RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 RETREG2Q8NC44 543 aa21■□□□□ 0.95
CCDC88B-204ENST00000463837 ARHGAP31Q2M1Z3 1444 aa21■□□□□ 0.95
CCDC88B-204ENST00000463837 hCG_1642624A0A1W2PR95 340 aa21■□□□□ 0.95
CCDC88B-204ENST00000463837 SMTNP53814 917 aa21■□□□□ 0.95
CCDC88B-204ENST00000463837 DPCR1Q3MIW9 517 aa21■□□□□ 0.95
CCDC88B-204ENST00000463837 GKAP1Q5VSY0 366 aaPredicted RBP21■□□□□ 0.95
CCDC88B-204ENST00000463837 GUCY2FP51841 1108 aa20.99■□□□□ 0.95
CCDC88B-204ENST00000463837 ZNF827Q17R98 1081 aa20.99■□□□□ 0.95
CCDC88B-204ENST00000463837 MAP7D1Q3KQU3 841 aa20.99■□□□□ 0.95
CCDC88B-204ENST00000463837 IFNL3Q8IZI9 196 aa20.99■□□□□ 0.95
CCDC88B-204ENST00000463837 ADD1P35611 737 aaKnown RBP20.99■□□□□ 0.95
CCDC88B-204ENST00000463837 CCDC62Q6P9F0 684 aa20.99■□□□□ 0.95
CCDC88B-204ENST00000463837 BLIDQ8IZY5 108 aa20.99■□□□□ 0.95
CCDC88B-204ENST00000463837 LINC00301Q8NCQ3 95 aa20.99■□□□□ 0.95
CCDC88B-204ENST00000463837 ZNF496Q96IT1 587 aaPredicted RBP20.99■□□□□ 0.95
CCDC88B-204ENST00000463837 FAM204AQ9H8W3 233 aa20.99■□□□□ 0.95
CCDC88B-204ENST00000463837 DDAH1O94760 285 aa20.99■□□□□ 0.95
CCDC88B-204ENST00000463837 FGAP02671 866 aa20.99■□□□□ 0.95
CCDC88B-204ENST00000463837 RPN1P04843 607 aaKnown RBP20.99■□□□□ 0.95
CCDC88B-204ENST00000463837 KRT5P13647 590 aa20.99■□□□□ 0.95
CCDC88B-204ENST00000463837 HHATQ5VTY9 493 aa20.99■□□□□ 0.95
CCDC88B-204ENST00000463837 DYMQ7RTS9 669 aa20.99■□□□□ 0.95
CCDC88B-204ENST00000463837 ZSCAN10Q96SZ4 725 aaPredicted RBP20.99■□□□□ 0.95
CCDC88B-204ENST00000463837 MAK16Q9BXY0 300 aaKnown RBP20.99■□□□□ 0.95
CCDC88B-204ENST00000463837 NOL3O60936 208 aaKnown RBP20.99■□□□□ 0.95
CCDC88B-204ENST00000463837 LIG3P49916 1009 aa20.99■□□□□ 0.95
CCDC88B-204ENST00000463837 MCUR1Q96AQ8 359 aa20.99■□□□□ 0.95
CCDC88B-204ENST00000463837 RAB3IPQ96QF0 476 aaPredicted RBP20.99■□□□□ 0.95
CCDC88B-204ENST00000463837 DPH6Q7L8W6 267 aa20.98■□□□□ 0.95
CCDC88B-204ENST00000463837 VSTM4Q8IW00 320 aa20.98■□□□□ 0.95
CCDC88B-204ENST00000463837 REXO1Q8N1G1 1221 aaKnown RBP20.98■□□□□ 0.95
CCDC88B-204ENST00000463837 CUEDC2Q9H467 287 aa20.98■□□□□ 0.95
CCDC88B-204ENST00000463837 ZBTB21Q9ULJ3 1066 aa20.98■□□□□ 0.95
CCDC88B-204ENST00000463837 SEC31AO94979 1220 aaKnown RBP20.98■□□□□ 0.95
CCDC88B-204ENST00000463837 EEF1GP26641 437 aaKnown RBP20.98■□□□□ 0.95
CCDC88B-204ENST00000463837 PPM1FP49593 454 aaPredicted RBP20.98■□□□□ 0.95
CCDC88B-204ENST00000463837 RESTQ13127 1097 aa20.98■□□□□ 0.95
CCDC88B-204ENST00000463837 CCDC105Q8IYK2 499 aa20.98■□□□□ 0.95
CCDC88B-204ENST00000463837 LSM14BQ9BX40 385 aaKnown RBP20.98■□□□□ 0.95
CCDC88B-204ENST00000463837 TRAPPC10P48553 1259 aa20.98■□□□□ 0.95
CCDC88B-204ENST00000463837 UBE3CQ15386 1083 aa20.98■□□□□ 0.95
CCDC88B-204ENST00000463837 MYOCDQ8IZQ8 938 aa20.98■□□□□ 0.95
CCDC88B-204ENST00000463837 TRIM37O94972 964 aa20.98■□□□□ 0.95
CCDC88B-204ENST00000463837 RBM26Q5T8P6 1007 aaKnown RBP20.98■□□□□ 0.95
CCDC88B-204ENST00000463837 SLC35F6Q8N357 371 aa20.98■□□□□ 0.95
CCDC88B-204ENST00000463837 MYO5CQ9NQX4 1742 aa20.97■□□□□ 0.95
CCDC88B-204ENST00000463837 CIAO1O76071 339 aa20.97■□□□□ 0.95
CCDC88B-204ENST00000463837 ATP1A2P50993 1020 aa20.97■□□□□ 0.95
CCDC88B-204ENST00000463837 CLCN6P51797 869 aa20.97■□□□□ 0.95
CCDC88B-204ENST00000463837 TCIRG1Q13488 830 aa20.97■□□□□ 0.95
CCDC88B-204ENST00000463837 CCDC38Q502W7 563 aa20.97■□□□□ 0.95
CCDC88B-204ENST00000463837 CLIC6Q96NY7 704 aa20.97■□□□□ 0.95
CCDC88B-204ENST00000463837 GPCPD1Q9NPB8 672 aa20.97■□□□□ 0.95
CCDC88B-204ENST00000463837 CCNL1Q9UK58 526 aaPredicted RBP20.97■□□□□ 0.95
CCDC88B-204ENST00000463837 FAM169AQ9Y6X4 670 aa20.97■□□□□ 0.95
CCDC88B-204ENST00000463837 GAS8O95995 478 aa20.97■□□□□ 0.95
CCDC88B-204ENST00000463837 PSMC4P43686 418 aa20.97■□□□□ 0.95
CCDC88B-204ENST00000463837 ENOX1Q8TC92 643 aaKnown RBP20.97■□□□□ 0.95
CCDC88B-204ENST00000463837 FNBP1Q96RU3 617 aa20.97■□□□□ 0.95
CCDC88B-204ENST00000463837 FAM212AQ96EL1 285 aa20.97■□□□□ 0.95
CCDC88B-204ENST00000463837 CASP14P31944 242 aa20.97■□□□□ 0.95
CCDC88B-204ENST00000463837 RNF10Q8N5U6 811 aaKnown RBP20.97■□□□□ 0.95
CCDC88B-204ENST00000463837 TTC16Q8NEE8 873 aa20.97■□□□□ 0.95
CCDC88B-204ENST00000463837 VCX3BQ9H321 246 aa20.97■□□□□ 0.95
CCDC88B-204ENST00000463837 NLRC4Q9NPP4 1024 aa20.97■□□□□ 0.95
CCDC88B-204ENST00000463837 BTBD18B2RXH4 712 aa20.96■□□□□ 0.95
CCDC88B-204ENST00000463837 CYP21A2P08686 494 aa20.96■□□□□ 0.95
CCDC88B-204ENST00000463837 ZNF131P52739 623 aa20.96■□□□□ 0.95
CCDC88B-204ENST00000463837 EPHB4P54760 987 aa20.96■□□□□ 0.95
CCDC88B-204ENST00000463837 RIMBP2O15034 1052 aa20.96■□□□□ 0.95
CCDC88B-204ENST00000463837 MCTP2Q6DN12 878 aa20.96■□□□□ 0.95
CCDC88B-204ENST00000463837 ARHGEF2Q92974 986 aaKnown RBP20.96■□□□□ 0.95
CCDC88B-204ENST00000463837 AGTPBP1Q9UPW5 1226 aa20.96■□□□□ 0.95
CCDC88B-204ENST00000463837 CDK12Q9NYV4 1490 aaPredicted RBP20.96■□□□□ 0.95
CCDC88B-204ENST00000463837 KRIT1O00522 736 aa20.96■□□□□ 0.95
CCDC88B-204ENST00000463837 SARNPP82979 210 aaKnown RBP20.96■□□□□ 0.95
CCDC88B-204ENST00000463837 PANX2Q96RD6 677 aa20.96■□□□□ 0.95
CCDC88B-204ENST00000463837 FAM184BQ9ULE4 1060 aa20.96■□□□□ 0.95
CCDC88B-204ENST00000463837 PDE6AP16499 860 aa20.95■□□□□ 0.94
CCDC88B-204ENST00000463837 CFAP57Q96MR6 1250 aa20.95■□□□□ 0.94
CCDC88B-204ENST00000463837 TBC1D7Q9P0N9 293 aa20.95■□□□□ 0.94
CCDC88B-204ENST00000463837 RNF14Q9UBS8 474 aa20.95■□□□□ 0.94
CCDC88B-204ENST00000463837 NEO1Q92859 1461 aa20.95■□□□□ 0.94
CCDC88B-204ENST00000463837 STAT1P42224 750 aa20.95■□□□□ 0.94
CCDC88B-204ENST00000463837 PHLDB2Q86SQ0 1253 aa20.95■□□□□ 0.94
CCDC88B-204ENST00000463837 P3H4Q92791 437 aa20.95■□□□□ 0.94
CCDC88B-204ENST00000463837 SYMPKQ92797 1274 aaKnown RBP20.95■□□□□ 0.94
CCDC88B-204ENST00000463837 SAP30BPQ9UHR5 308 aaKnown RBP20.95■□□□□ 0.94
CCDC88B-204ENST00000463837 A0A087WUV0 522 aaPredicted RBP20.95■□□□□ 0.94
CCDC88B-204ENST00000463837 KCNK3O14649 394 aa20.95■□□□□ 0.94
CCDC88B-204ENST00000463837 A1BGP04217 495 aa20.95■□□□□ 0.94
CCDC88B-204ENST00000463837 LGSNQ5TDP6 509 aa20.95■□□□□ 0.94
CCDC88B-204ENST00000463837 LAD1O00515 517 aa20.95■□□□□ 0.94
CCDC88B-204ENST00000463837 HOXA7P31268 230 aaPredicted RBP20.95■□□□□ 0.94
CCDC88B-204ENST00000463837 ARL1P40616 181 aaPredicted RBP20.95■□□□□ 0.94
CCDC88B-204ENST00000463837 KIF23Q02241 960 aaPredicted RBP20.95■□□□□ 0.94
CCDC88B-204ENST00000463837 ARHGEF35A5YM69 484 aa20.94■□□□□ 0.94
CCDC88B-204ENST00000463837 DKC1O60832 514 aaKnown RBP eCLIP20.94■□□□□ 0.94
CCDC88B-204ENST00000463837 SCG2P13521 617 aa20.94■□□□□ 0.94
CCDC88B-204ENST00000463837 KLHL14Q9P2G3 628 aa20.94■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms