RNA–Protein interactions for RNA: ENST00000485618.1

SF3A1-208, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 593 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-208ENST00000485618 NEDD4P46934 1319 aa9.68□□□□□ -0.86
SF3A1-208ENST00000485618 MYPNQ86TC9 1320 aa9.68□□□□□ -0.86
SF3A1-208ENST00000485618 A0A1W2PRG0 241 aa9.68□□□□□ -0.86
SF3A1-208ENST00000485618 SMIM22K7EJ46 135 aa9.68□□□□□ -0.86
SF3A1-208ENST00000485618 TLR2O60603 784 aa9.68□□□□□ -0.86
SF3A1-208ENST00000485618 CALM1P0DP23 149 aa9.68□□□□□ -0.86
SF3A1-208ENST00000485618 CALM2P0DP24 149 aa9.68□□□□□ -0.86
SF3A1-208ENST00000485618 CALM3P0DP25 149 aa9.68□□□□□ -0.86
SF3A1-208ENST00000485618 BMP3P12645 472 aa9.68□□□□□ -0.86
SF3A1-208ENST00000485618 VCAM1P19320 739 aa9.68□□□□□ -0.86
SF3A1-208ENST00000485618 NOVP48745 357 aa9.68□□□□□ -0.86
SF3A1-208ENST00000485618 CCNA1P78396 465 aa9.68□□□□□ -0.86
SF3A1-208ENST00000485618 IKQ13123 557 aaPredicted RBP9.68□□□□□ -0.86
SF3A1-208ENST00000485618 TMEM67Q5HYA8 995 aa9.68□□□□□ -0.86
SF3A1-208ENST00000485618 GPAT2Q6NUI2 795 aa9.68□□□□□ -0.86
SF3A1-208ENST00000485618 NFXL1Q6ZNB6 911 aa9.68□□□□□ -0.86
SF3A1-208ENST00000485618 CATSPERGQ6ZRH7 1159 aa9.68□□□□□ -0.86
SF3A1-208ENST00000485618 CCDC84Q86UT8 332 aaPredicted RBP9.68□□□□□ -0.86
SF3A1-208ENST00000485618 FAM160B2Q86V87 743 aa9.68□□□□□ -0.86
SF3A1-208ENST00000485618 SIAH1Q8IUQ4 282 aa9.68□□□□□ -0.86
SF3A1-208ENST00000485618 FAM43AQ8N2R8 423 aa9.68□□□□□ -0.86
SF3A1-208ENST00000485618 KCNB2Q92953 911 aa9.68□□□□□ -0.86
SF3A1-208ENST00000485618 ZNF333Q96JL9 665 aa9.68□□□□□ -0.86
SF3A1-208ENST00000485618 TMEM47Q9BQJ4 181 aa9.68□□□□□ -0.86
SF3A1-208ENST00000485618 NBPF3Q9H094 633 aa9.68□□□□□ -0.86
SF3A1-208ENST00000485618 RPAP3Q9H6T3 665 aaPredicted RBP9.68□□□□□ -0.86
SF3A1-208ENST00000485618 IL17RBQ9NRM6 502 aa9.68□□□□□ -0.86
SF3A1-208ENST00000485618 FRMD4AQ9P2Q2 1039 aaPredicted RBP9.68□□□□□ -0.86
SF3A1-208ENST00000485618 CYP46A1Q9Y6A2 500 aa9.68□□□□□ -0.86
SF3A1-208ENST00000485618 PTCH2Q9Y6C5 1203 aa9.68□□□□□ -0.86
SF3A1-208ENST00000485618 TNKSO95271 1327 aa9.67□□□□□ -0.86
SF3A1-208ENST00000485618 CCDC69A6NI79 296 aa9.67□□□□□ -0.86
SF3A1-208ENST00000485618 PRC1O43663 620 aa9.67□□□□□ -0.86
SF3A1-208ENST00000485618 PLA2G6O60733 806 aa9.67□□□□□ -0.86
SF3A1-208ENST00000485618 ZBED4O75132 1171 aa9.67□□□□□ -0.86
SF3A1-208ENST00000485618 FLOT1O75955 427 aa9.67□□□□□ -0.86
SF3A1-208ENST00000485618 NDUFB10O96000 172 aa9.67□□□□□ -0.86
SF3A1-208ENST00000485618 MYCP01106 439 aaPredicted RBP9.67□□□□□ -0.86
SF3A1-208ENST00000485618 GNRH1P01148 92 aa9.67□□□□□ -0.86
SF3A1-208ENST00000485618 HOXD10P28358 340 aa9.67□□□□□ -0.86
SF3A1-208ENST00000485618 KIF5BP33176 963 aa9.67□□□□□ -0.86
SF3A1-208ENST00000485618 COPB2P35606 906 aa9.67□□□□□ -0.86
SF3A1-208ENST00000485618 LIFRP42702 1097 aa9.67□□□□□ -0.86
SF3A1-208ENST00000485618 GNAQP50148 359 aa9.67□□□□□ -0.86
SF3A1-208ENST00000485618 TRAF1Q13077 416 aa9.67□□□□□ -0.86
SF3A1-208ENST00000485618 SHROOM1Q2M3G4 852 aaPredicted RBP9.67□□□□□ -0.86
SF3A1-208ENST00000485618 GPATCH4Q5T3I0 446 aaKnown RBP9.67□□□□□ -0.86
SF3A1-208ENST00000485618 NBPF11Q86T75 865 aa9.67□□□□□ -0.86
SF3A1-208ENST00000485618 SPICE1Q8N0Z3 855 aa9.67□□□□□ -0.86
SF3A1-208ENST00000485618 LRRC47Q8N1G4 583 aaKnown RBP9.67□□□□□ -0.86
SF3A1-208ENST00000485618 ENAHQ8N8S7 591 aaPredicted RBP9.67□□□□□ -0.86
SF3A1-208ENST00000485618 PRPF38AQ8NAV1 312 aaKnown RBP9.67□□□□□ -0.86
SF3A1-208ENST00000485618 PNMA1Q8ND90 353 aa9.67□□□□□ -0.86
SF3A1-208ENST00000485618 GPRC5AQ8NFJ5 357 aa9.67□□□□□ -0.86
SF3A1-208ENST00000485618 CHMP4CQ96CF2 233 aa9.67□□□□□ -0.86
SF3A1-208ENST00000485618 JAKMIP1Q96N16 626 aaKnown RBP9.67□□□□□ -0.86
SF3A1-208ENST00000485618 TM6SF1Q9BZW5 370 aa9.67□□□□□ -0.86
SF3A1-208ENST00000485618 ASCC2Q9H1I8 757 aaPredicted RBP9.67□□□□□ -0.86
SF3A1-208ENST00000485618 CWC22Q9HCG8 908 aaKnown RBP9.67□□□□□ -0.86
SF3A1-208ENST00000485618 RABGAP1Q9Y3P9 1069 aa9.67□□□□□ -0.86
SF3A1-208ENST00000485618 SIPA1L1O43166 1804 aa9.67□□□□□ -0.86
SF3A1-208ENST00000485618 MKI67P46013 3256 aaKnown RBP9.67□□□□□ -0.86
SF3A1-208ENST00000485618 ZSWIM8A7E2V4 1837 aa9.66□□□□□ -0.86
SF3A1-208ENST00000485618 ATAD5Q96QE3 1844 aa9.66□□□□□ -0.86
SF3A1-208ENST00000485618 CCDC196A0A1B0GTZ2 297 aa9.66□□□□□ -0.86
SF3A1-208ENST00000485618 NMT2O60551 498 aa9.66□□□□□ -0.86
SF3A1-208ENST00000485618 PARP1P09874 1014 aaKnown RBP9.66□□□□□ -0.86
SF3A1-208ENST00000485618 STAT2P52630 851 aa9.66□□□□□ -0.86
SF3A1-208ENST00000485618 HERVK_113P62684 666 aa9.66□□□□□ -0.86
SF3A1-208ENST00000485618 MOGSQ13724 837 aa9.66□□□□□ -0.86
SF3A1-208ENST00000485618 PPP2R5BQ15173 497 aa9.66□□□□□ -0.86
SF3A1-208ENST00000485618 ANKRD1Q15327 319 aa9.66□□□□□ -0.86
SF3A1-208ENST00000485618 CCDC96Q2M329 555 aa9.66□□□□□ -0.86
SF3A1-208ENST00000485618 ASPRV1Q53RT3 343 aa9.66□□□□□ -0.86
SF3A1-208ENST00000485618 TREML2Q5T2D2 321 aa9.66□□□□□ -0.86
SF3A1-208ENST00000485618 MB21D2Q8IYB1 491 aaPredicted RBP9.66□□□□□ -0.86
SF3A1-208ENST00000485618 SLF1Q9BQI6 1058 aa9.66□□□□□ -0.86
SF3A1-208ENST00000485618 LZTS2Q9BRK4 669 aa9.66□□□□□ -0.86
SF3A1-208ENST00000485618 ZKSCAN3Q9BRR0 538 aa9.66□□□□□ -0.86
SF3A1-208ENST00000485618 SNX14Q9Y5W7 946 aa9.66□□□□□ -0.86
SF3A1-208ENST00000485618 SLC12A7Q9Y666 1083 aa9.66□□□□□ -0.86
SF3A1-208ENST00000485618 BRCA2P51587 3418 aa9.66□□□□□ -0.86
SF3A1-208ENST00000485618 CENPFP49454 3210 aa9.65□□□□□ -0.86
SF3A1-208ENST00000485618 ECM2O94769 699 aaPredicted RBP9.65□□□□□ -0.86
SF3A1-208ENST00000485618 CASTP20810 708 aaKnown RBP9.65□□□□□ -0.86
SF3A1-208ENST00000485618 FAM110CQ1W6H9 321 aa9.65□□□□□ -0.86
SF3A1-208ENST00000485618 FAM83BQ5T0W9 1011 aa9.65□□□□□ -0.86
SF3A1-208ENST00000485618 RUFY3Q7L099 469 aa9.65□□□□□ -0.86
SF3A1-208ENST00000485618 CYB5R4Q7L1T6 521 aa9.65□□□□□ -0.86
SF3A1-208ENST00000485618 CTCFLQ8NI51 663 aaPredicted RBP9.65□□□□□ -0.86
SF3A1-208ENST00000485618 IGDCC4Q8TDY8 1250 aa9.65□□□□□ -0.86
SF3A1-208ENST00000485618 SH3TC2Q8TF17 1288 aa9.65□□□□□ -0.86
SF3A1-208ENST00000485618 MAP3K14Q99558 947 aa9.65□□□□□ -0.86
SF3A1-208ENST00000485618 P2RX7Q99572 595 aaKnown RBP9.65□□□□□ -0.86
SF3A1-208ENST00000485618 ARHGAP39Q9C0H5 1083 aa9.65□□□□□ -0.86
SF3A1-208ENST00000485618 MTMR7Q9Y216 660 aa9.65□□□□□ -0.86
SF3A1-208ENST00000485618 LAMA4Q16363 1823 aa9.65□□□□□ -0.86
SF3A1-208ENST00000485618 TMEM232C9JQI7 657 aa9.64□□□□□ -0.87
SF3A1-208ENST00000485618 DLL1O00548 723 aa9.64□□□□□ -0.87
SF3A1-208ENST00000485618 DDAH1O94760 285 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms