RNA–Protein interactions for RNA: ENST00000485994.5

VPS50-218, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 573 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-218ENST00000485994 CHD1LQ86WJ1 897 aa8.37□□□□□ -1.07
VPS50-218ENST00000485994 PLEKHM2Q8IWE5 1019 aa8.37□□□□□ -1.07
VPS50-218ENST00000485994 TRMT44Q8IYL2 757 aaKnown RBP8.37□□□□□ -1.07
VPS50-218ENST00000485994 MB21D1Q8N884 522 aa8.37□□□□□ -1.07
VPS50-218ENST00000485994 SLC44A5Q8NCS7 719 aa8.37□□□□□ -1.07
VPS50-218ENST00000485994 FBXO22Q8NEZ5 403 aa8.37□□□□□ -1.07
VPS50-218ENST00000485994 EXOC6Q8TAG9 804 aa8.37□□□□□ -1.07
VPS50-218ENST00000485994 USP6NLQ92738 828 aa8.37□□□□□ -1.07
VPS50-218ENST00000485994 ARHGEF10LQ9HCE6 1279 aa8.37□□□□□ -1.07
VPS50-218ENST00000485994 TXNRD2Q9NNW7 524 aa8.37□□□□□ -1.07
VPS50-218ENST00000485994 ADAMTS5Q9UNA0 930 aa8.37□□□□□ -1.07
VPS50-218ENST00000485994 ZSWIM8A7E2V4 1837 aa8.37□□□□□ -1.07
VPS50-218ENST00000485994 RLFQ13129 1914 aa8.37□□□□□ -1.07
VPS50-218ENST00000485994 MKI67P46013 3256 aaKnown RBP8.36□□□□□ -1.07
VPS50-218ENST00000485994 CYP2D7A0A087X1C5 515 aa8.36□□□□□ -1.07
VPS50-218ENST00000485994 IGKV6D-41A0A0C4DH26 115 aa8.36□□□□□ -1.07
VPS50-218ENST00000485994 M0R2C6 588 aa8.36□□□□□ -1.07
VPS50-218ENST00000485994 MPHOSPH10O00566 681 aaKnown RBP8.36□□□□□ -1.07
VPS50-218ENST00000485994 STRNO43815 780 aa8.36□□□□□ -1.07
VPS50-218ENST00000485994 CNMDO75829 334 aa8.36□□□□□ -1.07
VPS50-218ENST00000485994 FGRP09769 529 aa8.36□□□□□ -1.07
VPS50-218ENST00000485994 EN2P19622 333 aaPredicted RBP8.36□□□□□ -1.07
VPS50-218ENST00000485994 RASA1P20936 1047 aa8.36□□□□□ -1.07
VPS50-218ENST00000485994 GJA8P48165 433 aa8.36□□□□□ -1.07
VPS50-218ENST00000485994 CCNA1P78396 465 aa8.36□□□□□ -1.07
VPS50-218ENST00000485994 ZNF444Q8N0Y2 327 aaPredicted RBP8.36□□□□□ -1.07
VPS50-218ENST00000485994 SH3TC2Q8TF17 1288 aa8.36□□□□□ -1.07
VPS50-218ENST00000485994 FEZ1Q99689 392 aa8.36□□□□□ -1.07
VPS50-218ENST00000485994 NUDT12Q9BQG2 462 aa8.36□□□□□ -1.07
VPS50-218ENST00000485994 FSD1Q9BTV5 496 aa8.36□□□□□ -1.07
VPS50-218ENST00000485994 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.36□□□□□ -1.07
VPS50-218ENST00000485994 RPAP3Q9H6T3 665 aaPredicted RBP8.36□□□□□ -1.07
VPS50-218ENST00000485994 VCPKMTQ9H867 229 aa8.36□□□□□ -1.07
VPS50-218ENST00000485994 MKNK2Q9HBH9 465 aa8.36□□□□□ -1.07
VPS50-218ENST00000485994 EPB41L4AQ9HCS5 686 aaPredicted RBP8.36□□□□□ -1.07
VPS50-218ENST00000485994 ANAPC4Q9UJX5 808 aa8.36□□□□□ -1.07
VPS50-218ENST00000485994 GREB1LQ9C091 1923 aaPredicted RBP8.36□□□□□ -1.07
VPS50-218ENST00000485994 ZNFX1Q9P2E3 1918 aaKnown RBP8.36□□□□□ -1.07
VPS50-218ENST00000485994 BRCA2P51587 3418 aa8.36□□□□□ -1.07
VPS50-218ENST00000485994 CEP290O15078 2479 aa8.35□□□□□ -1.07
VPS50-218ENST00000485994 SPDYE16A6NNV3 312 aaPredicted RBP8.35□□□□□ -1.07
VPS50-218ENST00000485994 SMIM22K7EJ46 135 aa8.35□□□□□ -1.07
VPS50-218ENST00000485994 WDR46O15213 610 aaKnown RBP8.35□□□□□ -1.07
VPS50-218ENST00000485994 FOXP2O15409 715 aa8.35□□□□□ -1.07
VPS50-218ENST00000485994 APPP05067 770 aa8.35□□□□□ -1.07
VPS50-218ENST00000485994 SLC3A2P08195 630 aaKnown RBP8.35□□□□□ -1.07
VPS50-218ENST00000485994 HOXC6P09630 235 aa8.35□□□□□ -1.07
VPS50-218ENST00000485994 EEF2P13639 858 aaKnown RBP8.35□□□□□ -1.07
VPS50-218ENST00000485994 NT5C2P49902 561 aa8.35□□□□□ -1.07
VPS50-218ENST00000485994 ICA1Q05084 483 aa8.35□□□□□ -1.07
VPS50-218ENST00000485994 PDE4BQ07343 736 aa8.35□□□□□ -1.07
VPS50-218ENST00000485994 MCMDC2Q4G0Z9 681 aa8.35□□□□□ -1.07
VPS50-218ENST00000485994 PPP4R3BQ5MIZ7 849 aa8.35□□□□□ -1.07
VPS50-218ENST00000485994 MORN1Q5T089 497 aa8.35□□□□□ -1.07
VPS50-218ENST00000485994 SHCBP1Q8NEM2 672 aa8.35□□□□□ -1.07
VPS50-218ENST00000485994 NEDD1Q8NHV4 660 aa8.35□□□□□ -1.07
VPS50-218ENST00000485994 SOCS4Q8WXH5 440 aa8.35□□□□□ -1.07
VPS50-218ENST00000485994 SEC62Q99442 399 aaKnown RBP8.35□□□□□ -1.07
VPS50-218ENST00000485994 LNPKQ9C0E8 428 aa8.35□□□□□ -1.07
VPS50-218ENST00000485994 PLXNB2O15031 1838 aa8.35□□□□□ -1.07
VPS50-218ENST00000485994 ZMYM6O95789 1325 aa8.34□□□□□ -1.07
VPS50-218ENST00000485994 SLC15A5A6NIM6 579 aa8.34□□□□□ -1.07
VPS50-218ENST00000485994 MINDY4BA8MYZ0 360 aa8.34□□□□□ -1.07
VPS50-218ENST00000485994 HIP1O00291 1037 aa8.34□□□□□ -1.07
VPS50-218ENST00000485994 SGPL1O95470 568 aa8.34□□□□□ -1.07
VPS50-218ENST00000485994 IGHA2P01877 340 aa8.34□□□□□ -1.07
VPS50-218ENST00000485994 CCL5P13501 91 aa8.34□□□□□ -1.07
VPS50-218ENST00000485994 NOVP48745 357 aa8.34□□□□□ -1.07
VPS50-218ENST00000485994 TDO2P48775 406 aa8.34□□□□□ -1.07
VPS50-218ENST00000485994 MFAP1P55081 439 aaKnown RBP8.34□□□□□ -1.07
VPS50-218ENST00000485994 MTFR1Q15390 333 aa8.34□□□□□ -1.07
VPS50-218ENST00000485994 ZYXQ15942 572 aaKnown RBP8.34□□□□□ -1.07
VPS50-218ENST00000485994 KIAA1755Q5JYT7 1200 aa8.34□□□□□ -1.07
VPS50-218ENST00000485994 MAP3K21Q5TCX8 1036 aa8.34□□□□□ -1.07
VPS50-218ENST00000485994 GPR142Q7Z601 462 aa8.34□□□□□ -1.07
VPS50-218ENST00000485994 PLEKHH3Q7Z736 793 aa8.34□□□□□ -1.07
VPS50-218ENST00000485994 UBE2Q1Q7Z7E8 422 aa8.34□□□□□ -1.07
VPS50-218ENST00000485994 ABRAQ8N0Z2 381 aa8.34□□□□□ -1.07
VPS50-218ENST00000485994 RNF208Q9H0X6 261 aa8.34□□□□□ -1.07
VPS50-218ENST00000485994 NAPBQ9H115 298 aa8.34□□□□□ -1.07
VPS50-218ENST00000485994 GOPCQ9HD26 462 aa8.34□□□□□ -1.07
VPS50-218ENST00000485994 PAK6Q9NQU5 681 aaPredicted RBP8.34□□□□□ -1.07
VPS50-218ENST00000485994 MTMR4Q9NYA4 1195 aa8.34□□□□□ -1.07
VPS50-218ENST00000485994 BTBD7Q9P203 1132 aa8.34□□□□□ -1.07
VPS50-218ENST00000485994 BIN2Q9UBW5 565 aaPredicted RBP8.34□□□□□ -1.07
VPS50-218ENST00000485994 PCDHGA4Q9Y5G9 962 aa8.34□□□□□ -1.07
VPS50-218ENST00000485994 RPTORQ8N122 1335 aa8.33□□□□□ -1.08
VPS50-218ENST00000485994 F5H6K3 240 aa8.33□□□□□ -1.08
VPS50-218ENST00000485994 ORC4O43929 436 aa8.33□□□□□ -1.08
VPS50-218ENST00000485994 PLA2G6O60733 806 aa8.33□□□□□ -1.08
VPS50-218ENST00000485994 SLC25A27O95847 323 aa8.33□□□□□ -1.08
VPS50-218ENST00000485994 TTLL1O95922 423 aa8.33□□□□□ -1.08
VPS50-218ENST00000485994 FGAP02671 866 aa8.33□□□□□ -1.08
VPS50-218ENST00000485994 HMGCRP04035 888 aa8.33□□□□□ -1.08
VPS50-218ENST00000485994 FDX1P10109 184 aa8.33□□□□□ -1.08
VPS50-218ENST00000485994 HSPD1P10809 573 aaKnown RBP8.33□□□□□ -1.08
VPS50-218ENST00000485994 PCP11498 1178 aaKnown RBP8.33□□□□□ -1.08
VPS50-218ENST00000485994 SDSP20132 328 aa8.33□□□□□ -1.08
VPS50-218ENST00000485994 PTPREP23469 700 aa8.33□□□□□ -1.08
VPS50-218ENST00000485994 RGS2P41220 211 aa8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms