RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 MAP6Q96JE9 813 aa6.71□□□□□ -1.34
CCDC88A-212ENST00000474059 CCDC74BQ96LY2 380 aa6.71□□□□□ -1.34
CCDC88A-212ENST00000474059 KIF2CQ99661 725 aa6.71□□□□□ -1.34
CCDC88A-212ENST00000474059 PLCD4Q9BRC7 762 aa6.71□□□□□ -1.34
CCDC88A-212ENST00000474059 KLHL3Q9UH77 587 aa6.71□□□□□ -1.34
CCDC88A-212ENST00000474059 OR14I1A6ND48 311 aa6.7□□□□□ -1.34
CCDC88A-212ENST00000474059 IRS4O14654 1257 aaPredicted RBP6.7□□□□□ -1.34
CCDC88A-212ENST00000474059 GRIN3BO60391 1043 aa6.7□□□□□ -1.34
CCDC88A-212ENST00000474059 RLBP1P12271 317 aa6.7□□□□□ -1.34
CCDC88A-212ENST00000474059 SDHBP21912 280 aa6.7□□□□□ -1.34
CCDC88A-212ENST00000474059 VIPR1P32241 457 aa6.7□□□□□ -1.34
CCDC88A-212ENST00000474059 NMIQ13287 307 aaPredicted RBP6.7□□□□□ -1.34
CCDC88A-212ENST00000474059 KIR3DS1Q14943 382 aa6.7□□□□□ -1.34
CCDC88A-212ENST00000474059 BBS9Q3SYG4 887 aa6.7□□□□□ -1.34
CCDC88A-212ENST00000474059 ADGRF1Q5T601 910 aa6.7□□□□□ -1.34
CCDC88A-212ENST00000474059 TMEFF1Q8IYR6 380 aa6.7□□□□□ -1.34
CCDC88A-212ENST00000474059 SYTL5Q8TDW5 730 aaPredicted RBP6.7□□□□□ -1.34
CCDC88A-212ENST00000474059 HHIPL1Q96JK4 782 aa6.7□□□□□ -1.34
CCDC88A-212ENST00000474059 FOXP3Q9BZS1 431 aa6.7□□□□□ -1.34
CCDC88A-212ENST00000474059 PARP2Q9UGN5 583 aa6.7□□□□□ -1.34
CCDC88A-212ENST00000474059 OTOL1A6NHN0 477 aaPredicted RBP6.69□□□□□ -1.34
CCDC88A-212ENST00000474059 SLC22A31A6NKX4 558 aa6.69□□□□□ -1.34
CCDC88A-212ENST00000474059 YBX1P67809 324 aaKnown RBP6.69□□□□□ -1.34
CCDC88A-212ENST00000474059 SRSF3P84103 164 aaKnown RBP6.69□□□□□ -1.34
CCDC88A-212ENST00000474059 SNW1Q13573 536 aaKnown RBP6.69□□□□□ -1.34
CCDC88A-212ENST00000474059 NFIXQ14938 502 aa6.69□□□□□ -1.34
CCDC88A-212ENST00000474059 TMC3Q7Z5M5 1100 aa6.69□□□□□ -1.34
CCDC88A-212ENST00000474059 SIGLEC10Q96LC7 697 aa6.69□□□□□ -1.34
CCDC88A-212ENST00000474059 ANKRD33BA6NCL7 494 aa6.68□□□□□ -1.34
CCDC88A-212ENST00000474059 TNNI2P48788 182 aa6.68□□□□□ -1.34
CCDC88A-212ENST00000474059 CDR1P51861 262 aa6.68□□□□□ -1.34
CCDC88A-212ENST00000474059 TMEM132EQ6IEE7 984 aa6.68□□□□□ -1.34
CCDC88A-212ENST00000474059 RNF111Q6ZNA4 994 aa6.68□□□□□ -1.34
CCDC88A-212ENST00000474059 CXorf38Q8TB03 319 aa6.68□□□□□ -1.34
CCDC88A-212ENST00000474059 TCTN2Q96GX1 697 aa6.68□□□□□ -1.34
CCDC88A-212ENST00000474059 FAM161BQ96MY7 647 aa6.68□□□□□ -1.34
CCDC88A-212ENST00000474059 CRTAC1Q9NQ79 661 aa6.68□□□□□ -1.34
CCDC88A-212ENST00000474059 N4BP3O15049 544 aa6.67□□□□□ -1.34
CCDC88A-212ENST00000474059 SYN1P17600 705 aa6.67□□□□□ -1.34
CCDC88A-212ENST00000474059 KIR2DL1P43626 348 aaPredicted RBP6.67□□□□□ -1.34
CCDC88A-212ENST00000474059 KIR2DL2P43627 348 aaPredicted RBP6.67□□□□□ -1.34
CCDC88A-212ENST00000474059 DAGLBQ8NCG7 672 aa6.67□□□□□ -1.34
CCDC88A-212ENST00000474059 ENOX1Q8TC92 643 aaKnown RBP6.67□□□□□ -1.34
CCDC88A-212ENST00000474059 MINPP1Q9UNW1 487 aa6.67□□□□□ -1.34
CCDC88A-212ENST00000474059 RGS13O14921 159 aa6.66□□□□□ -1.34
CCDC88A-212ENST00000474059 BPNT1O95861 308 aa6.66□□□□□ -1.34
CCDC88A-212ENST00000474059 RPL10P27635 214 aaKnown RBP6.66□□□□□ -1.34
CCDC88A-212ENST00000474059 ERVFRD-1P60508 538 aa6.66□□□□□ -1.34
CCDC88A-212ENST00000474059 FAM160A1Q05DH4 1040 aa6.66□□□□□ -1.34
CCDC88A-212ENST00000474059 CLEC16AQ2KHT3 1053 aa6.66□□□□□ -1.34
CCDC88A-212ENST00000474059 NBPF9Q3BBW0 867 aa6.66□□□□□ -1.34
CCDC88A-212ENST00000474059 EAPPQ56P03 285 aaPredicted RBP6.66□□□□□ -1.34
CCDC88A-212ENST00000474059 REC114Q7Z4M0 266 aa6.66□□□□□ -1.34
CCDC88A-212ENST00000474059 WAPLQ7Z5K2 1190 aa6.66□□□□□ -1.34
CCDC88A-212ENST00000474059 IGDCC3Q8IVU1 814 aa6.66□□□□□ -1.34
CCDC88A-212ENST00000474059 LINC00116Q8NCU8 138 aa6.66□□□□□ -1.34
CCDC88A-212ENST00000474059 FEZF2Q8TBJ5 459 aa6.66□□□□□ -1.34
CCDC88A-212ENST00000474059 IRAK3Q9Y616 596 aa6.66□□□□□ -1.34
CCDC88A-212ENST00000474059 RFXAPO00287 272 aa6.65□□□□□ -1.34
CCDC88A-212ENST00000474059 AFF3P51826 1226 aaKnown RBP6.65□□□□□ -1.34
CCDC88A-212ENST00000474059 VMACQ2NL98 169 aa6.65□□□□□ -1.34
CCDC88A-212ENST00000474059 NBPF12Q5TAG4 269 aaPredicted RBP6.65□□□□□ -1.34
CCDC88A-212ENST00000474059 CEP128Q6ZU80 1094 aa6.65□□□□□ -1.34
CCDC88A-212ENST00000474059 TMC4Q7Z404 712 aa6.65□□□□□ -1.34
CCDC88A-212ENST00000474059 PHACTR4Q8IZ21 702 aa6.65□□□□□ -1.34
CCDC88A-212ENST00000474059 TP53I13Q8NBR0 393 aaPredicted RBP6.65□□□□□ -1.34
CCDC88A-212ENST00000474059 SYT8Q8NBV8 401 aa6.65□□□□□ -1.34
CCDC88A-212ENST00000474059 TMEM74Q96NL1 305 aa6.65□□□□□ -1.34
CCDC88A-212ENST00000474059 KLHL14Q9P2G3 628 aa6.65□□□□□ -1.34
CCDC88A-212ENST00000474059 TCFL5Q9UL49 500 aa6.65□□□□□ -1.34
CCDC88A-212ENST00000474059 PNLIPP16233 465 aa6.64□□□□□ -1.35
CCDC88A-212ENST00000474059 MPP2Q14168 576 aa6.64□□□□□ -1.35
CCDC88A-212ENST00000474059 FBXO33Q7Z6M2 555 aa6.64□□□□□ -1.35
CCDC88A-212ENST00000474059 GGNQ86UU5 652 aa6.64□□□□□ -1.35
CCDC88A-212ENST00000474059 FAM129CQ86XR2 697 aa6.64□□□□□ -1.35
CCDC88A-212ENST00000474059 TMEM151BQ8IW70 566 aa6.64□□□□□ -1.35
CCDC88A-212ENST00000474059 RSRP1Q9BUV0 290 aa6.64□□□□□ -1.35
CCDC88A-212ENST00000474059 FADS2P1A8MWK0 482 aa6.63□□□□□ -1.35
CCDC88A-212ENST00000474059 PRAMEF1O95521 474 aa6.63□□□□□ -1.35
CCDC88A-212ENST00000474059 POLR2BP30876 1174 aaKnown RBP6.63□□□□□ -1.35
CCDC88A-212ENST00000474059 PSMD2Q13200 908 aa6.63□□□□□ -1.35
CCDC88A-212ENST00000474059 ARSHQ5FYA8 562 aa6.63□□□□□ -1.35
CCDC88A-212ENST00000474059 DNAJC14Q6Y2X3 702 aaPredicted RBP6.63□□□□□ -1.35
CCDC88A-212ENST00000474059 ZNF655Q8N720 491 aaPredicted RBP6.63□□□□□ -1.35
CCDC88A-212ENST00000474059 MZB1Q8WU39 189 aa6.63□□□□□ -1.35
CCDC88A-212ENST00000474059 KCNQ5Q9NR82 932 aa6.63□□□□□ -1.35
CCDC88A-212ENST00000474059 FKTNO75072 461 aa6.62□□□□□ -1.35
CCDC88A-212ENST00000474059 SYPP08247 313 aa6.62□□□□□ -1.35
CCDC88A-212ENST00000474059 TAGLNQ01995 201 aaKnown RBP6.62□□□□□ -1.35
CCDC88A-212ENST00000474059 HSF5Q4G112 596 aaPredicted RBP6.62□□□□□ -1.35
CCDC88A-212ENST00000474059 GOLM1Q8NBJ4 401 aa6.62□□□□□ -1.35
CCDC88A-212ENST00000474059 SYTL4Q96C24 671 aaPredicted RBP6.62□□□□□ -1.35
CCDC88A-212ENST00000474059 CRELD1Q96HD1 420 aa6.62□□□□□ -1.35
CCDC88A-212ENST00000474059 SIRT5Q9NXA8 310 aa6.62□□□□□ -1.35
CCDC88A-212ENST00000474059 ZMYM5Q9UJ78 669 aa6.62□□□□□ -1.35
CCDC88A-212ENST00000474059 GBP2P32456 591 aaPredicted RBP6.61□□□□□ -1.35
CCDC88A-212ENST00000474059 FAM196AQ6ZSG2 479 aa6.61□□□□□ -1.35
CCDC88A-212ENST00000474059 LRRC3Q9BY71 257 aa6.61□□□□□ -1.35
CCDC88A-212ENST00000474059 KRTAP9-8Q9BYQ0 159 aa6.61□□□□□ -1.35
CCDC88A-212ENST00000474059 PRDM14Q9GZV8 571 aa6.61□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms