RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 ZNF281Q9Y2X9 895 aa6.67□□□□□ -1.34
VPS41-213ENST00000485955 C9IYK1 514 aa6.66□□□□□ -1.34
VPS41-213ENST00000485955 PRAMEF1O95521 474 aa6.66□□□□□ -1.34
VPS41-213ENST00000485955 HPXP02790 462 aa6.66□□□□□ -1.34
VPS41-213ENST00000485955 IMPDH2P12268 514 aa6.66□□□□□ -1.34
VPS41-213ENST00000485955 ZNF648Q5T619 568 aaPredicted RBP6.66□□□□□ -1.34
VPS41-213ENST00000485955 RBBP8NLQ8NC74 664 aaPredicted RBP6.66□□□□□ -1.34
VPS41-213ENST00000485955 DAGLBQ8NCG7 672 aa6.66□□□□□ -1.34
VPS41-213ENST00000485955 CCDC120Q96HB5 630 aa6.66□□□□□ -1.34
VPS41-213ENST00000485955 C19orf44Q9H6X5 657 aa6.66□□□□□ -1.34
VPS41-213ENST00000485955 LRRC10BA6NIK2 292 aa6.65□□□□□ -1.34
VPS41-213ENST00000485955 GLI1P08151 1106 aa6.65□□□□□ -1.34
VPS41-213ENST00000485955 SOX9P48436 509 aa6.65□□□□□ -1.34
VPS41-213ENST00000485955 AUHQ13825 339 aaKnown RBP6.65□□□□□ -1.34
VPS41-213ENST00000485955 TIGD5Q53EQ6 642 aa6.65□□□□□ -1.34
VPS41-213ENST00000485955 TMEM67Q5HYA8 995 aa6.65□□□□□ -1.34
VPS41-213ENST00000485955 UNC5AQ6ZN44 842 aa6.65□□□□□ -1.34
VPS41-213ENST00000485955 LSRQ86X29 649 aaPredicted RBP6.65□□□□□ -1.34
VPS41-213ENST00000485955 ABHD4Q8TB40 342 aa6.65□□□□□ -1.34
VPS41-213ENST00000485955 RASGRP4Q8TDF6 673 aa6.65□□□□□ -1.34
VPS41-213ENST00000485955 GPRASP2Q96D09 838 aa6.65□□□□□ -1.34
VPS41-213ENST00000485955 TM9SF2Q99805 663 aa6.65□□□□□ -1.34
VPS41-213ENST00000485955 FOXP3Q9BZS1 431 aa6.65□□□□□ -1.34
VPS41-213ENST00000485955 MKRN2Q9H000 416 aaKnown RBP6.65□□□□□ -1.34
VPS41-213ENST00000485955 ACBD3Q9H3P7 528 aa6.65□□□□□ -1.34
VPS41-213ENST00000485955 SUCOQ9UBS9 1254 aaKnown RBP6.65□□□□□ -1.34
VPS41-213ENST00000485955 CCDC9Q9Y3X0 531 aaKnown RBP6.65□□□□□ -1.34
VPS41-213ENST00000485955 SIGLEC6O43699 453 aa6.64□□□□□ -1.35
VPS41-213ENST00000485955 GJA8P48165 433 aa6.64□□□□□ -1.35
VPS41-213ENST00000485955 MLANAQ16655 118 aa6.64□□□□□ -1.35
VPS41-213ENST00000485955 PRR23BQ6ZRT6 265 aa6.64□□□□□ -1.35
VPS41-213ENST00000485955 PPFIBP1Q86W92 1011 aa6.64□□□□□ -1.35
VPS41-213ENST00000485955 TAB3Q8N5C8 712 aaPredicted RBP6.64□□□□□ -1.35
VPS41-213ENST00000485955 ZNF655Q8N720 491 aaPredicted RBP6.64□□□□□ -1.35
VPS41-213ENST00000485955 LINC01599Q8WXQ3 324 aa6.64□□□□□ -1.35
VPS41-213ENST00000485955 MYLIPQ8WY64 445 aa6.64□□□□□ -1.35
VPS41-213ENST00000485955 DHRS1Q96LJ7 313 aa6.64□□□□□ -1.35
VPS41-213ENST00000485955 G6PC3Q9BUM1 346 aa6.64□□□□□ -1.35
VPS41-213ENST00000485955 GFOD1Q9NXC2 390 aa6.64□□□□□ -1.35
VPS41-213ENST00000485955 TMEM82A0PJX8 343 aa6.63□□□□□ -1.35
VPS41-213ENST00000485955 MEIS1O00470 390 aa6.63□□□□□ -1.35
VPS41-213ENST00000485955 SHOXO15266 292 aa6.63□□□□□ -1.35
VPS41-213ENST00000485955 C8AP07357 584 aa6.63□□□□□ -1.35
VPS41-213ENST00000485955 GUCY2CP25092 1073 aa6.63□□□□□ -1.35
VPS41-213ENST00000485955 RPL10P27635 214 aaKnown RBP6.63□□□□□ -1.35
VPS41-213ENST00000485955 MESP2Q0VG99 397 aa6.63□□□□□ -1.35
VPS41-213ENST00000485955 TDRD10Q5VZ19 366 aaKnown RBP6.63□□□□□ -1.35
VPS41-213ENST00000485955 ZPBP2Q6X784 338 aa6.63□□□□□ -1.35
VPS41-213ENST00000485955 PDZD8Q8NEN9 1154 aa6.63□□□□□ -1.35
VPS41-213ENST00000485955 KCNK12Q9HB15 430 aa6.63□□□□□ -1.35
VPS41-213ENST00000485955 LTBP3Q9NS15 1303 aa6.63□□□□□ -1.35
VPS41-213ENST00000485955 CHST7Q9NS84 486 aa6.63□□□□□ -1.35
VPS41-213ENST00000485955 FBXL21Q9UKT6 434 aa6.63□□□□□ -1.35
VPS41-213ENST00000485955 TCFL5Q9UL49 500 aa6.63□□□□□ -1.35
VPS41-213ENST00000485955 RAC2P15153 192 aa6.62□□□□□ -1.35
VPS41-213ENST00000485955 CTSKP43235 329 aa6.62□□□□□ -1.35
VPS41-213ENST00000485955 PMS1P54277 932 aaKnown RBP6.62□□□□□ -1.35
VPS41-213ENST00000485955 COL9A2Q14055 689 aaPredicted RBP6.62□□□□□ -1.35
VPS41-213ENST00000485955 BBS9Q3SYG4 887 aa6.62□□□□□ -1.35
VPS41-213ENST00000485955 AXDND1Q5T1B0 1012 aaPredicted RBP6.62□□□□□ -1.35
VPS41-213ENST00000485955 DCAF15Q66K64 600 aa6.62□□□□□ -1.35
VPS41-213ENST00000485955 RNF111Q6ZNA4 994 aa6.62□□□□□ -1.35
VPS41-213ENST00000485955 LINC00116Q8NCU8 138 aa6.62□□□□□ -1.35
VPS41-213ENST00000485955 TGIF2Q9GZN2 237 aa6.62□□□□□ -1.35
VPS41-213ENST00000485955 FAM86C1Q9NVL1 165 aa6.62□□□□□ -1.35
VPS41-213ENST00000485955 PCDHB12Q9Y5F1 795 aa6.62□□□□□ -1.35
VPS41-213ENST00000485955 NOTOA8MTQ0 251 aa6.61□□□□□ -1.35
VPS41-213ENST00000485955 FKTNO75072 461 aa6.61□□□□□ -1.35
VPS41-213ENST00000485955 FARP2O94887 1054 aaPredicted RBP6.61□□□□□ -1.35
VPS41-213ENST00000485955 EFEMP2O95967 443 aa6.61□□□□□ -1.35
VPS41-213ENST00000485955 TP53P04637 393 aaPredicted RBP6.61□□□□□ -1.35
VPS41-213ENST00000485955 SYPP08247 313 aa6.61□□□□□ -1.35
VPS41-213ENST00000485955 GIPRP48546 466 aa6.61□□□□□ -1.35
VPS41-213ENST00000485955 PCBP3P57721 371 aaKnown RBP6.61□□□□□ -1.35
VPS41-213ENST00000485955 ZNF124Q15973 351 aa6.61□□□□□ -1.35
VPS41-213ENST00000485955 MPZL3Q6UWV2 235 aa6.61□□□□□ -1.35
VPS41-213ENST00000485955 WAPLQ7Z5K2 1190 aa6.61□□□□□ -1.35
VPS41-213ENST00000485955 CCDC144CPQ8IYA2 1237 aa6.61□□□□□ -1.35
VPS41-213ENST00000485955 C7orf61Q8IZ16 206 aa6.61□□□□□ -1.35
VPS41-213ENST00000485955 DHX38Q92620 1227 aaKnown RBP6.61□□□□□ -1.35
VPS41-213ENST00000485955 SPATA32Q96LK8 384 aa6.61□□□□□ -1.35
VPS41-213ENST00000485955 RNF32Q9H0A6 362 aa6.61□□□□□ -1.35
VPS41-213ENST00000485955 FAM53CQ9NYF3 392 aa6.61□□□□□ -1.35
VPS41-213ENST00000485955 PSPNO60542 156 aa6.6□□□□□ -1.35
VPS41-213ENST00000485955 NASPP49321 788 aaPredicted RBP6.6□□□□□ -1.35
VPS41-213ENST00000485955 GALK1P51570 392 aa6.6□□□□□ -1.35
VPS41-213ENST00000485955 EIF6P56537 245 aaKnown RBP6.6□□□□□ -1.35
VPS41-213ENST00000485955 NR0B2Q15466 257 aa6.6□□□□□ -1.35
VPS41-213ENST00000485955 OXR1Q8N573 874 aa6.6□□□□□ -1.35
VPS41-213ENST00000485955 SHDQ96IW2 340 aa6.6□□□□□ -1.35
VPS41-213ENST00000485955 CRBNQ96SW2 442 aa6.6□□□□□ -1.35
VPS41-213ENST00000485955 SRRTQ9BXP5 876 aaKnown RBP6.6□□□□□ -1.35
VPS41-213ENST00000485955 KRTAP9-9Q9BYP9 154 aa6.6□□□□□ -1.35
VPS41-213ENST00000485955 KRTAP9-4Q9BYQ2 154 aa6.6□□□□□ -1.35
VPS41-213ENST00000485955 ZNF214Q9UL59 606 aaPredicted RBP6.6□□□□□ -1.35
VPS41-213ENST00000485955 SSU72P8A0A1W2PR75 194 aa6.59□□□□□ -1.35
VPS41-213ENST00000485955 FITM1A5D6W6 292 aa6.59□□□□□ -1.35
VPS41-213ENST00000485955 ANKRD39Q53RE8 183 aa6.59□□□□□ -1.35
VPS41-213ENST00000485955 SYTL4Q96C24 671 aaPredicted RBP6.59□□□□□ -1.35
VPS41-213ENST00000485955 SHISA4Q96DD7 197 aa6.59□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 72.6 ms