RNA–Protein interactions for RNA: ENST00000462429.1

VPS41-210, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 3

Gene VPS41, Length 347 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-210ENST00000462429 IFRD2Q12894 506 aaPredicted RBP6.3□□□□□ -1.4
VPS41-210ENST00000462429 NMIQ13287 307 aaPredicted RBP6.3□□□□□ -1.4
VPS41-210ENST00000462429 RASGRF1Q13972 1273 aa6.3□□□□□ -1.4
VPS41-210ENST00000462429 RASA3Q14644 834 aa6.3□□□□□ -1.4
VPS41-210ENST00000462429 NKPD1Q17RQ9 610 aa6.3□□□□□ -1.4
VPS41-210ENST00000462429 CLEC16AQ2KHT3 1053 aa6.3□□□□□ -1.4
VPS41-210ENST00000462429 NOL9Q5SY16 702 aaKnown RBP6.3□□□□□ -1.4
VPS41-210ENST00000462429 MRM1Q6IN84 353 aaKnown RBP6.3□□□□□ -1.4
VPS41-210ENST00000462429 INTS5Q6P9B9 1019 aaKnown RBP6.3□□□□□ -1.4
VPS41-210ENST00000462429 ADAT2Q7Z6V5 191 aaKnown RBP6.3□□□□□ -1.4
VPS41-210ENST00000462429 ST13P5Q8NFI4 369 aaPredicted RBP6.3□□□□□ -1.4
VPS41-210ENST00000462429 ENOX1Q8TC92 643 aaKnown RBP6.3□□□□□ -1.4
VPS41-210ENST00000462429 GPR62Q9BZJ7 368 aa6.3□□□□□ -1.4
VPS41-210ENST00000462429 PRDM14Q9GZV8 571 aa6.3□□□□□ -1.4
VPS41-210ENST00000462429 KLHL25Q9H0H3 589 aa6.3□□□□□ -1.4
VPS41-210ENST00000462429 GP6Q9HCN6 339 aa6.3□□□□□ -1.4
VPS41-210ENST00000462429 GPATCH2Q9NW75 528 aa6.3□□□□□ -1.4
VPS41-210ENST00000462429 WHRNQ9P202 907 aa6.3□□□□□ -1.4
VPS41-210ENST00000462429 ZNF451Q9Y4E5 1061 aa6.3□□□□□ -1.4
VPS41-210ENST00000462429 SNX11Q9Y5W9 270 aa6.3□□□□□ -1.4
VPS41-210ENST00000462429 AGRPO00253 132 aa6.29□□□□□ -1.4
VPS41-210ENST00000462429 SHOXO15266 292 aa6.29□□□□□ -1.4
VPS41-210ENST00000462429 SIGLEC6O43699 453 aa6.29□□□□□ -1.4
VPS41-210ENST00000462429 CDKAL1Q5VV42 579 aa6.29□□□□□ -1.4
VPS41-210ENST00000462429 THAP5Q7Z6K1 395 aa6.29□□□□□ -1.4
VPS41-210ENST00000462429 NOP9Q86U38 636 aaKnown RBP6.29□□□□□ -1.4
VPS41-210ENST00000462429 SPACA3Q8IXA5 215 aa6.29□□□□□ -1.4
VPS41-210ENST00000462429 PLD6Q8N2A8 252 aaKnown RBP6.29□□□□□ -1.4
VPS41-210ENST00000462429 ZC3H7BQ9UGR2 993 aaKnown RBP6.29□□□□□ -1.4
VPS41-210ENST00000462429 RNF112Q9ULX5 631 aa6.29□□□□□ -1.4
VPS41-210ENST00000462429 PLAGL2Q9UPG8 496 aa6.29□□□□□ -1.4
VPS41-210ENST00000462429 SUGT1Q9Y2Z0 365 aa6.29□□□□□ -1.4
VPS41-210ENST00000462429 U3KQE9 123 aa6.29□□□□□ -1.4
VPS41-210ENST00000462429 A0A087WZG4 1122 aa6.28□□□□□ -1.4
VPS41-210ENST00000462429 COBLO75128 1261 aa6.28□□□□□ -1.4
VPS41-210ENST00000462429 SNW1Q13573 536 aaKnown RBP6.28□□□□□ -1.4
VPS41-210ENST00000462429 SV2CQ496J9 727 aa6.28□□□□□ -1.4
VPS41-210ENST00000462429 MTERF2Q49AM1 385 aa6.28□□□□□ -1.4
VPS41-210ENST00000462429 TMC3Q7Z5M5 1100 aa6.28□□□□□ -1.4
VPS41-210ENST00000462429 ZNF669Q96BR6 464 aaPredicted RBP6.28□□□□□ -1.4
VPS41-210ENST00000462429 HRASLS5Q96KN8 279 aa6.28□□□□□ -1.4
VPS41-210ENST00000462429 FGD4Q96M96 766 aa6.28□□□□□ -1.4
VPS41-210ENST00000462429 HSPA12BQ96MM6 686 aa6.28□□□□□ -1.4
VPS41-210ENST00000462429 DSCC1Q9BVC3 393 aa6.28□□□□□ -1.4
VPS41-210ENST00000462429 PIF1Q9H611 641 aa6.28□□□□□ -1.4
VPS41-210ENST00000462429 CHST7Q9NS84 486 aa6.28□□□□□ -1.4
VPS41-210ENST00000462429 GFOD1Q9NXC2 390 aa6.28□□□□□ -1.4
VPS41-210ENST00000462429 SUSD2Q9UGT4 822 aa6.28□□□□□ -1.4
VPS41-210ENST00000462429 ST14Q9Y5Y6 855 aa6.28□□□□□ -1.4
VPS41-210ENST00000462429 FHOD1Q9Y613 1164 aa6.28□□□□□ -1.4
VPS41-210ENST00000462429 FAM221BA6H8Z2 402 aa6.27□□□□□ -1.41
VPS41-210ENST00000462429 IQCA1LA6NCM1 817 aa6.27□□□□□ -1.41
VPS41-210ENST00000462429 H3BS24 57 aa6.27□□□□□ -1.41
VPS41-210ENST00000462429 SRFP11831 508 aa6.27□□□□□ -1.41
VPS41-210ENST00000462429 HOXA10P31260 410 aaPredicted RBP6.27□□□□□ -1.41
VPS41-210ENST00000462429 ZNF445P59923 1031 aa6.27□□□□□ -1.41
VPS41-210ENST00000462429 SLC10A6Q3KNW5 377 aa6.27□□□□□ -1.41
VPS41-210ENST00000462429 CRACR2BQ8N4Y2 399 aaPredicted RBP6.27□□□□□ -1.41
VPS41-210ENST00000462429 DAGLBQ8NCG7 672 aa6.27□□□□□ -1.41
VPS41-210ENST00000462429 SYTL5Q8TDW5 730 aaPredicted RBP6.27□□□□□ -1.41
VPS41-210ENST00000462429 PPP1R14AQ96A00 147 aa6.27□□□□□ -1.41
VPS41-210ENST00000462429 MISP3Q96FF7 219 aa6.27□□□□□ -1.41
VPS41-210ENST00000462429 DUSP15Q9H1R2 295 aaPredicted RBP6.27□□□□□ -1.41
VPS41-210ENST00000462429 LRP2BPQ9P2M1 347 aa6.27□□□□□ -1.41
VPS41-210ENST00000462429 DIS3Q9Y2L1 958 aaKnown RBP6.27□□□□□ -1.41
VPS41-210ENST00000462429 SHISA3A0PJX4 238 aa6.26□□□□□ -1.41
VPS41-210ENST00000462429 NOP56O00567 594 aaKnown RBP6.26□□□□□ -1.41
VPS41-210ENST00000462429 PRAMEF1O95521 474 aa6.26□□□□□ -1.41
VPS41-210ENST00000462429 PRKCQQ04759 706 aa6.26□□□□□ -1.41
VPS41-210ENST00000462429 MSMPQ1L6U9 139 aa6.26□□□□□ -1.41
VPS41-210ENST00000462429 TSPYL5Q86VY4 417 aaPredicted RBP6.26□□□□□ -1.41
VPS41-210ENST00000462429 STK11IPQ8N1F8 1099 aa6.26□□□□□ -1.41
VPS41-210ENST00000462429 FIBCD1Q8N539 461 aa6.26□□□□□ -1.41
VPS41-210ENST00000462429 ZNF655Q8N720 491 aaPredicted RBP6.26□□□□□ -1.41
VPS41-210ENST00000462429 ADCY4Q8NFM4 1077 aa6.26□□□□□ -1.41
VPS41-210ENST00000462429 ASB11Q8WXH4 323 aa6.26□□□□□ -1.41
VPS41-210ENST00000462429 BRF1Q92994 677 aa6.26□□□□□ -1.41
VPS41-210ENST00000462429 UBE2FQ969M7 185 aa6.26□□□□□ -1.41
VPS41-210ENST00000462429 RCC1LQ96I51 464 aaKnown RBP6.26□□□□□ -1.41
VPS41-210ENST00000462429 HDAC8Q9BY41 377 aa6.26□□□□□ -1.41
VPS41-210ENST00000462429 BSDC1Q9NW68 430 aaPredicted RBP6.26□□□□□ -1.41
VPS41-210ENST00000462429 ZSWIM5Q9P217 1185 aa6.26□□□□□ -1.41
VPS41-210ENST00000462429 VAV3Q9UKW4 847 aa6.26□□□□□ -1.41
VPS41-210ENST00000462429 SF3B6Q9Y3B4 125 aaKnown RBP6.26□□□□□ -1.41
VPS41-210ENST00000462429 RBAK-RBAKDNI3L0D1 243 aa6.25□□□□□ -1.41
VPS41-210ENST00000462429 TPP2P29144 1249 aaPredicted RBP6.25□□□□□ -1.41
VPS41-210ENST00000462429 AOC3Q16853 763 aa6.25□□□□□ -1.41
VPS41-210ENST00000462429 CWF19L1Q69YN2 538 aaKnown RBP6.25□□□□□ -1.41
VPS41-210ENST00000462429 POMZP3Q6PJE2 187 aa6.25□□□□□ -1.41
VPS41-210ENST00000462429 LRRC47Q8N1G4 583 aaKnown RBP6.25□□□□□ -1.41
VPS41-210ENST00000462429 LRRN4CLQ8ND94 238 aa6.25□□□□□ -1.41
VPS41-210ENST00000462429 BVESQ8NE79 360 aa6.25□□□□□ -1.41
VPS41-210ENST00000462429 SGSM3Q96HU1 749 aa6.25□□□□□ -1.41
VPS41-210ENST00000462429 NOL6Q9H6R4 1146 aaKnown RBP6.25□□□□□ -1.41
VPS41-210ENST00000462429 SEMA3GQ9NS98 782 aa6.25□□□□□ -1.41
VPS41-210ENST00000462429 APEX2Q9UBZ4 518 aa6.25□□□□□ -1.41
VPS41-210ENST00000462429 AKT3Q9Y243 479 aa6.25□□□□□ -1.41
VPS41-210ENST00000462429 PITPNM2Q9BZ72 1349 aa6.25□□□□□ -1.41
VPS41-210ENST00000462429 MEIS1O00470 390 aa6.24□□□□□ -1.41
VPS41-210ENST00000462429 GSNP06396 782 aa6.24□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms