RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 FARP2O94887 1054 aaPredicted RBP5.52□□□□□ -1.53
VPS41-207ENST00000439468 GLI1P08151 1106 aa5.52□□□□□ -1.53
VPS41-207ENST00000439468 SRFP11831 508 aa5.52□□□□□ -1.53
VPS41-207ENST00000439468 NASPP49321 788 aaPredicted RBP5.52□□□□□ -1.53
VPS41-207ENST00000439468 ARID5AQ03989 594 aa5.52□□□□□ -1.53
VPS41-207ENST00000439468 NMIQ13287 307 aaPredicted RBP5.52□□□□□ -1.53
VPS41-207ENST00000439468 GNL2Q13823 731 aaKnown RBP5.52□□□□□ -1.53
VPS41-207ENST00000439468 PKN1Q16512 942 aa5.52□□□□□ -1.53
VPS41-207ENST00000439468 GAB4Q2WGN9 574 aa5.52□□□□□ -1.53
VPS41-207ENST00000439468 MCF2L2Q86YR7 1114 aa5.52□□□□□ -1.53
VPS41-207ENST00000439468 KSR1Q8IVT5 923 aa5.52□□□□□ -1.53
VPS41-207ENST00000439468 SLITRK4Q8IW52 837 aa5.52□□□□□ -1.53
VPS41-207ENST00000439468 POU5F2Q8N7G0 328 aa5.52□□□□□ -1.53
VPS41-207ENST00000439468 ABHD4Q8TB40 342 aa5.52□□□□□ -1.53
VPS41-207ENST00000439468 RASGRP4Q8TDF6 673 aa5.52□□□□□ -1.53
VPS41-207ENST00000439468 LIN37Q96GY3 246 aaPredicted RBP5.52□□□□□ -1.53
VPS41-207ENST00000439468 CNNM2Q9H8M5 875 aa5.52□□□□□ -1.53
VPS41-207ENST00000439468 C19orf73Q9NVV2 129 aa5.52□□□□□ -1.53
VPS41-207ENST00000439468 FAM53CQ9NYF3 392 aa5.52□□□□□ -1.53
VPS41-207ENST00000439468 LOC105371045A0A1W2PR82 267 aa5.51□□□□□ -1.53
VPS41-207ENST00000439468 GTF2F1P35269 517 aaKnown RBP eCLIP5.51□□□□□ -1.53
VPS41-207ENST00000439468 ERVFC1P60507 584 aa5.51□□□□□ -1.53
VPS41-207ENST00000439468 CDCP2Q5VXM1 449 aa5.51□□□□□ -1.53
VPS41-207ENST00000439468 CCDC81Q6ZN84 652 aa5.51□□□□□ -1.53
VPS41-207ENST00000439468 MYLIPQ8WY64 445 aa5.51□□□□□ -1.53
VPS41-207ENST00000439468 GMLQ99445 158 aa5.51□□□□□ -1.53
VPS41-207ENST00000439468 SLC38A3Q99624 504 aa5.51□□□□□ -1.53
VPS41-207ENST00000439468 MRVI1Q9Y6F6 885 aa5.51□□□□□ -1.53
VPS41-207ENST00000439468 ZNF503-AS2A6NEH8 195 aa5.5□□□□□ -1.53
VPS41-207ENST00000439468 MEIS1O00470 390 aa5.5□□□□□ -1.53
VPS41-207ENST00000439468 C8AP07357 584 aa5.5□□□□□ -1.53
VPS41-207ENST00000439468 FGRP09769 529 aa5.5□□□□□ -1.53
VPS41-207ENST00000439468 NME1P15531 152 aaKnown RBP5.5□□□□□ -1.53
VPS41-207ENST00000439468 TMC3Q7Z5M5 1100 aa5.5□□□□□ -1.53
VPS41-207ENST00000439468 VPS37DQ86XT2 251 aa5.5□□□□□ -1.53
VPS41-207ENST00000439468 OXR1Q8N573 874 aa5.5□□□□□ -1.53
VPS41-207ENST00000439468 SLC6A18Q96N87 628 aa5.5□□□□□ -1.53
VPS41-207ENST00000439468 DIRC2Q96SL1 478 aa5.5□□□□□ -1.53
VPS41-207ENST00000439468 BUD13Q9BRD0 619 aaKnown RBP eCLIP5.5□□□□□ -1.53
VPS41-207ENST00000439468 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP5.5□□□□□ -1.53
VPS41-207ENST00000439468 FBXL21Q9UKT6 434 aa5.5□□□□□ -1.53
VPS41-207ENST00000439468 PPT2Q9UMR5 302 aa5.5□□□□□ -1.53
VPS41-207ENST00000439468 FKTNO75072 461 aa5.49□□□□□ -1.53
VPS41-207ENST00000439468 IMPDH2P12268 514 aa5.49□□□□□ -1.53
VPS41-207ENST00000439468 ATP2B1P20020 1258 aa5.49□□□□□ -1.53
VPS41-207ENST00000439468 RPL10P27635 214 aaKnown RBP5.49□□□□□ -1.53
VPS41-207ENST00000439468 TRHRP34981 398 aaPredicted RBP5.49□□□□□ -1.53
VPS41-207ENST00000439468 DUSP4Q13115 394 aa5.49□□□□□ -1.53
VPS41-207ENST00000439468 SNW1Q13573 536 aaKnown RBP5.49□□□□□ -1.53
VPS41-207ENST00000439468 ZNF124Q15973 351 aa5.49□□□□□ -1.53
VPS41-207ENST00000439468 NBPF12Q5TAG4 269 aaPredicted RBP5.49□□□□□ -1.53
VPS41-207ENST00000439468 VWCEQ96DN2 955 aa5.49□□□□□ -1.53
VPS41-207ENST00000439468 DNAJC2Q99543 621 aaKnown RBP5.49□□□□□ -1.53
VPS41-207ENST00000439468 ZMYM5Q9UJ78 669 aa5.49□□□□□ -1.53
VPS41-207ENST00000439468 MEIS3P2A8K0S8 358 aa5.48□□□□□ -1.53
VPS41-207ENST00000439468 IQCJ-SCHIP1C9J366 451 aaPredicted RBP5.48□□□□□ -1.53
VPS41-207ENST00000439468 ZGLP1P0C6A0 271 aa5.48□□□□□ -1.53
VPS41-207ENST00000439468 ETFBP38117 255 aa5.48□□□□□ -1.53
VPS41-207ENST00000439468 CCNFP41002 786 aa5.48□□□□□ -1.53
VPS41-207ENST00000439468 PCBP3P57721 371 aaKnown RBP5.48□□□□□ -1.53
VPS41-207ENST00000439468 SF3A1Q15459 793 aaKnown RBP5.48□□□□□ -1.53
VPS41-207ENST00000439468 NBPF9Q3BBW0 867 aa5.48□□□□□ -1.53
VPS41-207ENST00000439468 PRR23BQ6ZRT6 265 aa5.48□□□□□ -1.53
VPS41-207ENST00000439468 WAPLQ7Z5K2 1190 aa5.48□□□□□ -1.53
VPS41-207ENST00000439468 TMEM192Q8IY95 271 aa5.48□□□□□ -1.53
VPS41-207ENST00000439468 PDZD8Q8NEN9 1154 aa5.48□□□□□ -1.53
VPS41-207ENST00000439468 SYTL5Q8TDW5 730 aaPredicted RBP5.48□□□□□ -1.53
VPS41-207ENST00000439468 SLC9A7Q96T83 725 aa5.48□□□□□ -1.53
VPS41-207ENST00000439468 HDAC8Q9BY41 377 aa5.48□□□□□ -1.53
VPS41-207ENST00000439468 FOXP3Q9BZS1 431 aa5.48□□□□□ -1.53
VPS41-207ENST00000439468 NSUN3Q9H649 340 aaKnown RBP5.48□□□□□ -1.53
VPS41-207ENST00000439468 C19orf44Q9H6X5 657 aa5.48□□□□□ -1.53
VPS41-207ENST00000439468 ZNRF3Q9ULT6 936 aa5.48□□□□□ -1.53
VPS41-207ENST00000439468 PCDHB12Q9Y5F1 795 aa5.48□□□□□ -1.53
VPS41-207ENST00000439468 FITM1A5D6W6 292 aa5.47□□□□□ -1.53
VPS41-207ENST00000439468 TNFRSF10CO14798 259 aa5.47□□□□□ -1.53
VPS41-207ENST00000439468 PRAMEF1O95521 474 aa5.47□□□□□ -1.53
VPS41-207ENST00000439468 HPXP02790 462 aa5.47□□□□□ -1.53
VPS41-207ENST00000439468 SYPP08247 313 aa5.47□□□□□ -1.53
VPS41-207ENST00000439468 SOX9P48436 509 aa5.47□□□□□ -1.53
VPS41-207ENST00000439468 TEKQ02763 1124 aa5.47□□□□□ -1.53
VPS41-207ENST00000439468 TDRD10Q5VZ19 366 aaKnown RBP5.47□□□□□ -1.53
VPS41-207ENST00000439468 RNF111Q6ZNA4 994 aa5.47□□□□□ -1.53
VPS41-207ENST00000439468 CCDC144CPQ8IYA2 1237 aa5.47□□□□□ -1.53
VPS41-207ENST00000439468 ZNF655Q8N720 491 aaPredicted RBP5.47□□□□□ -1.53
VPS41-207ENST00000439468 DAGLBQ8NCG7 672 aa5.47□□□□□ -1.53
VPS41-207ENST00000439468 ENOX1Q8TC92 643 aaKnown RBP5.47□□□□□ -1.53
VPS41-207ENST00000439468 TCTN2Q96GX1 697 aa5.47□□□□□ -1.53
VPS41-207ENST00000439468 SEC16BQ96JE7 1060 aa5.47□□□□□ -1.53
VPS41-207ENST00000439468 FAM84AQ96KN4 292 aa5.47□□□□□ -1.53
VPS41-207ENST00000439468 DHRS1Q96LJ7 313 aa5.47□□□□□ -1.53
VPS41-207ENST00000439468 CRBNQ96SW2 442 aa5.47□□□□□ -1.53
VPS41-207ENST00000439468 PRDM14Q9GZV8 571 aa5.47□□□□□ -1.53
VPS41-207ENST00000439468 RNF32Q9H0A6 362 aa5.47□□□□□ -1.53
VPS41-207ENST00000439468 FAM86C1Q9NVL1 165 aa5.47□□□□□ -1.53
VPS41-207ENST00000439468 GFOD1Q9NXC2 390 aa5.47□□□□□ -1.53
VPS41-207ENST00000439468 GPR160Q9UJ42 338 aa5.47□□□□□ -1.53
VPS41-207ENST00000439468 TCFL5Q9UL49 500 aa5.47□□□□□ -1.53
VPS41-207ENST00000439468 SIGLEC6O43699 453 aa5.46□□□□□ -1.54
VPS41-207ENST00000439468 SSBP05455 408 aaKnown RBP eCLIP5.46□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms