RNA–Protein interactions for RNA: ENST00000486618.1

HDAC3-209, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 711 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-209ENST00000486618 SRRDQ9UH36 339 aa8.42□□□□□ -1.06
HDAC3-209ENST00000486618 CHMP3Q9Y3E7 222 aa8.42□□□□□ -1.06
HDAC3-209ENST00000486618 AOX1Q06278 1338 aa8.42□□□□□ -1.06
HDAC3-209ENST00000486618 CENPFP49454 3210 aa8.41□□□□□ -1.06
HDAC3-209ENST00000486618 HIBADHP31937 336 aaKnown RBP8.41□□□□□ -1.06
HDAC3-209ENST00000486618 PSMC4P43686 418 aa8.41□□□□□ -1.06
HDAC3-209ENST00000486618 CRKP46108 304 aa8.41□□□□□ -1.06
HDAC3-209ENST00000486618 GJA8P48165 433 aa8.41□□□□□ -1.06
HDAC3-209ENST00000486618 HDLBPQ00341 1268 aaKnown RBP8.41□□□□□ -1.06
HDAC3-209ENST00000486618 PPIL2Q13356 520 aa8.41□□□□□ -1.06
HDAC3-209ENST00000486618 FKBP5Q13451 457 aaPredicted RBP8.41□□□□□ -1.06
HDAC3-209ENST00000486618 UBE4AQ14139 1066 aa8.41□□□□□ -1.06
HDAC3-209ENST00000486618 MTFR1Q15390 333 aa8.41□□□□□ -1.06
HDAC3-209ENST00000486618 TWISTNBQ3B726 338 aaPredicted RBP8.41□□□□□ -1.06
HDAC3-209ENST00000486618 RNF20Q5VTR2 975 aa8.41□□□□□ -1.06
HDAC3-209ENST00000486618 DCAF15Q66K64 600 aa8.41□□□□□ -1.06
HDAC3-209ENST00000486618 C17orf99Q6UX52 265 aa8.41□□□□□ -1.06
HDAC3-209ENST00000486618 G2E3Q7L622 706 aa8.41□□□□□ -1.06
HDAC3-209ENST00000486618 SHISA4Q96DD7 197 aa8.41□□□□□ -1.06
HDAC3-209ENST00000486618 RNF208Q9H0X6 261 aa8.41□□□□□ -1.06
HDAC3-209ENST00000486618 CCL5P13501 91 aa8.4□□□□□ -1.06
HDAC3-209ENST00000486618 ERVK-9P63128 1117 aa8.4□□□□□ -1.06
HDAC3-209ENST00000486618 PPATQ06203 517 aa8.4□□□□□ -1.06
HDAC3-209ENST00000486618 ANKRD23Q86SG2 305 aa8.4□□□□□ -1.06
HDAC3-209ENST00000486618 FAM83AQ86UY5 434 aa8.4□□□□□ -1.06
HDAC3-209ENST00000486618 TBC1D22AQ8WUA7 517 aa8.4□□□□□ -1.06
HDAC3-209ENST00000486618 WRNIP1Q96S55 665 aa8.4□□□□□ -1.06
HDAC3-209ENST00000486618 PRO3102Q9H379 93 aa8.4□□□□□ -1.06
HDAC3-209ENST00000486618 SNCAIPQ9Y6H5 919 aa8.4□□□□□ -1.06
HDAC3-209ENST00000486618 ARAP2Q8WZ64 1704 aa8.4□□□□□ -1.07
HDAC3-209ENST00000486618 AK9Q5TCS8 1911 aa8.39□□□□□ -1.07
HDAC3-209ENST00000486618 MYPNQ86TC9 1320 aa8.39□□□□□ -1.07
HDAC3-209ENST00000486618 ZSWIM8A7E2V4 1837 aa8.39□□□□□ -1.07
HDAC3-209ENST00000486618 ZBTB7BO15156 539 aaPredicted RBP8.39□□□□□ -1.07
HDAC3-209ENST00000486618 FRAT2O75474 233 aaPredicted RBP8.39□□□□□ -1.07
HDAC3-209ENST00000486618 FARP2O94887 1054 aaPredicted RBP8.39□□□□□ -1.07
HDAC3-209ENST00000486618 GYG1P46976 350 aa8.39□□□□□ -1.07
HDAC3-209ENST00000486618 FOXO4P98177 505 aa8.39□□□□□ -1.07
HDAC3-209ENST00000486618 FKBP1CQ5VVH2 108 aa8.39□□□□□ -1.07
HDAC3-209ENST00000486618 LMBR1LQ6UX01 489 aa8.39□□□□□ -1.07
HDAC3-209ENST00000486618 UBE2Q1Q7Z7E8 422 aa8.39□□□□□ -1.07
HDAC3-209ENST00000486618 VPS37DQ86XT2 251 aa8.39□□□□□ -1.07
HDAC3-209ENST00000486618 FTSJ3Q8IY81 847 aaKnown RBP8.39□□□□□ -1.07
HDAC3-209ENST00000486618 SREK1Q8WXA9 508 aaKnown RBP8.39□□□□□ -1.07
HDAC3-209ENST00000486618 ZKSCAN4Q969J2 545 aaPredicted RBP8.39□□□□□ -1.07
HDAC3-209ENST00000486618 TEKT1Q969V4 418 aa8.39□□□□□ -1.07
HDAC3-209ENST00000486618 FAM84BQ96KN1 310 aaPredicted RBP8.39□□□□□ -1.07
HDAC3-209ENST00000486618 MRIQ9BWK5 157 aa8.39□□□□□ -1.07
HDAC3-209ENST00000486618 ZNF341Q9BYN7 854 aa8.39□□□□□ -1.07
HDAC3-209ENST00000486618 STK17AQ9UEE5 414 aa8.39□□□□□ -1.07
HDAC3-209ENST00000486618 CPA4Q9UI42 421 aa8.39□□□□□ -1.07
HDAC3-209ENST00000486618 SUGT1Q9Y2Z0 365 aa8.39□□□□□ -1.07
HDAC3-209ENST00000486618 A0A1B0GUL6 1792 aa8.39□□□□□ -1.07
HDAC3-209ENST00000486618 MAST3O60307 1309 aa8.38□□□□□ -1.07
HDAC3-209ENST00000486618 PDHXO00330 501 aa8.38□□□□□ -1.07
HDAC3-209ENST00000486618 SGPL1O95470 568 aa8.38□□□□□ -1.07
HDAC3-209ENST00000486618 LORP23490 312 aaPredicted RBP8.38□□□□□ -1.07
HDAC3-209ENST00000486618 SCTRP47872 440 aa8.38□□□□□ -1.07
HDAC3-209ENST00000486618 FCGRTP55899 365 aa8.38□□□□□ -1.07
HDAC3-209ENST00000486618 DDX10Q13206 875 aaKnown RBP8.38□□□□□ -1.07
HDAC3-209ENST00000486618 CCDC155Q8N6L0 562 aa8.38□□□□□ -1.07
HDAC3-209ENST00000486618 GOLGA6L2Q8N9W4 650 aaPredicted RBP8.38□□□□□ -1.07
HDAC3-209ENST00000486618 U2AF1L4Q8WU68 220 aaKnown RBP8.38□□□□□ -1.07
HDAC3-209ENST00000486618 TSR2Q969E8 191 aaKnown RBP8.38□□□□□ -1.07
HDAC3-209ENST00000486618 ZNF594Q96JF6 807 aaPredicted RBP8.38□□□□□ -1.07
HDAC3-209ENST00000486618 PRM3Q9NNZ6 103 aa8.38□□□□□ -1.07
HDAC3-209ENST00000486618 SLC35F4A4IF30 521 aa8.37□□□□□ -1.07
HDAC3-209ENST00000486618 CTGFP29279 349 aa8.37□□□□□ -1.07
HDAC3-209ENST00000486618 CACNB3P54284 484 aa8.37□□□□□ -1.07
HDAC3-209ENST00000486618 CAVIN4Q5BKX8 364 aa8.37□□□□□ -1.07
HDAC3-209ENST00000486618 FAM9BQ8IZU0 186 aa8.37□□□□□ -1.07
HDAC3-209ENST00000486618 SGSM3Q96HU1 749 aa8.37□□□□□ -1.07
HDAC3-209ENST00000486618 ZDHHC15Q96MV8 337 aa8.37□□□□□ -1.07
HDAC3-209ENST00000486618 PARK7Q99497 189 aaKnown RBP8.37□□□□□ -1.07
HDAC3-209ENST00000486618 UBA5Q9GZZ9 404 aa8.37□□□□□ -1.07
HDAC3-209ENST00000486618 C9orf78Q9NZ63 289 aaPredicted RBP8.37□□□□□ -1.07
HDAC3-209ENST00000486618 KCNH4Q9UQ05 1017 aa8.37□□□□□ -1.07
HDAC3-209ENST00000486618 PCDHB11Q9Y5F2 797 aa8.37□□□□□ -1.07
HDAC3-209ENST00000486618 RPAP1Q9BWH6 1393 aaPredicted RBP8.36□□□□□ -1.07
HDAC3-209ENST00000486618 MROH5Q6ZUA9 1318 aa8.36□□□□□ -1.07
HDAC3-209ENST00000486618 GRM8O00222 908 aa8.36□□□□□ -1.07
HDAC3-209ENST00000486618 ADCY3O60266 1144 aa8.36□□□□□ -1.07
HDAC3-209ENST00000486618 TFRCP02786 760 aaKnown RBP8.36□□□□□ -1.07
HDAC3-209ENST00000486618 DEKP35659 375 aaKnown RBP8.36□□□□□ -1.07
HDAC3-209ENST00000486618 FAM193AP78312 1265 aa8.36□□□□□ -1.07
HDAC3-209ENST00000486618 PRKCZQ05513 592 aa8.36□□□□□ -1.07
HDAC3-209ENST00000486618 CHAF1AQ13111 956 aaPredicted RBP8.36□□□□□ -1.07
HDAC3-209ENST00000486618 MCM6Q14566 821 aa8.36□□□□□ -1.07
HDAC3-209ENST00000486618 BEND3Q5T5X7 828 aa8.36□□□□□ -1.07
HDAC3-209ENST00000486618 HHIPL2Q6UWX4 724 aa8.36□□□□□ -1.07
HDAC3-209ENST00000486618 MIGA2Q7L4E1 593 aa8.36□□□□□ -1.07
HDAC3-209ENST00000486618 FBXO33Q7Z6M2 555 aa8.36□□□□□ -1.07
HDAC3-209ENST00000486618 MICAL1Q8TDZ2 1067 aa8.36□□□□□ -1.07
HDAC3-209ENST00000486618 MORC4Q8TE76 937 aa8.36□□□□□ -1.07
HDAC3-209ENST00000486618 GDPD2Q9HCC8 539 aa8.36□□□□□ -1.07
HDAC3-209ENST00000486618 CEP126Q9P2H0 1117 aa8.36□□□□□ -1.07
HDAC3-209ENST00000486618 BRCA2P51587 3418 aa8.36□□□□□ -1.07
HDAC3-209ENST00000486618 MGAMO43451 1857 aa8.36□□□□□ -1.07
HDAC3-209ENST00000486618 IL16Q14005 1332 aa8.35□□□□□ -1.07
HDAC3-209ENST00000486618 ADGRA2Q96PE1 1338 aa8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms