RNA–Protein interactions for RNA: ENST00000416649.6

NCKIPSD-204, Transcript of NCK interacting protein with SH3 domain, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene NCKIPSD, Length 2,925 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCKIPSD-204ENST00000416649 NDUFA10O95299 355 aa16.49■□□□□ 0.23
NCKIPSD-204ENST00000416649 IARSP41252 1262 aaKnown RBP16.49■□□□□ 0.23
NCKIPSD-204ENST00000416649 PPARAQ07869 468 aa16.49■□□□□ 0.23
NCKIPSD-204ENST00000416649 IFT88Q13099 833 aa16.49■□□□□ 0.23
NCKIPSD-204ENST00000416649 E2F5Q15329 346 aa16.49■□□□□ 0.23
NCKIPSD-204ENST00000416649 PSMB7Q99436 277 aa16.49■□□□□ 0.23
NCKIPSD-204ENST00000416649 FAM184BQ9ULE4 1060 aa16.49■□□□□ 0.23
NCKIPSD-204ENST00000416649 KCNJ14Q9UNX9 436 aa16.49■□□□□ 0.23
NCKIPSD-204ENST00000416649 MACROD2A1Z1Q3 448 aa16.49■□□□□ 0.23
NCKIPSD-204ENST00000416649 ERCC5P28715 1186 aaPredicted RBP16.49■□□□□ 0.23
NCKIPSD-204ENST00000416649 GUCY1A3Q02108 690 aa16.49■□□□□ 0.23
NCKIPSD-204ENST00000416649 CKAP4Q07065 602 aaKnown RBP16.49■□□□□ 0.23
NCKIPSD-204ENST00000416649 IQCA1Q86XH1 822 aa16.49■□□□□ 0.23
NCKIPSD-204ENST00000416649 MARCH10Q8NA82 808 aaPredicted RBP16.49■□□□□ 0.23
NCKIPSD-204ENST00000416649 SLC26A6Q9BXS9 759 aa16.49■□□□□ 0.23
NCKIPSD-204ENST00000416649 MRC1P22897 1456 aa16.48■□□□□ 0.23
NCKIPSD-204ENST00000416649 NHSL1Q5SYE7 1610 aa16.48■□□□□ 0.23
NCKIPSD-204ENST00000416649 FAM237AA0A1B0GTK4 181 aa16.48■□□□□ 0.23
NCKIPSD-204ENST00000416649 GOLGA8KD6RF30 607 aa16.48■□□□□ 0.23
NCKIPSD-204ENST00000416649 OPA1O60313 960 aa16.48■□□□□ 0.23
NCKIPSD-204ENST00000416649 FOXO4P98177 505 aa16.48■□□□□ 0.23
NCKIPSD-204ENST00000416649 SF3B2Q13435 895 aaKnown RBP16.48■□□□□ 0.23
NCKIPSD-204ENST00000416649 CCDC51Q96ER9 411 aa16.48■□□□□ 0.23
NCKIPSD-204ENST00000416649 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.48■□□□□ 0.23
NCKIPSD-204ENST00000416649 ATP2C2O75185 946 aa16.48■□□□□ 0.23
NCKIPSD-204ENST00000416649 IDEP14735 1019 aa16.48■□□□□ 0.23
NCKIPSD-204ENST00000416649 PBX1P40424 430 aa16.48■□□□□ 0.23
NCKIPSD-204ENST00000416649 SARSP49591 514 aaKnown RBP16.48■□□□□ 0.23
NCKIPSD-204ENST00000416649 SEC24CP53992 1094 aa16.48■□□□□ 0.23
NCKIPSD-204ENST00000416649 CCDC40Q4G0X9 1142 aa16.48■□□□□ 0.23
NCKIPSD-204ENST00000416649 DMGDHQ9UI17 866 aaKnown RBP16.48■□□□□ 0.23
NCKIPSD-204ENST00000416649 REXO2Q9Y3B8 237 aaKnown RBP16.48■□□□□ 0.23
NCKIPSD-204ENST00000416649 TARSL2A2RTX5 802 aaKnown RBP16.47■□□□□ 0.23
NCKIPSD-204ENST00000416649 ZNF213O14771 459 aa16.47■□□□□ 0.23
NCKIPSD-204ENST00000416649 KRT14P02533 472 aa16.47■□□□□ 0.23
NCKIPSD-204ENST00000416649 RFX5P48382 616 aaPredicted RBP16.47■□□□□ 0.23
NCKIPSD-204ENST00000416649 KRT31Q15323 416 aa16.47■□□□□ 0.23
NCKIPSD-204ENST00000416649 TTMPQ5BVD1 217 aa16.47■□□□□ 0.23
NCKIPSD-204ENST00000416649 MB21D2Q8IYB1 491 aaPredicted RBP16.47■□□□□ 0.23
NCKIPSD-204ENST00000416649 SENP2Q9HC62 589 aa16.47■□□□□ 0.23
NCKIPSD-204ENST00000416649 MCM8Q9UJA3 840 aa16.47■□□□□ 0.23
NCKIPSD-204ENST00000416649 PARP4Q9UKK3 1724 aaKnown RBP16.47■□□□□ 0.23
NCKIPSD-204ENST00000416649 HSF2BPO75031 334 aa16.47■□□□□ 0.23
NCKIPSD-204ENST00000416649 CLNS1AP54105 237 aaKnown RBP16.47■□□□□ 0.23
NCKIPSD-204ENST00000416649 CASP7P55210 303 aa16.47■□□□□ 0.23
NCKIPSD-204ENST00000416649 NAIF1Q69YI7 327 aaPredicted RBP16.47■□□□□ 0.23
NCKIPSD-204ENST00000416649 MAPK8IP1Q9UQF2 711 aa16.47■□□□□ 0.23
NCKIPSD-204ENST00000416649 CDKL5O76039 1030 aa16.46■□□□□ 0.23
NCKIPSD-204ENST00000416649 FSBPO95073 299 aa16.46■□□□□ 0.23
NCKIPSD-204ENST00000416649 RPSAP08865 295 aaKnown RBP16.46■□□□□ 0.23
NCKIPSD-204ENST00000416649 APBA1Q02410 837 aa16.46■□□□□ 0.23
NCKIPSD-204ENST00000416649 TSR1Q2NL82 804 aaKnown RBP16.46■□□□□ 0.23
NCKIPSD-204ENST00000416649 MICALCLQ6ZW33 695 aa16.46■□□□□ 0.23
NCKIPSD-204ENST00000416649 CMTR1Q8N1G2 835 aaKnown RBP16.46■□□□□ 0.23
NCKIPSD-204ENST00000416649 TRIML1Q8N9V2 468 aa16.46■□□□□ 0.23
NCKIPSD-204ENST00000416649 CCDC114Q96M63 670 aa16.46■□□□□ 0.23
NCKIPSD-204ENST00000416649 SH3GL2Q99962 352 aa16.46■□□□□ 0.23
NCKIPSD-204ENST00000416649 LRRC1Q9BTT6 524 aa16.46■□□□□ 0.23
NCKIPSD-204ENST00000416649 PCDHB6Q9Y5E3 794 aa16.46■□□□□ 0.23
NCKIPSD-204ENST00000416649 KCPQ6ZWJ8 1503 aa16.46■□□□□ 0.23
NCKIPSD-204ENST00000416649 H7C1W4 665 aa16.46■□□□□ 0.23
NCKIPSD-204ENST00000416649 PDHBP11177 359 aa16.46■□□□□ 0.23
NCKIPSD-204ENST00000416649 UBXN1Q04323 297 aa16.46■□□□□ 0.23
NCKIPSD-204ENST00000416649 DDR1Q08345 913 aa16.46■□□□□ 0.23
NCKIPSD-204ENST00000416649 AMOTL1Q8IY63 956 aa16.46■□□□□ 0.23
NCKIPSD-204ENST00000416649 TSEN2Q8NCE0 465 aaKnown RBP16.46■□□□□ 0.23
NCKIPSD-204ENST00000416649 HAUS4Q9H6D7 363 aa16.46■□□□□ 0.23
NCKIPSD-204ENST00000416649 SPATA31A1Q5TZJ5 1347 aa16.46■□□□□ 0.23
NCKIPSD-204ENST00000416649 TCIRG1Q13488 830 aa16.46■□□□□ 0.22
NCKIPSD-204ENST00000416649 SAFBQ15424 915 aaKnown RBP eCLIP16.46■□□□□ 0.22
NCKIPSD-204ENST00000416649 NAA35Q5VZE5 725 aa16.46■□□□□ 0.22
NCKIPSD-204ENST00000416649 CCDC13Q8IYE1 715 aa16.46■□□□□ 0.22
NCKIPSD-204ENST00000416649 STAG1Q8WVM7 1258 aa16.46■□□□□ 0.22
NCKIPSD-204ENST00000416649 CSRNP2Q9H175 543 aa16.46■□□□□ 0.22
NCKIPSD-204ENST00000416649 RFX7Q2KHR2 1363 aa16.45■□□□□ 0.22
NCKIPSD-204ENST00000416649 PSMD14O00487 310 aa16.45■□□□□ 0.22
NCKIPSD-204ENST00000416649 SKAP2O75563 359 aaPredicted RBP16.45■□□□□ 0.22
NCKIPSD-204ENST00000416649 CYP19A1P11511 503 aaPredicted RBP16.45■□□□□ 0.22
NCKIPSD-204ENST00000416649 NNTQ13423 1086 aa16.45■□□□□ 0.22
NCKIPSD-204ENST00000416649 NT5DC1Q5TFE4 455 aa16.45■□□□□ 0.22
NCKIPSD-204ENST00000416649 NOSTRINQ8IVI9 506 aa16.45■□□□□ 0.22
NCKIPSD-204ENST00000416649 DIS3L2Q8IYB7 885 aaKnown RBP16.45■□□□□ 0.22
NCKIPSD-204ENST00000416649 SMARCAL1Q9NZC9 954 aa16.45■□□□□ 0.22
NCKIPSD-204ENST00000416649 FBXO2Q9UK22 296 aaPredicted RBP16.45■□□□□ 0.22
NCKIPSD-204ENST00000416649 DUSP10Q9Y6W6 482 aa16.45■□□□□ 0.22
NCKIPSD-204ENST00000416649 ACTN4O43707 911 aaKnown RBP16.45■□□□□ 0.22
NCKIPSD-204ENST00000416649 NAA25Q14CX7 972 aa16.45■□□□□ 0.22
NCKIPSD-204ENST00000416649 PREPLQ4J6C6 727 aaPredicted RBP16.45■□□□□ 0.22
NCKIPSD-204ENST00000416649 AENQ8WTP8 325 aaKnown RBP16.45■□□□□ 0.22
NCKIPSD-204ENST00000416649 EPSTI1Q96J88 318 aa16.45■□□□□ 0.22
NCKIPSD-204ENST00000416649 A1CFQ9NQ94 594 aaKnown RBP16.45■□□□□ 0.22
NCKIPSD-204ENST00000416649 GOLGA8AA7E2F4 631 aa16.44■□□□□ 0.22
NCKIPSD-204ENST00000416649 C21orf2O43822 256 aa16.44■□□□□ 0.22
NCKIPSD-204ENST00000416649 PTPREP23469 700 aa16.44■□□□□ 0.22
NCKIPSD-204ENST00000416649 LSP1P33241 339 aa16.44■□□□□ 0.22
NCKIPSD-204ENST00000416649 NR5A1Q13285 461 aa16.44■□□□□ 0.22
NCKIPSD-204ENST00000416649 DZIP3Q86Y13 1208 aaKnown RBP16.44■□□□□ 0.22
NCKIPSD-204ENST00000416649 RNPC3Q96LT9 517 aaKnown RBP16.44■□□□□ 0.22
NCKIPSD-204ENST00000416649 SLC40A1Q9NP59 571 aa16.44■□□□□ 0.22
NCKIPSD-204ENST00000416649 TRMT112Q9UI30 125 aaKnown RBP16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms