RNA–Protein interactions for RNA: ENST00000454018.6

SYNE1-214, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,546 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-214ENST00000454018 NEDD1Q8NHV4 660 aa10.33□□□□□ -0.76
SYNE1-214ENST00000454018 CLMNQ96JQ2 1002 aa10.33□□□□□ -0.76
SYNE1-214ENST00000454018 ELP3Q9H9T3 547 aa10.33□□□□□ -0.76
SYNE1-214ENST00000454018 TACC3Q9Y6A5 838 aa10.33□□□□□ -0.76
SYNE1-214ENST00000454018 TAF6LQ9Y6J9 622 aa10.33□□□□□ -0.76
SYNE1-214ENST00000454018 RASSF10A6NK89 507 aa10.32□□□□□ -0.76
SYNE1-214ENST00000454018 USP17L5A8MUK1 530 aa10.32□□□□□ -0.76
SYNE1-214ENST00000454018 KDM4AO75164 1064 aa10.32□□□□□ -0.76
SYNE1-214ENST00000454018 ZBTB48P10074 688 aaPredicted RBP10.32□□□□□ -0.76
SYNE1-214ENST00000454018 HSPA6P17066 643 aa10.32□□□□□ -0.76
SYNE1-214ENST00000454018 PTPRAP18433 802 aa10.32□□□□□ -0.76
SYNE1-214ENST00000454018 TFAP4Q01664 338 aa10.32□□□□□ -0.76
SYNE1-214ENST00000454018 ICA1Q05084 483 aa10.32□□□□□ -0.76
SYNE1-214ENST00000454018 PPATQ06203 517 aa10.32□□□□□ -0.76
SYNE1-214ENST00000454018 PPIL2Q13356 520 aa10.32□□□□□ -0.76
SYNE1-214ENST00000454018 RAB3GAP1Q15042 981 aa10.32□□□□□ -0.76
SYNE1-214ENST00000454018 RGMBQ6NW40 437 aa10.32□□□□□ -0.76
SYNE1-214ENST00000454018 IQCA1Q86XH1 822 aa10.32□□□□□ -0.76
SYNE1-214ENST00000454018 SLC10A4Q96EP9 437 aa10.32□□□□□ -0.76
SYNE1-214ENST00000454018 KANSL2Q9H9L4 492 aa10.32□□□□□ -0.76
SYNE1-214ENST00000454018 AS3MTQ9HBK9 375 aa10.32□□□□□ -0.76
SYNE1-214ENST00000454018 SNX14Q9Y5W7 946 aa10.32□□□□□ -0.76
SYNE1-214ENST00000454018 COL11A1P12107 1806 aaPredicted RBP10.32□□□□□ -0.76
SYNE1-214ENST00000454018 WDR19Q8NEZ3 1342 aa10.31□□□□□ -0.76
SYNE1-214ENST00000454018 RLFQ13129 1914 aa10.31□□□□□ -0.76
SYNE1-214ENST00000454018 IGKV6D-41A0A0C4DH26 115 aa10.31□□□□□ -0.76
SYNE1-214ENST00000454018 CARNS1A5YM72 827 aa10.31□□□□□ -0.76
SYNE1-214ENST00000454018 RCCD1A6NED2 376 aa10.31□□□□□ -0.76
SYNE1-214ENST00000454018 BRD1O95696 1058 aa10.31□□□□□ -0.76
SYNE1-214ENST00000454018 SLC10A3P09131 477 aa10.31□□□□□ -0.76
SYNE1-214ENST00000454018 HMGB1P09429 215 aaKnown RBP10.31□□□□□ -0.76
SYNE1-214ENST00000454018 PSMA5P28066 241 aa10.31□□□□□ -0.76
SYNE1-214ENST00000454018 ZNF157P51786 506 aaPredicted RBP10.31□□□□□ -0.76
SYNE1-214ENST00000454018 PRSS12P56730 875 aa10.31□□□□□ -0.76
SYNE1-214ENST00000454018 SEPT2Q15019 361 aa10.31□□□□□ -0.76
SYNE1-214ENST00000454018 SHROOM1Q2M3G4 852 aaPredicted RBP10.31□□□□□ -0.76
SYNE1-214ENST00000454018 CCDC178Q5BJE1 867 aa10.31□□□□□ -0.76
SYNE1-214ENST00000454018 FAM47AQ5JRC9 791 aa10.31□□□□□ -0.76
SYNE1-214ENST00000454018 RASAL3Q86YV0 1011 aa10.31□□□□□ -0.76
SYNE1-214ENST00000454018 MB21D2Q8IYB1 491 aaPredicted RBP10.31□□□□□ -0.76
SYNE1-214ENST00000454018 OPTNQ96CV9 577 aa10.31□□□□□ -0.76
SYNE1-214ENST00000454018 IL17RAQ96F46 866 aa10.31□□□□□ -0.76
SYNE1-214ENST00000454018 OTUD5Q96G74 571 aa10.31□□□□□ -0.76
SYNE1-214ENST00000454018 WNK4Q96J92 1243 aa10.31□□□□□ -0.76
SYNE1-214ENST00000454018 UBAC1Q9BSL1 405 aa10.31□□□□□ -0.76
SYNE1-214ENST00000454018 MTA3Q9BTC8 594 aa10.31□□□□□ -0.76
SYNE1-214ENST00000454018 SH2D4AQ9H788 454 aa10.31□□□□□ -0.76
SYNE1-214ENST00000454018 INCENPQ9NQS7 918 aa10.31□□□□□ -0.76
SYNE1-214ENST00000454018 TCP11L1Q9NUJ3 509 aa10.31□□□□□ -0.76
SYNE1-214ENST00000454018 A0A0G2JMZ2 1700 aa10.31□□□□□ -0.76
SYNE1-214ENST00000454018 GUCY1A2P33402 732 aa10.3□□□□□ -0.76
SYNE1-214ENST00000454018 MCM5P33992 734 aa10.3□□□□□ -0.76
SYNE1-214ENST00000454018 CLCN6P51797 869 aa10.3□□□□□ -0.76
SYNE1-214ENST00000454018 JAG1P78504 1218 aa10.3□□□□□ -0.76
SYNE1-214ENST00000454018 KCNA1Q09470 495 aa10.3□□□□□ -0.76
SYNE1-214ENST00000454018 SART3Q15020 963 aaKnown RBP10.3□□□□□ -0.76
SYNE1-214ENST00000454018 ZNF280CQ8ND82 737 aa10.3□□□□□ -0.76
SYNE1-214ENST00000454018 CEP95Q96GE4 821 aa10.3□□□□□ -0.76
SYNE1-214ENST00000454018 JAKMIP1Q96N16 626 aaKnown RBP10.3□□□□□ -0.76
SYNE1-214ENST00000454018 NEK1Q96PY6 1258 aa10.3□□□□□ -0.76
SYNE1-214ENST00000454018 WDR18Q9BV38 432 aa10.3□□□□□ -0.76
SYNE1-214ENST00000454018 C22orf23Q9BZE7 217 aa10.3□□□□□ -0.76
SYNE1-214ENST00000454018 ARHGEF10LQ9HCE6 1279 aa10.3□□□□□ -0.76
SYNE1-214ENST00000454018 MTMR4Q9NYA4 1195 aa10.3□□□□□ -0.76
SYNE1-214ENST00000454018 FRMD4AQ9P2Q2 1039 aaPredicted RBP10.3□□□□□ -0.76
SYNE1-214ENST00000454018 SYNPO2Q9UMS6 1093 aa10.3□□□□□ -0.76
SYNE1-214ENST00000454018 ZHX2Q9Y6X8 837 aa10.3□□□□□ -0.76
SYNE1-214ENST00000454018 ERICH2A1L162 156 aa10.29□□□□□ -0.76
SYNE1-214ENST00000454018 TTLL1O95922 423 aa10.29□□□□□ -0.76
SYNE1-214ENST00000454018 ECE1P42892 770 aa10.29□□□□□ -0.76
SYNE1-214ENST00000454018 DEFB115Q30KQ5 88 aa10.29□□□□□ -0.76
SYNE1-214ENST00000454018 ADCK5Q3MIX3 580 aa10.29□□□□□ -0.76
SYNE1-214ENST00000454018 SPRYD7Q5W111 196 aa10.29□□□□□ -0.76
SYNE1-214ENST00000454018 BLOC1S2Q6QNY1 142 aa10.29□□□□□ -0.76
SYNE1-214ENST00000454018 CLEC10AQ8IUN9 316 aa10.29□□□□□ -0.76
SYNE1-214ENST00000454018 ZSCAN10Q96SZ4 725 aaPredicted RBP10.29□□□□□ -0.76
SYNE1-214ENST00000454018 FEZ1Q99689 392 aa10.29□□□□□ -0.76
SYNE1-214ENST00000454018 TM6SF1Q9BZW5 370 aa10.29□□□□□ -0.76
SYNE1-214ENST00000454018 ZSWIM5Q9P217 1185 aa10.29□□□□□ -0.76
SYNE1-214ENST00000454018 NYAP2Q9P242 653 aa10.29□□□□□ -0.76
SYNE1-214ENST00000454018 KCNH4Q9UQ05 1017 aa10.29□□□□□ -0.76
SYNE1-214ENST00000454018 AFG3L2Q9Y4W6 797 aa10.29□□□□□ -0.76
SYNE1-214ENST00000454018 TNKSO95271 1327 aa10.29□□□□□ -0.76
SYNE1-214ENST00000454018 TRIM75PA6NK02 468 aa10.28□□□□□ -0.76
SYNE1-214ENST00000454018 CXCL11O14625 94 aa10.28□□□□□ -0.76
SYNE1-214ENST00000454018 NMT2O60551 498 aa10.28□□□□□ -0.76
SYNE1-214ENST00000454018 CASTP20810 708 aaKnown RBP10.28□□□□□ -0.76
SYNE1-214ENST00000454018 NOVP48745 357 aa10.28□□□□□ -0.76
SYNE1-214ENST00000454018 USP14P54578 494 aa10.28□□□□□ -0.76
SYNE1-214ENST00000454018 ANTXR2P58335 489 aa10.28□□□□□ -0.76
SYNE1-214ENST00000454018 NOGQ13253 232 aa10.28□□□□□ -0.76
SYNE1-214ENST00000454018 SNAPC2Q13487 334 aa10.28□□□□□ -0.76
SYNE1-214ENST00000454018 MTMR2Q13614 643 aa10.28□□□□□ -0.76
SYNE1-214ENST00000454018 CYB5R4Q7L1T6 521 aa10.28□□□□□ -0.76
SYNE1-214ENST00000454018 CCDC84Q86UT8 332 aaPredicted RBP10.28□□□□□ -0.76
SYNE1-214ENST00000454018 DGKHQ86XP1 1220 aa10.28□□□□□ -0.76
SYNE1-214ENST00000454018 ZDHHC16Q969W1 377 aa10.28□□□□□ -0.76
SYNE1-214ENST00000454018 TMEM87BQ96K49 555 aa10.28□□□□□ -0.76
SYNE1-214ENST00000454018 CAPNS2Q96L46 248 aa10.28□□□□□ -0.76
SYNE1-214ENST00000454018 TTC14Q96N46 770 aa10.28□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms