RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 IFIH1Q9BYX4 1025 aaKnown RBP13.32□□□□□ -0.28
CCDC88A-207ENST00000436346 TACC3Q9Y6A5 838 aa13.32□□□□□ -0.28
CCDC88A-207ENST00000436346 LRRC47Q8N1G4 583 aaKnown RBP13.32□□□□□ -0.28
CCDC88A-207ENST00000436346 ZBTB40Q9NUA8 1239 aa13.32□□□□□ -0.28
CCDC88A-207ENST00000436346 LRWD1Q9UFC0 647 aa13.32□□□□□ -0.28
CCDC88A-207ENST00000436346 KCNJ14Q9UNX9 436 aa13.32□□□□□ -0.28
CCDC88A-207ENST00000436346 XRCC5P13010 732 aaKnown RBP13.31□□□□□ -0.28
CCDC88A-207ENST00000436346 CCDC105Q8IYK2 499 aa13.31□□□□□ -0.28
CCDC88A-207ENST00000436346 PSMB7Q99436 277 aa13.31□□□□□ -0.28
CCDC88A-207ENST00000436346 EBAG9O00559 213 aa13.31□□□□□ -0.28
CCDC88A-207ENST00000436346 KIAA0825Q8IV33 1275 aa13.31□□□□□ -0.28
CCDC88A-207ENST00000436346 ALAS1P13196 640 aa13.31□□□□□ -0.28
CCDC88A-207ENST00000436346 PEX26Q7Z412 305 aa13.31□□□□□ -0.28
CCDC88A-207ENST00000436346 MYO1AQ9UBC5 1043 aa13.31□□□□□ -0.28
CCDC88A-207ENST00000436346 NEURL1BA8MQ27 555 aa13.31□□□□□ -0.28
CCDC88A-207ENST00000436346 KRT12Q99456 494 aa13.31□□□□□ -0.28
CCDC88A-207ENST00000436346 SUGCTQ9HAC7 445 aa13.31□□□□□ -0.28
CCDC88A-207ENST00000436346 LIG4P49917 911 aa13.31□□□□□ -0.28
CCDC88A-207ENST00000436346 NT5C3AQ9H0P0 336 aa13.31□□□□□ -0.28
CCDC88A-207ENST00000436346 BLZF1Q9H2G9 400 aa13.31□□□□□ -0.28
CCDC88A-207ENST00000436346 PPEF1O14829 653 aaPredicted RBP13.31□□□□□ -0.28
CCDC88A-207ENST00000436346 LACTBP83111 547 aaPredicted RBP13.31□□□□□ -0.28
CCDC88A-207ENST00000436346 CCDC170Q8IYT3 715 aa13.31□□□□□ -0.28
CCDC88A-207ENST00000436346 ZNF277Q9NRM2 450 aaPredicted RBP13.31□□□□□ -0.28
CCDC88A-207ENST00000436346 MED23Q9ULK4 1368 aa13.31□□□□□ -0.28
CCDC88A-207ENST00000436346 ERVV-2B6SEH9 535 aa13.3□□□□□ -0.28
CCDC88A-207ENST00000436346 DLATP10515 647 aaKnown RBP13.3□□□□□ -0.28
CCDC88A-207ENST00000436346 ZNF131P52739 623 aa13.3□□□□□ -0.28
CCDC88A-207ENST00000436346 CERKLQ49MI3 558 aaPredicted RBP13.3□□□□□ -0.28
CCDC88A-207ENST00000436346 SLFN12Q8IYM2 578 aa13.3□□□□□ -0.28
CCDC88A-207ENST00000436346 SMCO2A6NFE2 343 aa13.3□□□□□ -0.28
CCDC88A-207ENST00000436346 KIF11P52732 1056 aa13.3□□□□□ -0.28
CCDC88A-207ENST00000436346 LSM14BQ9BX40 385 aaKnown RBP13.3□□□□□ -0.28
CCDC88A-207ENST00000436346 NUF2Q9BZD4 464 aa13.3□□□□□ -0.28
CCDC88A-207ENST00000436346 TYW5A2RUC4 315 aaKnown RBP13.3□□□□□ -0.28
CCDC88A-207ENST00000436346 IGBP1P78318 339 aa13.3□□□□□ -0.28
CCDC88A-207ENST00000436346 PABPC4Q13310 644 aaKnown RBP eCLIP13.3□□□□□ -0.286e-6■■■■■ 28.1
CCDC88A-207ENST00000436346 SH2D4BQ5SQS7 431 aa13.3□□□□□ -0.28
CCDC88A-207ENST00000436346 SDCCAG8Q86SQ7 713 aaPredicted RBP13.3□□□□□ -0.28
CCDC88A-207ENST00000436346 ZBTB8OSQ8IWT0 167 aa13.3□□□□□ -0.28
CCDC88A-207ENST00000436346 PZPP20742 1482 aa13.3□□□□□ -0.28
CCDC88A-207ENST00000436346 NELFCDQ8IXH7 590 aa13.3□□□□□ -0.28
CCDC88A-207ENST00000436346 OTUD7AQ8TE49 926 aaPredicted RBP13.3□□□□□ -0.28
CCDC88A-207ENST00000436346 SUCLG2Q96I99 432 aa13.3□□□□□ -0.28
CCDC88A-207ENST00000436346 MAP3K4Q9Y6R4 1608 aa13.3□□□□□ -0.28
CCDC88A-207ENST00000436346 DIXDC1Q155Q3 683 aa13.3□□□□□ -0.28
CCDC88A-207ENST00000436346 DPP9Q86TI2 863 aa13.3□□□□□ -0.28
CCDC88A-207ENST00000436346 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP13.3□□□□□ -0.28
CCDC88A-207ENST00000436346 CHURC1Q8WUH1 139 aa13.3□□□□□ -0.28
CCDC88A-207ENST00000436346 PPARDQ03181 441 aa13.3□□□□□ -0.28
CCDC88A-207ENST00000436346 CCPG1Q9ULG6 757 aa13.3□□□□□ -0.28
CCDC88A-207ENST00000436346 ARHGAP44Q17R89 818 aa13.3□□□□□ -0.28
CCDC88A-207ENST00000436346 MUM1L1Q5H9M0 696 aa13.3□□□□□ -0.28
CCDC88A-207ENST00000436346 SECISBP2LQ93073 1101 aaKnown RBP13.3□□□□□ -0.28
CCDC88A-207ENST00000436346 LRRIQ1Q96JM4 1722 aa13.29□□□□□ -0.28
CCDC88A-207ENST00000436346 NOP9Q86U38 636 aaKnown RBP13.29□□□□□ -0.28
CCDC88A-207ENST00000436346 ZC3H13Q5T200 1668 aaKnown RBP13.29□□□□□ -0.28
CCDC88A-207ENST00000436346 POLR2MP0CAP2 368 aa13.29□□□□□ -0.28
CCDC88A-207ENST00000436346 DOK7Q18PE1 504 aa13.29□□□□□ -0.28
CCDC88A-207ENST00000436346 SYNJ2BP-COX16A0A087WUM0 186 aa13.29□□□□□ -0.28
CCDC88A-207ENST00000436346 TMOD1P28289 359 aa13.29□□□□□ -0.28
CCDC88A-207ENST00000436346 PNOCQ13519 176 aa13.29□□□□□ -0.28
CCDC88A-207ENST00000436346 TYW1BQ6NUM6 668 aa13.29□□□□□ -0.28
CCDC88A-207ENST00000436346 NBPF11Q86T75 865 aa13.29□□□□□ -0.28
CCDC88A-207ENST00000436346 RSPH3Q86UC2 560 aa13.29□□□□□ -0.28
CCDC88A-207ENST00000436346 MCUR1Q96AQ8 359 aa13.29□□□□□ -0.28
CCDC88A-207ENST00000436346 NUP58Q9BVL2 599 aa13.29□□□□□ -0.28
CCDC88A-207ENST00000436346 COX16Q9P0S2 106 aa13.29□□□□□ -0.28
CCDC88A-207ENST00000436346 HGSO14964 777 aaPredicted RBP13.29□□□□□ -0.28
CCDC88A-207ENST00000436346 C1orf112Q9NSG2 853 aa13.29□□□□□ -0.28
CCDC88A-207ENST00000436346 PRKAG2Q9UGJ0 569 aa13.29□□□□□ -0.28
CCDC88A-207ENST00000436346 TRPM1Q7Z4N2 1603 aa13.29□□□□□ -0.28
CCDC88A-207ENST00000436346 TFAP4Q01664 338 aa13.29□□□□□ -0.28
CCDC88A-207ENST00000436346 TARBP1Q13395 1621 aaKnown RBP13.29□□□□□ -0.28
CCDC88A-207ENST00000436346 ICA1Q05084 483 aa13.29□□□□□ -0.28
CCDC88A-207ENST00000436346 KBTBD3Q8NAB2 608 aa13.29□□□□□ -0.28
CCDC88A-207ENST00000436346 MAN1A1P33908 653 aa13.29□□□□□ -0.28
CCDC88A-207ENST00000436346 ADPGKQ9BRR6 497 aa13.29□□□□□ -0.28
CCDC88A-207ENST00000436346 ABT1Q9ULW3 272 aaKnown RBP13.29□□□□□ -0.28
CCDC88A-207ENST00000436346 AKT3Q9Y243 479 aa13.29□□□□□ -0.28
CCDC88A-207ENST00000436346 KDM2BQ8NHM5 1336 aa13.29□□□□□ -0.28
CCDC88A-207ENST00000436346 HOXB7P09629 217 aa13.28□□□□□ -0.28
CCDC88A-207ENST00000436346 GPKOWQ92917 476 aaPredicted RBP eCLIP13.28□□□□□ -0.282e-6■■□□□ 12.1
CCDC88A-207ENST00000436346 IQGAP3Q86VI3 1631 aa13.28□□□□□ -0.28
CCDC88A-207ENST00000436346 TNNC2P02585 160 aa13.28□□□□□ -0.28
CCDC88A-207ENST00000436346 PSMD6Q15008 389 aa13.28□□□□□ -0.28
CCDC88A-207ENST00000436346 FLAD1Q8NFF5 587 aa13.28□□□□□ -0.28
CCDC88A-207ENST00000436346 FAM207AQ9NSI2 230 aaPredicted RBP13.28□□□□□ -0.28
CCDC88A-207ENST00000436346 LRRIQ4A6NIV6 560 aa13.28□□□□□ -0.28
CCDC88A-207ENST00000436346 GNA14O95837 355 aa13.28□□□□□ -0.28
CCDC88A-207ENST00000436346 ZAP70P43403 619 aa13.28□□□□□ -0.28
CCDC88A-207ENST00000436346 POLA2Q14181 598 aa13.28□□□□□ -0.28
CCDC88A-207ENST00000436346 CDC37L1Q7L3B6 337 aa13.28□□□□□ -0.28
CCDC88A-207ENST00000436346 MCF2L2Q86YR7 1114 aa13.28□□□□□ -0.28
CCDC88A-207ENST00000436346 SDR42E1Q8WUS8 393 aa13.28□□□□□ -0.28
CCDC88A-207ENST00000436346 RPS6KC1Q96S38 1066 aa13.28□□□□□ -0.28
CCDC88A-207ENST00000436346 SPICE1Q8N0Z3 855 aa13.28□□□□□ -0.28
CCDC88A-207ENST00000436346 AFAP1L1Q8TED9 768 aa13.28□□□□□ -0.28
CCDC88A-207ENST00000436346 GLI2P10070 1586 aa13.28□□□□□ -0.28
CCDC88A-207ENST00000436346 GBP1P32455 592 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms