQ6ZU69 1335 aa20.32■□□□□ 0.84
VIM-206ENST00000487938 SCN7AQ01118 1682 aa20.32■□□□□ 0.84
VIM-206ENST00000487938 PNMA6AP0CW24 399 aaPredicted RBP20.32■□□□□ 0.84
VIM-206ENST00000487938 TERF2Q15554 542 aa20.32■□□□□ 0.84
VIM-206ENST00000487938 SBK1Q52WX2 424 aa20.32■□□□□ 0.84
VIM-206ENST00000487938 TEX35Q5T0J7 233 aa20.32■□□□□ 0.84
VIM-206ENST00000487938 BLIDQ8IZY5 108 aa20.32■□□□□ 0.84
VIM-206ENST00000487938 N4BP3O15049 544 aa20.31■□□□□ 0.84
VIM-206ENST00000487938 GTPBP6O43824 516 aaPredicted RBP20.31■□□□□ 0.84
VIM-206ENST00000487938 MFAP3LO75121 409 aa20.31■□□□□ 0.84
VIM-206ENST00000487938 GYPCP04921 128 aa20.31■□□□□ 0.84
VIM-206ENST00000487938 KIF5BP33176 963 aa20.31■□□□□ 0.84
VIM-206ENST00000487938 TRAPPC10P48553 1259 aa20.31■□□□□ 0.84
VIM-206ENST00000487938 DZIP1Q86YF9 867 aaKnown RBP20.31■□□□□ 0.84
VIM-206ENST00000487938 C4orf32Q8N8J7 132 aa20.31■□□□□ 0.84
VIM-206ENST00000487938 ANKRD2Q9GZV1 360 aa20.31■□□□□ 0.84
VIM-206ENST00000487938 CASZ1Q86V15 1759 aa20.31■□□□□ 0.84
VIM-206ENST00000487938 GDAQ9Y2T3 454 aa20.3■□□□□ 0.84
VIM-206ENST00000487938 RNF225M0QZC1 329 aaPredicted RBP20.3■□□□□ 0.84
VIM-206ENST00000487938 ZRANB2O95218 330 aaKnown RBP eCLIP20.3■□□□□ 0.84
VIM-206ENST00000487938 KIF20AO95235 890 aa20.3■□□□□ 0.84
VIM-206ENST00000487938 USP5P45974 858 aa20.3■□□□□ 0.84
VIM-206ENST00000487938 PNMA1Q8ND90 353 aa20.3■□□□□ 0.84
VIM-206ENST00000487938 NELFBQ8WX92 580 aa20.3■□□□□ 0.84
VIM-206ENST00000487938 ZSWIM4Q9H7M6 989 aa20.3■□□□□ 0.84
VIM-206ENST00000487938 TAB2Q9NYJ8 693 aa20.3■□□□□ 0.84
VIM-206ENST00000487938 USP17L3A6NCW0 530 aa20.29■□□□□ 0.84
VIM-206ENST00000487938 USP17L4A6NCW7 530 aa20.29■□□□□ 0.84
VIM-206ENST00000487938 RPN1P04843 607 aaKnown RBP20.29■□□□□ 0.84
VIM-206ENST00000487938 PLA2G4AP47712 749 aa20.29■□□□□ 0.84
VIM-206ENST00000487938 TYW1BQ6NUM6 668 aa20.29■□□□□ 0.84
VIM-206ENST00000487938 USP17L1Q7RTZ2 530 aa20.29■□□□□ 0.84
VIM-206ENST00000487938 NAA15Q9BXJ9 866 aaKnown RBP20.29■□□□□ 0.84
VIM-206ENST00000487938 NYXQ9GZU5 481 aa20.29■□□□□ 0.84
VIM-206ENST00000487938 RWDD2AQ9UIY3 292 aa20.29■□□□□ 0.84
VIM-206ENST00000487938 TPM1P09493 284 aa20.29■□□□□ 0.84
VIM-206ENST00000487938 PAK1Q13153 545 aa20.29■□□□□ 0.84
VIM-206ENST00000487938 PLIN2Q99541 437 aa20.29■□□□□ 0.84
VIM-206ENST00000487938 PP2D1A8MPX8 630 aa20.28■□□□□ 0.84
VIM-206ENST00000487938 ABL1P00519 1130 aa20.28■□□□□ 0.84
VIM-206ENST00000487938 CALML3P27482 149 aa20.28■□□□□ 0.84
VIM-206ENST00000487938 PRCPP42785 496 aa20.28■□□□□ 0.84
VIM-206ENST00000487938 COPB1P53618 953 aaKnown RBP20.28■□□□□ 0.84
VIM-206ENST00000487938 ZNF658Q5TYW1 1059 aaPredicted RBP20.28■□□□□ 0.84
VIM-206ENST00000487938 C12orf60Q5U649 245 aa20.28■□□□□ 0.84
VIM-206ENST00000487938 SH3RF3Q8TEJ3 882 aaPredicted RBP20.28■□□□□ 0.84
VIM-206ENST00000487938 MKNK2Q9HBH9 465 aa20.28■□□□□ 0.84
VIM-206ENST00000487938 LIMA1Q9UHB6 759 aaKnown RBP20.28■□□□□ 0.84
VIM-206ENST00000487938 NARFQ9UHQ1 456 aa20.28■□□□□ 0.84
VIM-206ENST00000487938 PCDHA4Q9UN74 947 aa20.28■□□□□ 0.84
VIM-206ENST00000487938 COL5A3P25940 1745 aaPredicted RBP20.28■□□□□ 0.84
VIM-206ENST00000487938 LONP1P36776 959 aaKnown RBP20.28■□□□□ 0.84
VIM-206ENST00000487938 STAT6P42226 847 aa20.28■□□□□ 0.84
VIM-206ENST00000487938 RSRC2Q7L4I2 434 aaKnown RBP20.28■□□□□ 0.84
VIM-206ENST00000487938 CNGA4Q8IV77 575 aa20.28■□□□□ 0.84
VIM-206ENST00000487938 ACRBPQ8NEB7 543 aa20.28■□□□□ 0.84
VIM-206ENST00000487938 NGLY1Q96IV0 654 aa20.28■□□□□ 0.84
VIM-206ENST00000487938 PDS5AQ29RF7 1337 aaKnown RBP20.27■□□□□ 0.84
VIM-206ENST00000487938 KCNJ18B7U540 433 aa20.27■□□□□ 0.84
VIM-206ENST00000487938 ZPR1O75312 459 aa20.27■□□□□ 0.84
VIM-206ENST00000487938 TM4SF1P30408 202 aa20.27■□□□□ 0.84
VIM-206ENST00000487938 KCNJ12Q14500 433 aa20.27■□□□□ 0.84
VIM-206ENST00000487938 VPS72Q15906 364 aa20.27■□□□□ 0.84
VIM-206ENST00000487938 TCP11X2Q5H9J9 407 aa20.27■□□□□ 0.84
VIM-206ENST00000487938 ZNF569Q5MCW4 686 aa20.27■□□□□ 0.84
VIM-206ENST00000487938 ARL6IP4Q66PJ3 421 aaKnown RBP20.27■□□□□ 0.84
VIM-206ENST00000487938 RASGRP2Q7LDG7 609 aa20.27■□□□□ 0.84
VIM-206ENST00000487938 C8orf37Q96NL8 207 aa20.27■□□□□ 0.84
VIM-206ENST00000487938 NUP88Q99567 741 aaPredicted RBP20.27■□□□□ 0.84
VIM-206ENST00000487938 LRRC10BA6NIK2 292 aa20.27■□□□□ 0.83
VIM-206ENST00000487938 DIXDC1Q155Q3 683 aa20.27■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms