RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 C2CD5Q86YS7 1000 aa16.99■□□□□ 0.31
PTPRF-206ENST00000429895 PALM2Q8IXS6 379 aa16.99■□□□□ 0.31
PTPRF-206ENST00000429895 KDRP35968 1356 aa16.99■□□□□ 0.31
PTPRF-206ENST00000429895 USP17L12C9JPN9 530 aa16.99■□□□□ 0.31
PTPRF-206ENST00000429895 USP17L21D6R901 530 aa16.99■□□□□ 0.31
PTPRF-206ENST00000429895 ZNF75DP51815 510 aa16.99■□□□□ 0.31
PTPRF-206ENST00000429895 ZBTB8OSQ8IWT0 167 aa16.99■□□□□ 0.31
PTPRF-206ENST00000429895 ARPP21Q9UBL0 812 aaPredicted RBP16.99■□□□□ 0.31
PTPRF-206ENST00000429895 GBP1P32455 592 aa16.99■□□□□ 0.31
PTPRF-206ENST00000429895 ANKRD35Q8N283 1001 aa16.99■□□□□ 0.31
PTPRF-206ENST00000429895 SDR42E1Q8WUS8 393 aa16.99■□□□□ 0.31
PTPRF-206ENST00000429895 TNNC2P02585 160 aa16.98■□□□□ 0.31
PTPRF-206ENST00000429895 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.98■□□□□ 0.31
PTPRF-206ENST00000429895 PSTPIP2Q9H939 334 aa16.98■□□□□ 0.31
PTPRF-206ENST00000429895 SAT1P21673 171 aa16.98■□□□□ 0.31
PTPRF-206ENST00000429895 CTSWP56202 376 aa16.98■□□□□ 0.31
PTPRF-206ENST00000429895 ERO1AQ96HE7 468 aa16.98■□□□□ 0.31
PTPRF-206ENST00000429895 RAB20Q9NX57 234 aa16.98■□□□□ 0.31
PTPRF-206ENST00000429895 GADD45BO75293 160 aaPredicted RBP16.98■□□□□ 0.31
PTPRF-206ENST00000429895 NXNQ6DKJ4 435 aa16.98■□□□□ 0.31
PTPRF-206ENST00000429895 TMTC1Q8IUR5 882 aa16.98■□□□□ 0.31
PTPRF-206ENST00000429895 MIPOL1Q8TD10 442 aa16.98■□□□□ 0.31
PTPRF-206ENST00000429895 RPS8P62241 208 aaKnown RBP16.98■□□□□ 0.31
PTPRF-206ENST00000429895 DPY19L2Q6NUT2 758 aa16.98■□□□□ 0.31
PTPRF-206ENST00000429895 DCPSQ96C86 337 aaKnown RBP16.98■□□□□ 0.31
PTPRF-206ENST00000429895 GDAP1L1Q96MZ0 367 aa16.98■□□□□ 0.31
PTPRF-206ENST00000429895 KRT12Q99456 494 aa16.98■□□□□ 0.31
PTPRF-206ENST00000429895 ZNF518AQ6AHZ1 1483 aa16.98■□□□□ 0.31
PTPRF-206ENST00000429895 ZMYM3Q14202 1370 aa16.98■□□□□ 0.31
PTPRF-206ENST00000429895 RPS6KA2Q15349 733 aa16.98■□□□□ 0.31
PTPRF-206ENST00000429895 SH2D4BQ5SQS7 431 aa16.98■□□□□ 0.31
PTPRF-206ENST00000429895 RSPH3Q86UC2 560 aa16.98■□□□□ 0.31
PTPRF-206ENST00000429895 WDR46O15213 610 aaKnown RBP16.97■□□□□ 0.31
PTPRF-206ENST00000429895 POLR2MP0CAP2 368 aa16.97■□□□□ 0.31
PTPRF-206ENST00000429895 DLATP10515 647 aaKnown RBP16.97■□□□□ 0.31
PTPRF-206ENST00000429895 PLCB4Q15147 1175 aa16.97■□□□□ 0.31
PTPRF-206ENST00000429895 ANKFY1Q9P2R3 1169 aa16.97■□□□□ 0.31
PTPRF-206ENST00000429895 SBNO1A3KN83 1393 aa16.97■□□□□ 0.31
PTPRF-206ENST00000429895 SGSM2O43147 1006 aa16.97■□□□□ 0.31
PTPRF-206ENST00000429895 CFAP221Q4G0U5 840 aa16.97■□□□□ 0.31
PTPRF-206ENST00000429895 SND1Q7KZF4 910 aaKnown RBP eCLIP16.97■□□□□ 0.311e-16■■■□□ 18.3
PTPRF-206ENST00000429895 SKA2Q8WVK7 121 aaPredicted RBP16.97■□□□□ 0.31
PTPRF-206ENST00000429895 IFIH1Q9BYX4 1025 aaKnown RBP16.97■□□□□ 0.31
PTPRF-206ENST00000429895 NT5C3AQ9H0P0 336 aa16.97■□□□□ 0.31
PTPRF-206ENST00000429895 GPKOWQ92917 476 aaPredicted RBP eCLIP16.97■□□□□ 0.31
PTPRF-206ENST00000429895 CCDC94Q9BW85 323 aaPredicted RBP16.97■□□□□ 0.31
PTPRF-206ENST00000429895 GOLGA6BA6NDN3 693 aa16.97■□□□□ 0.31
PTPRF-206ENST00000429895 TNFAIP1Q13829 316 aa16.97■□□□□ 0.31
PTPRF-206ENST00000429895 GBP6Q6ZN66 633 aa16.97■□□□□ 0.31
PTPRF-206ENST00000429895 B4GALNT4Q76KP1 1039 aa16.97■□□□□ 0.31
PTPRF-206ENST00000429895 FEZ2Q9UHY8 353 aaPredicted RBP16.97■□□□□ 0.31
PTPRF-206ENST00000429895 BUB1BO60566 1050 aaPredicted RBP16.97■□□□□ 0.31
PTPRF-206ENST00000429895 IL13P35225 146 aa16.97■□□□□ 0.31
PTPRF-206ENST00000429895 VPS41P49754 854 aa16.97■□□□□ 0.31
PTPRF-206ENST00000429895 ADKP55263 362 aaKnown RBP16.97■□□□□ 0.31
PTPRF-206ENST00000429895 DENND2CQ68D51 928 aa16.97■□□□□ 0.31
PTPRF-206ENST00000429895 ZNF654Q8IZM8 581 aa16.97■□□□□ 0.31
PTPRF-206ENST00000429895 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP16.97■□□□□ 0.31
PTPRF-206ENST00000429895 KDM3AQ9Y4C1 1321 aa16.97■□□□□ 0.31
PTPRF-206ENST00000429895 ELF2Q15723 593 aa16.96■□□□□ 0.31
PTPRF-206ENST00000429895 ZNF496Q96IT1 587 aaPredicted RBP16.96■□□□□ 0.31
PTPRF-206ENST00000429895 ZSCAN10Q96SZ4 725 aaPredicted RBP16.96■□□□□ 0.31
PTPRF-206ENST00000429895 ATP8A2Q9NTI2 1148 aa16.96■□□□□ 0.31
PTPRF-206ENST00000429895 AMFRQ9UKV5 643 aa16.96■□□□□ 0.31
PTPRF-206ENST00000429895 BCAMP50895 628 aa16.96■□□□□ 0.31
PTPRF-206ENST00000429895 GUCY2FP51841 1108 aa16.96■□□□□ 0.31
PTPRF-206ENST00000429895 CERKLQ49MI3 558 aaPredicted RBP16.96■□□□□ 0.31
PTPRF-206ENST00000429895 SCYL1Q96KG9 808 aa16.96■□□□□ 0.31
PTPRF-206ENST00000429895 OGFRQ9NZT2 677 aa16.96■□□□□ 0.31
PTPRF-206ENST00000429895 PARD3Q8TEW0 1356 aa16.96■□□□□ 0.31
PTPRF-206ENST00000429895 ATF7P17544 494 aaPredicted RBP16.96■□□□□ 0.31
PTPRF-206ENST00000429895 NME8Q8N427 588 aa16.96■□□□□ 0.31
PTPRF-206ENST00000429895 XRCC5P13010 732 aaKnown RBP16.96■□□□□ 0.31
PTPRF-206ENST00000429895 PAK2Q13177 524 aa16.96■□□□□ 0.31
PTPRF-206ENST00000429895 PANK4Q9NVE7 773 aa16.96■□□□□ 0.31
PTPRF-206ENST00000429895 POLA2Q14181 598 aa16.96■□□□□ 0.3
PTPRF-206ENST00000429895 ADAT2Q7Z6V5 191 aaKnown RBP16.95■□□□□ 0.3
PTPRF-206ENST00000429895 ADPGKQ9BRR6 497 aa16.95■□□□□ 0.3
PTPRF-206ENST00000429895 ATP2A3Q93084 1043 aa16.95■□□□□ 0.3
PTPRF-206ENST00000429895 BUB1O43683 1085 aa16.95■□□□□ 0.3
PTPRF-206ENST00000429895 RUFY4Q6ZNE9 571 aa16.95■□□□□ 0.3
PTPRF-206ENST00000429895 BTDP43251 543 aa16.95■□□□□ 0.3
PTPRF-206ENST00000429895 KDM2BQ8NHM5 1336 aa16.95■□□□□ 0.3
PTPRF-206ENST00000429895 NBPF3Q9H094 633 aa16.94■□□□□ 0.3
PTPRF-206ENST00000429895 ESYT2A0FGR8 921 aa16.94■□□□□ 0.3
PTPRF-206ENST00000429895 LRRIQ4A6NIV6 560 aa16.94■□□□□ 0.3
PTPRF-206ENST00000429895 MRPL11Q9Y3B7 192 aaKnown RBP16.94■□□□□ 0.3
PTPRF-206ENST00000429895 PPME1Q9Y570 386 aa16.94■□□□□ 0.3
PTPRF-206ENST00000429895 STAT1P42224 750 aa16.94■□□□□ 0.3
PTPRF-206ENST00000429895 KAZNQ674X7 775 aa16.94■□□□□ 0.3
PTPRF-206ENST00000429895 MYOCDQ8IZQ8 938 aa16.94■□□□□ 0.3
PTPRF-206ENST00000429895 DDX25Q9UHL0 483 aaKnown RBP16.94■□□□□ 0.3
PTPRF-206ENST00000429895 POLGP54098 1239 aaPredicted RBP16.94■□□□□ 0.3
PTPRF-206ENST00000429895 PPP2R5BQ15173 497 aa16.94■□□□□ 0.3
PTPRF-206ENST00000429895 Q3C1V9 767 aa16.94■□□□□ 0.3
PTPRF-206ENST00000429895 SULF1Q8IWU6 871 aa16.94■□□□□ 0.3
PTPRF-206ENST00000429895 BLIDQ8IZY5 108 aa16.94■□□□□ 0.3
PTPRF-206ENST00000429895 MAIP1Q8WWC4 291 aa16.94■□□□□ 0.3
PTPRF-206ENST00000429895 FAM114A2Q9NRY5 505 aa16.94■□□□□ 0.3
PTPRF-206ENST00000429895 PPP2R5AQ15172 486 aa16.94■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms