RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 ZNF277Q9NRM2 450 aaPredicted RBP9.56□□□□□ -0.88
USP54-203ENST00000418501 WTIPA6NIX2 430 aaPredicted RBP9.56□□□□□ -0.88
USP54-203ENST00000418501 WDHD1O75717 1129 aaPredicted RBP9.56□□□□□ -0.88
USP54-203ENST00000418501 FAM173BQ6P4H8 233 aa9.56□□□□□ -0.88
USP54-203ENST00000418501 IQUBQ8NA54 791 aa9.56□□□□□ -0.88
USP54-203ENST00000418501 MTMR14Q8NCE2 650 aa9.56□□□□□ -0.88
USP54-203ENST00000418501 CALML4Q96GE6 196 aa9.56□□□□□ -0.88
USP54-203ENST00000418501 CNTNAP5Q8WYK1 1306 aa9.55□□□□□ -0.88
USP54-203ENST00000418501 LTBP3Q9NS15 1303 aa9.55□□□□□ -0.88
USP54-203ENST00000418501 GCFC2P16383 781 aaKnown RBP9.55□□□□□ -0.88
USP54-203ENST00000418501 LONP1P36776 959 aaKnown RBP9.55□□□□□ -0.88
USP54-203ENST00000418501 UBA7P41226 1012 aa9.55□□□□□ -0.88
USP54-203ENST00000418501 CAMK4Q16566 473 aa9.55□□□□□ -0.88
USP54-203ENST00000418501 TPD52L1Q16890 204 aaPredicted RBP9.55□□□□□ -0.88
USP54-203ENST00000418501 APOBEC3FQ8IUX4 373 aaKnown RBP9.55□□□□□ -0.88
USP54-203ENST00000418501 ZNF384Q8TF68 577 aa9.55□□□□□ -0.88
USP54-203ENST00000418501 C7orf43Q8WVR3 580 aa9.55□□□□□ -0.88
USP54-203ENST00000418501 SMARCE1Q969G3 411 aa9.55□□□□□ -0.88
USP54-203ENST00000418501 BMP2KQ9NSY1 1161 aaPredicted RBP9.55□□□□□ -0.88
USP54-203ENST00000418501 BARHL2Q9NY43 387 aa9.55□□□□□ -0.88
USP54-203ENST00000418501 KCNH3Q9ULD8 1083 aa9.55□□□□□ -0.88
USP54-203ENST00000418501 LAMA4Q16363 1823 aa9.55□□□□□ -0.88
USP54-203ENST00000418501 PALM3A6NDB9 673 aaPredicted RBP9.55□□□□□ -0.88
USP54-203ENST00000418501 SMCO2A6NFE2 343 aa9.55□□□□□ -0.88
USP54-203ENST00000418501 PIBF1Q8WXW3 757 aa9.55□□□□□ -0.88
USP54-203ENST00000418501 AK8Q96MA6 479 aa9.55□□□□□ -0.88
USP54-203ENST00000418501 ZNF70Q9UC06 446 aaPredicted RBP9.55□□□□□ -0.88
USP54-203ENST00000418501 SRPRBQ9Y5M8 271 aaKnown RBP9.55□□□□□ -0.88
USP54-203ENST00000418501 COL2A1P02458 1487 aaPredicted RBP9.55□□□□□ -0.88
USP54-203ENST00000418501 SPDYE2BA6NHP3 402 aa9.55□□□□□ -0.88
USP54-203ENST00000418501 PSMD14O00487 310 aa9.55□□□□□ -0.88
USP54-203ENST00000418501 PPFIA3O75145 1194 aa9.55□□□□□ -0.88
USP54-203ENST00000418501 PLEKHA8P1O95397 391 aa9.55□□□□□ -0.88
USP54-203ENST00000418501 ASNSP08243 561 aa9.55□□□□□ -0.88
USP54-203ENST00000418501 SPDYE6P0CI01 402 aa9.55□□□□□ -0.88
USP54-203ENST00000418501 NF2P35240 595 aa9.55□□□□□ -0.88
USP54-203ENST00000418501 TRIML1Q8N9V2 468 aa9.55□□□□□ -0.88
USP54-203ENST00000418501 DPF2Q92785 391 aa9.55□□□□□ -0.88
USP54-203ENST00000418501 RABGAP1Q9Y3P9 1069 aa9.55□□□□□ -0.88
USP54-203ENST00000418501 FDX1P10109 184 aa9.54□□□□□ -0.88
USP54-203ENST00000418501 XRCC6P12956 609 aaKnown RBP eCLIP9.54□□□□□ -0.88
USP54-203ENST00000418501 MARCKSP29966 332 aaPredicted RBP9.54□□□□□ -0.88
USP54-203ENST00000418501 ZNF165P49910 485 aa9.54□□□□□ -0.88
USP54-203ENST00000418501 USP14P54578 494 aa9.54□□□□□ -0.88
USP54-203ENST00000418501 PIK3AP1Q6ZUJ8 805 aa9.54□□□□□ -0.88
USP54-203ENST00000418501 CERS5Q8N5B7 392 aa9.54□□□□□ -0.88
USP54-203ENST00000418501 RNF214Q8ND24 703 aa9.54□□□□□ -0.88
USP54-203ENST00000418501 TDRD3Q9H7E2 651 aaKnown RBP9.54□□□□□ -0.88
USP54-203ENST00000418501 GPCPD1Q9NPB8 672 aa9.54□□□□□ -0.88
USP54-203ENST00000418501 ZNF202O95125 648 aa9.54□□□□□ -0.88
USP54-203ENST00000418501 NBPF11Q86T75 865 aa9.54□□□□□ -0.88
USP54-203ENST00000418501 ERMNQ8TAM6 284 aa9.54□□□□□ -0.88
USP54-203ENST00000418501 CUEDC2Q9H467 287 aa9.54□□□□□ -0.88
USP54-203ENST00000418501 FAM217BQ9NTX9 383 aaPredicted RBP9.54□□□□□ -0.88
USP54-203ENST00000418501 CLIC4Q9Y696 253 aa9.54□□□□□ -0.88
USP54-203ENST00000418501 NRXN2Q9P2S2 1712 aa9.54□□□□□ -0.88
USP54-203ENST00000418501 TCP10L2B9ZVM9 353 aa9.54□□□□□ -0.88
USP54-203ENST00000418501 SLC26A4O43511 780 aa9.54□□□□□ -0.88
USP54-203ENST00000418501 MYL1P05976 194 aa9.54□□□□□ -0.88
USP54-203ENST00000418501 SRBD1Q8N5C6 995 aaKnown RBP9.54□□□□□ -0.88
USP54-203ENST00000418501 AMNQ9BXJ7 453 aa9.54□□□□□ -0.88
USP54-203ENST00000418501 GJA3Q9Y6H8 435 aa9.54□□□□□ -0.88
USP54-203ENST00000418501 R3HDM1Q15032 1099 aaKnown RBP9.54□□□□□ -0.88
USP54-203ENST00000418501 SUPT20HL1Q3ZLR7 823 aa9.54□□□□□ -0.88
USP54-203ENST00000418501 NEK8Q86SG6 692 aa9.54□□□□□ -0.88
USP54-203ENST00000418501 SLC44A5Q8NCS7 719 aa9.54□□□□□ -0.88
USP54-203ENST00000418501 PICK1Q9NRD5 415 aa9.54□□□□□ -0.88
USP54-203ENST00000418501 PPP2R3BQ9Y5P8 575 aa9.54□□□□□ -0.88
USP54-203ENST00000418501 DCAF8L1A6NGE4 600 aa9.53□□□□□ -0.88
USP54-203ENST00000418501 SPDYE3A6NKU9 549 aa9.53□□□□□ -0.88
USP54-203ENST00000418501 KIF20AO95235 890 aa9.53□□□□□ -0.88
USP54-203ENST00000418501 BMP3P12645 472 aa9.53□□□□□ -0.88
USP54-203ENST00000418501 AKR1B1P15121 316 aa9.53□□□□□ -0.88
USP54-203ENST00000418501 PTPREP23469 700 aa9.53□□□□□ -0.88
USP54-203ENST00000418501 SPDYE2Q495Y8 402 aa9.53□□□□□ -0.88
USP54-203ENST00000418501 CKAP2LQ8IYA6 745 aa9.53□□□□□ -0.88
USP54-203ENST00000418501 TBC1D12O60347 775 aa9.53□□□□□ -0.88
USP54-203ENST00000418501 TPM1P09493 284 aa9.53□□□□□ -0.88
USP54-203ENST00000418501 ZNF76P36508 570 aa9.53□□□□□ -0.88
USP54-203ENST00000418501 GABPAQ06546 454 aa9.53□□□□□ -0.88
USP54-203ENST00000418501 ZNF543Q08ER8 600 aa9.53□□□□□ -0.88
USP54-203ENST00000418501 AP3B2Q13367 1082 aa9.53□□□□□ -0.88
USP54-203ENST00000418501 GMCL1P1Q8NEA9 526 aa9.53□□□□□ -0.88
USP54-203ENST00000418501 TRIM5Q9C035 493 aa9.53□□□□□ -0.88
USP54-203ENST00000418501 SENP2Q9HC62 589 aa9.53□□□□□ -0.88
USP54-203ENST00000418501 TNS1Q9HBL0 1735 aaKnown RBP9.53□□□□□ -0.88
USP54-203ENST00000418501 CACNA1SQ13698 1873 aa9.53□□□□□ -0.88
USP54-203ENST00000418501 LRRC37AA6NMS7 1700 aa9.53□□□□□ -0.88
USP54-203ENST00000418501 ZBTB5O15062 677 aa9.53□□□□□ -0.88
USP54-203ENST00000418501 PFKFB1P16118 471 aa9.53□□□□□ -0.88
USP54-203ENST00000418501 LRRC47Q8N1G4 583 aaKnown RBP9.53□□□□□ -0.88
USP54-203ENST00000418501 FAM43AQ8N2R8 423 aa9.53□□□□□ -0.88
USP54-203ENST00000418501 MKL1Q969V6 931 aa9.53□□□□□ -0.88
USP54-203ENST00000418501 MAD2L2Q9UI95 211 aa9.53□□□□□ -0.88
USP54-203ENST00000418501 MRPL11Q9Y3B7 192 aaKnown RBP9.53□□□□□ -0.88
USP54-203ENST00000418501 NMT2O60551 498 aa9.52□□□□□ -0.88
USP54-203ENST00000418501 LIG1P18858 919 aa9.52□□□□□ -0.88
USP54-203ENST00000418501 CDK11BP21127 795 aaKnown RBP9.52□□□□□ -0.88
USP54-203ENST00000418501 FILIP1LQ4L180 1135 aa9.52□□□□□ -0.88
USP54-203ENST00000418501 RESP18Q5W5W9 173 aa9.52□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 102.2 ms