RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 E9PSI1 815 aa3.65□□□□□ -1.83
VPS13A-208ENST00000423463 GRIK1P39086 918 aa3.65□□□□□ -1.83
VPS13A-208ENST00000423463 TNNI2P48788 182 aa3.65□□□□□ -1.83
VPS13A-208ENST00000423463 ARTNQ5T4W7 220 aa3.65□□□□□ -1.83
VPS13A-208ENST00000423463 CDH24Q86UP0 819 aa3.65□□□□□ -1.83
VPS13A-208ENST00000423463 MCATQ8IVS2 390 aaKnown RBP3.65□□□□□ -1.83
VPS13A-208ENST00000423463 ANTXR1Q9H6X2 564 aa3.65□□□□□ -1.83
VPS13A-208ENST00000423463 ZFP64Q9NPA5 681 aa3.65□□□□□ -1.83
VPS13A-208ENST00000423463 EIF2AK4Q9P2K8 1649 aaKnown RBP3.65□□□□□ -1.83
VPS13A-208ENST00000423463 CROCC2H7BZ55 1655 aa3.65□□□□□ -1.83
VPS13A-208ENST00000423463 FER1L4A9Z1Z3 1794 aa3.65□□□□□ -1.83
VPS13A-208ENST00000423463 UHRF1BP1Q6BDS2 1440 aa3.65□□□□□ -1.83
VPS13A-208ENST00000423463 SETD1BQ9UPS6 1966 aaKnown RBP3.65□□□□□ -1.83
VPS13A-208ENST00000423463 FAM86C2PA6NEL3 165 aa3.64□□□□□ -1.83
VPS13A-208ENST00000423463 CHURC1-FNTBB4DL54 471 aa3.64□□□□□ -1.83
VPS13A-208ENST00000423463 POLR2BP30876 1174 aaKnown RBP3.64□□□□□ -1.83
VPS13A-208ENST00000423463 CLCQ05315 142 aa3.64□□□□□ -1.83
VPS13A-208ENST00000423463 SLC51AQ86UW1 340 aa3.64□□□□□ -1.83
VPS13A-208ENST00000423463 MRPL41Q8IXM3 137 aaKnown RBP3.64□□□□□ -1.83
VPS13A-208ENST00000423463 ACBD3Q9H3P7 528 aa3.64□□□□□ -1.83
VPS13A-208ENST00000423463 PRDM5Q9NQX1 630 aaPredicted RBP3.64□□□□□ -1.83
VPS13A-208ENST00000423463 PPT2Q9UMR5 302 aa3.64□□□□□ -1.83
VPS13A-208ENST00000423463 ARHGAP31Q2M1Z3 1444 aa3.64□□□□□ -1.83
VPS13A-208ENST00000423463 RNF17Q9BXT8 1623 aaKnown RBP3.64□□□□□ -1.83
VPS13A-208ENST00000423463 CST3P01034 146 aaPredicted RBP3.64□□□□□ -1.83
VPS13A-208ENST00000423463 SPINK2P20155 84 aa3.64□□□□□ -1.83
VPS13A-208ENST00000423463 HSPA2P54652 639 aa3.64□□□□□ -1.83
VPS13A-208ENST00000423463 RAD51AP2Q09MP3 1159 aa3.64□□□□□ -1.83
VPS13A-208ENST00000423463 PAK2Q13177 524 aa3.64□□□□□ -1.83
VPS13A-208ENST00000423463 ZNF574Q6ZN55 896 aaPredicted RBP3.64□□□□□ -1.83
VPS13A-208ENST00000423463 CCDC81Q6ZN84 652 aa3.64□□□□□ -1.83
VPS13A-208ENST00000423463 ARHGAP27Q6ZUM4 889 aa3.64□□□□□ -1.83
VPS13A-208ENST00000423463 LRRC3Q9BY71 257 aa3.64□□□□□ -1.83
VPS13A-208ENST00000423463 TNRQ92752 1358 aa3.64□□□□□ -1.83
VPS13A-208ENST00000423463 PZPP20742 1482 aa3.64□□□□□ -1.83
VPS13A-208ENST00000423463 MROH2AA6NES4 1674 aa3.64□□□□□ -1.83
VPS13A-208ENST00000423463 ABCC3O15438 1527 aa3.64□□□□□ -1.83
VPS13A-208ENST00000423463 NUP155O75694 1391 aa3.64□□□□□ -1.83
VPS13A-208ENST00000423463 KIAA1324LA8MWY0 1029 aaPredicted RBP3.64□□□□□ -1.83
VPS13A-208ENST00000423463 CEACAM5P06731 702 aa3.64□□□□□ -1.83
VPS13A-208ENST00000423463 OXCT1P55809 520 aa3.64□□□□□ -1.83
VPS13A-208ENST00000423463 DIEXFQ68CQ4 756 aaKnown RBP3.64□□□□□ -1.83
VPS13A-208ENST00000423463 OVOS1Q6IE37 1185 aa3.64□□□□□ -1.83
VPS13A-208ENST00000423463 PHACTR4Q8IZ21 702 aa3.64□□□□□ -1.83
VPS13A-208ENST00000423463 MFSD2AQ8NA29 543 aa3.64□□□□□ -1.83
VPS13A-208ENST00000423463 HFM1A2PYH4 1435 aa3.63□□□□□ -1.83
VPS13A-208ENST00000423463 NAIPQ13075 1403 aa3.63□□□□□ -1.83
VPS13A-208ENST00000423463 PRR36Q9H6K5 1346 aa3.63□□□□□ -1.83
VPS13A-208ENST00000423463 TCF3P15923 654 aa3.63□□□□□ -1.83
VPS13A-208ENST00000423463 CPSF6Q16630 551 aaKnown RBP eCLIP3.63□□□□□ -1.83
VPS13A-208ENST00000423463 ARSHQ5FYA8 562 aa3.63□□□□□ -1.83
VPS13A-208ENST00000423463 FBXW10Q5XX13 1052 aa3.63□□□□□ -1.83
VPS13A-208ENST00000423463 NFXL1Q6ZNB6 911 aa3.63□□□□□ -1.83
VPS13A-208ENST00000423463 FAM214BQ7L5A3 538 aa3.63□□□□□ -1.83
VPS13A-208ENST00000423463 DTX1Q86Y01 620 aa3.63□□□□□ -1.83
VPS13A-208ENST00000423463 THEMISQ8N1K5 641 aaPredicted RBP3.63□□□□□ -1.83
VPS13A-208ENST00000423463 NKD1Q969G9 470 aa3.63□□□□□ -1.83
VPS13A-208ENST00000423463 NT5C1AQ9BXI3 368 aa3.63□□□□□ -1.83
VPS13A-208ENST00000423463 CCDC39Q9UFE4 941 aa3.63□□□□□ -1.83
VPS13A-208ENST00000423463 ADAM30Q9UKF2 790 aa3.63□□□□□ -1.83
VPS13A-208ENST00000423463 PLAGL2Q9UPG8 496 aa3.63□□□□□ -1.83
VPS13A-208ENST00000423463 EPB41L3Q9Y2J2 1087 aaPredicted RBP3.63□□□□□ -1.83
VPS13A-208ENST00000423463 LMTK2Q8IWU2 1503 aa3.63□□□□□ -1.83
VPS13A-208ENST00000423463 C3P01024 1663 aa3.63□□□□□ -1.83
VPS13A-208ENST00000423463 CLTCQ00610 1675 aaKnown RBP3.63□□□□□ -1.83
VPS13A-208ENST00000423463 VWDEQ8N2E2 1590 aa3.63□□□□□ -1.83
VPS13A-208ENST00000423463 MROH1Q8NDA8 1641 aa3.63□□□□□ -1.83
VPS13A-208ENST00000423463 PRDM15P57071 1507 aaPredicted RBP3.63□□□□□ -1.83
VPS13A-208ENST00000423463 CBX7O95931 251 aa3.63□□□□□ -1.83
VPS13A-208ENST00000423463 CAP2P40123 477 aa3.63□□□□□ -1.83
VPS13A-208ENST00000423463 BNIP3Q12983 259 aa3.63□□□□□ -1.83
VPS13A-208ENST00000423463 NKPD1Q17RQ9 610 aa3.63□□□□□ -1.83
VPS13A-208ENST00000423463 CDKAL1Q5VV42 579 aa3.63□□□□□ -1.83
VPS13A-208ENST00000423463 SLC6A19Q695T7 634 aa3.63□□□□□ -1.83
VPS13A-208ENST00000423463 INTS5Q6P9B9 1019 aaKnown RBP3.63□□□□□ -1.83
VPS13A-208ENST00000423463 SPACA3Q8IXA5 215 aa3.63□□□□□ -1.83
VPS13A-208ENST00000423463 SLFN12Q8IYM2 578 aa3.63□□□□□ -1.83
VPS13A-208ENST00000423463 BAHD1Q8TBE0 780 aaPredicted RBP3.63□□□□□ -1.83
VPS13A-208ENST00000423463 CYB5D2Q8WUJ1 264 aa3.63□□□□□ -1.83
VPS13A-208ENST00000423463 SLC52A1Q9NWF4 448 aa3.63□□□□□ -1.83
VPS13A-208ENST00000423463 ANGEL1Q9UNK9 670 aaKnown RBP3.63□□□□□ -1.83
VPS13A-208ENST00000423463 LOC100996750A0A140TA64 210 aa3.62□□□□□ -1.83
VPS13A-208ENST00000423463 YARSP54577 528 aaKnown RBP3.62□□□□□ -1.83
VPS13A-208ENST00000423463 TMEM201Q5SNT2 666 aa3.62□□□□□ -1.83
VPS13A-208ENST00000423463 ZNF654Q8IZM8 581 aa3.62□□□□□ -1.83
VPS13A-208ENST00000423463 NETO1Q8TDF5 533 aa3.62□□□□□ -1.83
VPS13A-208ENST00000423463 PPP1R13LQ8WUF5 828 aa3.62□□□□□ -1.83
VPS13A-208ENST00000423463 KIF2CQ99661 725 aa3.62□□□□□ -1.83
VPS13A-208ENST00000423463 KRTAP4-6Q9BYQ5 205 aa3.62□□□□□ -1.83
VPS13A-208ENST00000423463 TACC3Q9Y6A5 838 aa3.62□□□□□ -1.83
VPS13A-208ENST00000423463 A2ML1A8K2U0 1454 aa3.62□□□□□ -1.83
VPS13A-208ENST00000423463 NLRP1Q9C000 1473 aa3.62□□□□□ -1.83
VPS13A-208ENST00000423463 DEPDC5O75140 1603 aa3.62□□□□□ -1.83
VPS13A-208ENST00000423463 ZC3H13Q5T200 1668 aaKnown RBP3.62□□□□□ -1.83
VPS13A-208ENST00000423463 SLC22A31A6NKX4 558 aa3.62□□□□□ -1.83
VPS13A-208ENST00000423463 GNAT3A8MTJ3 354 aa3.62□□□□□ -1.83
VPS13A-208ENST00000423463 ERCC5P28715 1186 aaPredicted RBP3.62□□□□□ -1.83
VPS13A-208ENST00000423463 IDI1Q13907 227 aa3.62□□□□□ -1.83
VPS13A-208ENST00000423463 SFRP5Q5T4F7 317 aa3.62□□□□□ -1.83
VPS13A-208ENST00000423463 SPRED2Q7Z698 418 aa3.62□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms