RNA–Protein interactions for RNA: ENST00000465461.6

CUX1-207, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-207ENST00000465461 RLFQ13129 1914 aa13.74□□□□□ -0.21
CUX1-207ENST00000465461 TNKSO95271 1327 aa13.73□□□□□ -0.21
CUX1-207ENST00000465461 FRMPD2Q68DX3 1309 aaPredicted RBP13.73□□□□□ -0.21
CUX1-207ENST00000465461 TOP1P11387 765 aaKnown RBP13.73□□□□□ -0.21
CUX1-207ENST00000465461 ERVK-9P63128 1117 aa13.73□□□□□ -0.21
CUX1-207ENST00000465461 ERVK-24P63145 666 aa13.73□□□□□ -0.21
CUX1-207ENST00000465461 TRDNQ13061 729 aa13.73□□□□□ -0.21
CUX1-207ENST00000465461 RASEFQ8IZ41 740 aa13.73□□□□□ -0.21
CUX1-207ENST00000465461 NCOA7Q8NI08 942 aa13.73□□□□□ -0.21
CUX1-207ENST00000465461 PORCNQ9H237 461 aa13.73□□□□□ -0.21
CUX1-207ENST00000465461 CNNM2Q9H8M5 875 aa13.73□□□□□ -0.21
CUX1-207ENST00000465461 SENP2Q9HC62 589 aa13.73□□□□□ -0.21
CUX1-207ENST00000465461 HOXC10Q9NYD6 342 aa13.73□□□□□ -0.21
CUX1-207ENST00000465461 MORF4L1Q9UBU8 362 aa13.73□□□□□ -0.21
CUX1-207ENST00000465461 GABRQQ9UN88 632 aa13.73□□□□□ -0.21
CUX1-207ENST00000465461 TMEM232C9JQI7 657 aa13.72□□□□□ -0.21
CUX1-207ENST00000465461 BMP3P12645 472 aa13.72□□□□□ -0.21
CUX1-207ENST00000465461 SLC1A4P43007 532 aa13.72□□□□□ -0.21
CUX1-207ENST00000465461 FCGRTP55899 365 aa13.72□□□□□ -0.21
CUX1-207ENST00000465461 ANTXR2P58335 489 aa13.72□□□□□ -0.21
CUX1-207ENST00000465461 SNAP25P60880 206 aa13.72□□□□□ -0.21
CUX1-207ENST00000465461 PLS1Q14651 629 aa13.72□□□□□ -0.21
CUX1-207ENST00000465461 TTBK2Q6IQ55 1244 aa13.72□□□□□ -0.21
CUX1-207ENST00000465461 IQCA1Q86XH1 822 aa13.72□□□□□ -0.21
CUX1-207ENST00000465461 ENAHQ8N8S7 591 aaPredicted RBP13.72□□□□□ -0.21
CUX1-207ENST00000465461 KIFC2Q96AC6 838 aa13.72□□□□□ -0.21
CUX1-207ENST00000465461 SLF1Q9BQI6 1058 aa13.72□□□□□ -0.21
CUX1-207ENST00000465461 GPHNQ9NQX3 736 aaPredicted RBP13.72□□□□□ -0.21
CUX1-207ENST00000465461 PTPN22Q9Y2R2 807 aa13.72□□□□□ -0.21
CUX1-207ENST00000465461 MGAMO43451 1857 aa13.72□□□□□ -0.21
CUX1-207ENST00000465461 PARP14Q460N5 1801 aa13.71□□□□□ -0.21
CUX1-207ENST00000465461 TNPO2O14787 897 aaKnown RBP13.71□□□□□ -0.21
CUX1-207ENST00000465461 SLC16A2P36021 539 aa13.71□□□□□ -0.21
CUX1-207ENST00000465461 SLC4A3P48751 1232 aa13.71□□□□□ -0.21
CUX1-207ENST00000465461 PRKCZQ05513 592 aa13.71□□□□□ -0.21
CUX1-207ENST00000465461 TMEM132BQ14DG7 1078 aa13.71□□□□□ -0.21
CUX1-207ENST00000465461 SEC23AQ15436 765 aa13.71□□□□□ -0.21
CUX1-207ENST00000465461 CCDC96Q2M329 555 aa13.71□□□□□ -0.21
CUX1-207ENST00000465461 ADCK5Q3MIX3 580 aa13.71□□□□□ -0.21
CUX1-207ENST00000465461 PPP4R3BQ5MIZ7 849 aa13.71□□□□□ -0.21
CUX1-207ENST00000465461 LBX2Q6XYB7 198 aa13.71□□□□□ -0.21
CUX1-207ENST00000465461 RALYLQ86SE5 291 aaKnown RBP13.71□□□□□ -0.21
CUX1-207ENST00000465461 DGKHQ86XP1 1220 aa13.71□□□□□ -0.21
CUX1-207ENST00000465461 MB21D2Q8IYB1 491 aaPredicted RBP13.71□□□□□ -0.21
CUX1-207ENST00000465461 TTC14Q96N46 770 aa13.71□□□□□ -0.21
CUX1-207ENST00000465461 UBAC1Q9BSL1 405 aa13.71□□□□□ -0.21
CUX1-207ENST00000465461 GPCPD1Q9NPB8 672 aa13.71□□□□□ -0.21
CUX1-207ENST00000465461 PPP1R9AQ9ULJ8 1098 aa13.71□□□□□ -0.21
CUX1-207ENST00000465461 RABGAP1Q9Y3P9 1069 aa13.71□□□□□ -0.21
CUX1-207ENST00000465461 GTF3C3Q9Y5Q9 886 aa13.71□□□□□ -0.21
CUX1-207ENST00000465461 PTCH2Q9Y6C5 1203 aa13.71□□□□□ -0.21
CUX1-207ENST00000465461 MYPNQ86TC9 1320 aa13.7□□□□□ -0.22
CUX1-207ENST00000465461 VWA5AO00534 786 aa13.7□□□□□ -0.22
CUX1-207ENST00000465461 IFIT3O14879 490 aaKnown RBP13.7□□□□□ -0.22
CUX1-207ENST00000465461 GOLGA8HP0CJ92 632 aa13.7□□□□□ -0.22
CUX1-207ENST00000465461 PDHBP11177 359 aa13.7□□□□□ -0.22
CUX1-207ENST00000465461 IKQ13123 557 aaPredicted RBP13.7□□□□□ -0.22
CUX1-207ENST00000465461 WDR78Q5VTH9 848 aa13.7□□□□□ -0.22
CUX1-207ENST00000465461 GTF3C2Q8WUA4 911 aaPredicted RBP13.7□□□□□ -0.22
CUX1-207ENST00000465461 ABHD8Q96I13 439 aa13.7□□□□□ -0.22
CUX1-207ENST00000465461 GMCL1Q96IK5 515 aa13.7□□□□□ -0.22
CUX1-207ENST00000465461 LRRC2Q9BYS8 371 aa13.7□□□□□ -0.22
CUX1-207ENST00000465461 CPVLQ9H3G5 476 aa13.7□□□□□ -0.22
CUX1-207ENST00000465461 KAT14Q9H8E8 782 aa13.7□□□□□ -0.22
CUX1-207ENST00000465461 SRRDQ9UH36 339 aa13.7□□□□□ -0.22
CUX1-207ENST00000465461 SYNPO2Q9UMS6 1093 aa13.7□□□□□ -0.22
CUX1-207ENST00000465461 ADAMTS5Q9UNA0 930 aa13.7□□□□□ -0.22
CUX1-207ENST00000465461 HPS5Q9UPZ3 1129 aa13.7□□□□□ -0.22
CUX1-207ENST00000465461 COL11A1P12107 1806 aaPredicted RBP13.69□□□□□ -0.22
CUX1-207ENST00000465461 ARHGEF6Q15052 776 aa13.69□□□□□ -0.22
CUX1-207ENST00000465461 IFIT1BQ5T764 474 aaKnown RBP13.69□□□□□ -0.22
CUX1-207ENST00000465461 FBXO46Q6PJ61 603 aaPredicted RBP13.69□□□□□ -0.22
CUX1-207ENST00000465461 CCAR1Q8IX12 1150 aaKnown RBP13.69□□□□□ -0.22
CUX1-207ENST00000465461 CPXCR1Q8N123 301 aa13.69□□□□□ -0.22
CUX1-207ENST00000465461 PNMA1Q8ND90 353 aa13.69□□□□□ -0.22
CUX1-207ENST00000465461 REPS2Q8NFH8 660 aa13.69□□□□□ -0.22
CUX1-207ENST00000465461 ANKS1AQ92625 1134 aa13.69□□□□□ -0.22
CUX1-207ENST00000465461 TCEANC2Q96MN5 208 aa13.69□□□□□ -0.22
CUX1-207ENST00000465461 MOV10L1Q9BXT6 1211 aaKnown RBP13.69□□□□□ -0.22
CUX1-207ENST00000465461 SPATC1LQ9H0A9 340 aa13.69□□□□□ -0.22
CUX1-207ENST00000465461 RAVER2Q9HCJ3 691 aaKnown RBP13.69□□□□□ -0.22
CUX1-207ENST00000465461 FEM1BQ9UK73 627 aa13.69□□□□□ -0.22
CUX1-207ENST00000465461 DOCK3Q8IZD9 2030 aa13.69□□□□□ -0.22
CUX1-207ENST00000465461 A0A0G2JMZ2 1700 aa13.68□□□□□ -0.22
CUX1-207ENST00000465461 PRC1O43663 620 aa13.68□□□□□ -0.22
CUX1-207ENST00000465461 CAPN15O75808 1086 aa13.68□□□□□ -0.22
CUX1-207ENST00000465461 REC8O95072 547 aa13.68□□□□□ -0.22
CUX1-207ENST00000465461 MYCP01106 439 aaPredicted RBP13.68□□□□□ -0.22
CUX1-207ENST00000465461 CPA1P15085 419 aa13.68□□□□□ -0.22
CUX1-207ENST00000465461 TAL1P17542 331 aaPredicted RBP13.68□□□□□ -0.22
CUX1-207ENST00000465461 HOXD10P28358 340 aa13.68□□□□□ -0.22
CUX1-207ENST00000465461 HSPA4P34932 840 aa13.68□□□□□ -0.22
CUX1-207ENST00000465461 FLT3LGP49771 235 aa13.68□□□□□ -0.22
CUX1-207ENST00000465461 STAT2P52630 851 aa13.68□□□□□ -0.22
CUX1-207ENST00000465461 PKN2Q16513 984 aaKnown RBP13.68□□□□□ -0.22
CUX1-207ENST00000465461 CCDC178Q5BJE1 867 aa13.68□□□□□ -0.22
CUX1-207ENST00000465461 TMEM67Q5HYA8 995 aa13.68□□□□□ -0.22
CUX1-207ENST00000465461 RNF20Q5VTR2 975 aa13.68□□□□□ -0.22
CUX1-207ENST00000465461 GPR142Q7Z601 462 aa13.68□□□□□ -0.22
CUX1-207ENST00000465461 NCAPG2Q86XI2 1143 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms