RNA–Protein interactions for RNA: ENST00000427526.6

LIG1-202, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,027 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-202ENST00000427526 CCDC34Q96HJ3 373 aa16.23■□□□□ 0.19
LIG1-202ENST00000427526 PANX2Q96RD6 677 aa16.23■□□□□ 0.19
LIG1-202ENST00000427526 ZRANB2O95218 330 aaKnown RBP eCLIP16.23■□□□□ 0.19
LIG1-202ENST00000427526 IQCA1Q86XH1 822 aa16.23■□□□□ 0.19
LIG1-202ENST00000427526 MNS1Q8NEH6 495 aa16.23■□□□□ 0.19
LIG1-202ENST00000427526 RPGRQ92834 1020 aaKnown RBP16.23■□□□□ 0.19
LIG1-202ENST00000427526 KIFC2Q96AC6 838 aa16.23■□□□□ 0.19
LIG1-202ENST00000427526 BAZ2AQ9UIF9 1905 aaKnown RBP16.23■□□□□ 0.19
LIG1-202ENST00000427526 PPP1R3GB7ZBB8 358 aa16.22■□□□□ 0.19
LIG1-202ENST00000427526 CASP1P29466 404 aa16.22■□□□□ 0.19
LIG1-202ENST00000427526 GNG11P61952 73 aa16.22■□□□□ 0.19
LIG1-202ENST00000427526 DDR1Q08345 913 aa16.22■□□□□ 0.19
LIG1-202ENST00000427526 TMTC3Q6ZXV5 915 aa16.22■□□□□ 0.19
LIG1-202ENST00000427526 FAM177A1Q8N128 213 aaPredicted RBP16.22■□□□□ 0.19
LIG1-202ENST00000427526 ADD3Q9UEY8 706 aaKnown RBP16.22■□□□□ 0.19
LIG1-202ENST00000427526 DDAH1O94760 285 aa16.22■□□□□ 0.19
LIG1-202ENST00000427526 CASQ1P31415 396 aa16.22■□□□□ 0.19
LIG1-202ENST00000427526 AKR1B15C9JRZ8 316 aaPredicted RBP16.21■□□□□ 0.19
LIG1-202ENST00000427526 ATP2C1P98194 919 aaPredicted RBP16.21■□□□□ 0.19
LIG1-202ENST00000427526 EVX2Q03828 476 aa16.21■□□□□ 0.19
LIG1-202ENST00000427526 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.21■□□□□ 0.19
LIG1-202ENST00000427526 ZNF174Q15697 407 aa16.21■□□□□ 0.19
LIG1-202ENST00000427526 MRFAP1Q9Y605 127 aa16.21■□□□□ 0.19
LIG1-202ENST00000427526 CNTNAP5Q8WYK1 1306 aa16.21■□□□□ 0.19
LIG1-202ENST00000427526 SYNRGQ9UMZ2 1314 aa16.21■□□□□ 0.19
LIG1-202ENST00000427526 GPSM2P81274 684 aa16.21■□□□□ 0.18
LIG1-202ENST00000427526 MTF1Q14872 753 aa16.21■□□□□ 0.18
LIG1-202ENST00000427526 TTC38Q5R3I4 469 aa16.21■□□□□ 0.18
LIG1-202ENST00000427526 SRBD1Q8N5C6 995 aaKnown RBP16.21■□□□□ 0.18
LIG1-202ENST00000427526 USP17L12C9JPN9 530 aa16.2■□□□□ 0.18
LIG1-202ENST00000427526 USP17L21D6R901 530 aa16.2■□□□□ 0.18
LIG1-202ENST00000427526 TPM1P09493 284 aa16.2■□□□□ 0.18
LIG1-202ENST00000427526 PNMA6AP0CW24 399 aaPredicted RBP16.2■□□□□ 0.18
LIG1-202ENST00000427526 ST5P78524 1137 aa16.2■□□□□ 0.18
LIG1-202ENST00000427526 PTGDRQ13258 359 aa16.2■□□□□ 0.18
LIG1-202ENST00000427526 E2F4Q16254 413 aa16.2■□□□□ 0.18
LIG1-202ENST00000427526 CRY2Q49AN0 593 aa16.2■□□□□ 0.18
LIG1-202ENST00000427526 DESI2Q9BSY9 194 aa16.2■□□□□ 0.18
LIG1-202ENST00000427526 BRMS1Q9HCU9 246 aa16.2■□□□□ 0.18
LIG1-202ENST00000427526 LEMD3Q9Y2U8 911 aa16.2■□□□□ 0.18
LIG1-202ENST00000427526 STX17P56962 302 aa16.2■□□□□ 0.18
LIG1-202ENST00000427526 RBL2Q08999 1139 aa16.2■□□□□ 0.18
LIG1-202ENST00000427526 KLHL10Q6JEL2 608 aa16.2■□□□□ 0.18
LIG1-202ENST00000427526 MRPL44Q9H9J2 332 aaKnown RBP16.2■□□□□ 0.18
LIG1-202ENST00000427526 XDHP47989 1333 aa16.19■□□□□ 0.18
LIG1-202ENST00000427526 PDS5AQ29RF7 1337 aaKnown RBP16.19■□□□□ 0.18
LIG1-202ENST00000427526 SOWAHDA6NJG2 315 aa16.19■□□□□ 0.18
LIG1-202ENST00000427526 ORC4O43929 436 aa16.19■□□□□ 0.18
LIG1-202ENST00000427526 SMYD4Q8IYR2 804 aaPredicted RBP16.19■□□□□ 0.18
LIG1-202ENST00000427526 IGSF22Q8N9C0 903 aa16.19■□□□□ 0.18
LIG1-202ENST00000427526 CTAGE1Q96RT6 745 aa16.19■□□□□ 0.18
LIG1-202ENST00000427526 NAA15Q9BXJ9 866 aaKnown RBP16.19■□□□□ 0.18
LIG1-202ENST00000427526 ST7Q9NRC1 585 aa16.19■□□□□ 0.18
LIG1-202ENST00000427526 UBR3Q6ZT12 1888 aa16.19■□□□□ 0.18
LIG1-202ENST00000427526 BRWD3Q6RI45 1802 aa16.19■□□□□ 0.18
LIG1-202ENST00000427526 GRIK5Q16478 980 aa16.19■□□□□ 0.18
LIG1-202ENST00000427526 RSRC2Q7L4I2 434 aaKnown RBP16.19■□□□□ 0.18
LIG1-202ENST00000427526 ARGLU1Q9NWB6 273 aaPredicted RBP16.19■□□□□ 0.18
LIG1-202ENST00000427526 POLRMTO00411 1230 aaKnown RBP16.19■□□□□ 0.18
LIG1-202ENST00000427526 RAD9BQ6WBX8 426 aa16.19■□□□□ 0.18
LIG1-202ENST00000427526 ADGRG1Q9Y653 693 aa16.19■□□□□ 0.18
LIG1-202ENST00000427526 NMT2O60551 498 aa16.18■□□□□ 0.18
LIG1-202ENST00000427526 CCDC175P0C221 793 aa16.18■□□□□ 0.18
LIG1-202ENST00000427526 PLA2G4AP47712 749 aa16.18■□□□□ 0.18
LIG1-202ENST00000427526 IL17AQ16552 155 aa16.18■□□□□ 0.18
LIG1-202ENST00000427526 ZNF771Q7L3S4 317 aaPredicted RBP16.18■□□□□ 0.18
LIG1-202ENST00000427526 LRRC10BA6NIK2 292 aa16.18■□□□□ 0.18
LIG1-202ENST00000427526 TRAPPC10P48553 1259 aa16.18■□□□□ 0.18
LIG1-202ENST00000427526 PDXDC2PQ6P474 469 aa16.18■□□□□ 0.18
LIG1-202ENST00000427526 TMCO3Q6UWJ1 677 aa16.18■□□□□ 0.18
LIG1-202ENST00000427526 MTRQ99707 1265 aa16.18■□□□□ 0.18
LIG1-202ENST00000427526 FECHP22830 423 aa16.17■□□□□ 0.18
LIG1-202ENST00000427526 PPFIBP1Q86W92 1011 aa16.17■□□□□ 0.18
LIG1-202ENST00000427526 DZIP1Q86YF9 867 aaKnown RBP16.17■□□□□ 0.18
LIG1-202ENST00000427526 GPR161Q8N6U8 529 aaKnown RBP16.17■□□□□ 0.18
LIG1-202ENST00000427526 RBM17Q96I25 401 aaKnown RBP16.17■□□□□ 0.18
LIG1-202ENST00000427526 DCP1AQ9NPI6 582 aaPredicted RBP16.17■□□□□ 0.18
LIG1-202ENST00000427526 ADAMTS3O15072 1205 aa16.17■□□□□ 0.18
LIG1-202ENST00000427526 MFAP3LO75121 409 aa16.17■□□□□ 0.18
LIG1-202ENST00000427526 UFL1O94874 794 aa16.17■□□□□ 0.18
LIG1-202ENST00000427526 SCG2P13521 617 aa16.17■□□□□ 0.18
LIG1-202ENST00000427526 VEGFAP15692 232 aaPredicted RBP16.17■□□□□ 0.18
LIG1-202ENST00000427526 PPP2R3AQ06190 1150 aa16.17■□□□□ 0.18
LIG1-202ENST00000427526 KARSQ15046 597 aaKnown RBP16.17■□□□□ 0.18
LIG1-202ENST00000427526 IQUBQ8NA54 791 aa16.17■□□□□ 0.18
LIG1-202ENST00000427526 CTCFLQ8NI51 663 aaPredicted RBP16.17■□□□□ 0.18
LIG1-202ENST00000427526 STAMQ92783 540 aa16.17■□□□□ 0.18
LIG1-202ENST00000427526 ZFP91Q96JP5 570 aaPredicted RBP16.17■□□□□ 0.18
LIG1-202ENST00000427526 IRX2Q9BZI1 471 aaPredicted RBP16.17■□□□□ 0.18
LIG1-202ENST00000427526 EPC1Q9H2F5 836 aa16.17■□□□□ 0.18
LIG1-202ENST00000427526 ITIH6Q6UXX5 1313 aa16.17■□□□□ 0.18
LIG1-202ENST00000427526 CYP2D6P10635 497 aa16.16■□□□□ 0.18
LIG1-202ENST00000427526 PFKFB3Q16875 520 aaPredicted RBP16.16■□□□□ 0.18
LIG1-202ENST00000427526 SLC4A8Q2Y0W8 1093 aa16.16■□□□□ 0.18
LIG1-202ENST00000427526 FAM193AP78312 1265 aa16.16■□□□□ 0.18
LIG1-202ENST00000427526 DIXDC1Q155Q3 683 aa16.16■□□□□ 0.18
LIG1-202ENST00000427526 PIK3AP1Q6ZUJ8 805 aa16.16■□□□□ 0.18
LIG1-202ENST00000427526 RASGRP2Q7LDG7 609 aa16.16■□□□□ 0.18
LIG1-202ENST00000427526 CRNKL1Q9BZJ0 848 aaKnown RBP16.16■□□□□ 0.18
LIG1-202ENST00000427526 LIMA1Q9UHB6 759 aaKnown RBP16.16■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms