RNA–Protein interactions for RNA: ENST00000415148.6

CD44-206, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-206ENST00000415148 CTAGE9A4FU28 777 aa11.06□□□□□ -0.64
CD44-206ENST00000415148 GTPBP6O43824 516 aaPredicted RBP11.06□□□□□ -0.64
CD44-206ENST00000415148 GYPCP04921 128 aa11.06□□□□□ -0.64
CD44-206ENST00000415148 RHOXF2BP0C7M4 288 aa11.06□□□□□ -0.64
CD44-206ENST00000415148 CASP14P31944 242 aa11.06□□□□□ -0.64
CD44-206ENST00000415148 NT5C2P49902 561 aa11.06□□□□□ -0.64
CD44-206ENST00000415148 FXR1P51114 621 aaKnown RBP eCLIP11.06□□□□□ -0.64
CD44-206ENST00000415148 PTGDRQ13258 359 aa11.06□□□□□ -0.64
CD44-206ENST00000415148 UBE4AQ14139 1066 aa11.06□□□□□ -0.64
CD44-206ENST00000415148 NPY5RQ15761 445 aa11.06□□□□□ -0.64
CD44-206ENST00000415148 ZNF569Q5MCW4 686 aa11.06□□□□□ -0.64
CD44-206ENST00000415148 ARL6IP4Q66PJ3 421 aaKnown RBP11.06□□□□□ -0.64
CD44-206ENST00000415148 INTS5Q6P9B9 1019 aaKnown RBP11.06□□□□□ -0.64
CD44-206ENST00000415148 ADGRA1Q86SQ6 560 aa11.06□□□□□ -0.64
CD44-206ENST00000415148 SDR42E1Q8WUS8 393 aa11.06□□□□□ -0.64
CD44-206ENST00000415148 RHOXF2Q9BQY4 288 aa11.06□□□□□ -0.64
CD44-206ENST00000415148 BTG4Q9NY30 223 aa11.06□□□□□ -0.64
CD44-206ENST00000415148 RREB1Q92766 1687 aa11.06□□□□□ -0.64
CD44-206ENST00000415148 ORC4O43929 436 aa11.06□□□□□ -0.64
CD44-206ENST00000415148 NTSR2O95665 410 aa11.06□□□□□ -0.64
CD44-206ENST00000415148 ZNF174Q15697 407 aa11.06□□□□□ -0.64
CD44-206ENST00000415148 ZNF658Q5TYW1 1059 aaPredicted RBP11.06□□□□□ -0.64
CD44-206ENST00000415148 PDXDC2PQ6P474 469 aa11.06□□□□□ -0.64
CD44-206ENST00000415148 CYP26C1Q6V0L0 522 aa11.06□□□□□ -0.64
CD44-206ENST00000415148 SLC35F6Q8N357 371 aa11.06□□□□□ -0.64
CD44-206ENST00000415148 PSD3Q9NYI0 1048 aa11.06□□□□□ -0.64
CD44-206ENST00000415148 VPS18Q9P253 973 aa11.06□□□□□ -0.64
CD44-206ENST00000415148 TFR2Q9UP52 801 aa11.06□□□□□ -0.64
CD44-206ENST00000415148 COL14A1Q05707 1796 aaKnown RBP11.06□□□□□ -0.64
CD44-206ENST00000415148 MYH2Q9UKX2 1941 aa11.05□□□□□ -0.64
CD44-206ENST00000415148 ERLIN1O75477 346 aa11.05□□□□□ -0.64
CD44-206ENST00000415148 CAMTA2O94983 1202 aa11.05□□□□□ -0.64
CD44-206ENST00000415148 VSNL1P62760 191 aa11.05□□□□□ -0.64
CD44-206ENST00000415148 ERVK-24P63145 666 aa11.05□□□□□ -0.64
CD44-206ENST00000415148 PIP4K2BP78356 416 aa11.05□□□□□ -0.64
CD44-206ENST00000415148 WHAMMP3Q1A5X7 153 aa11.05□□□□□ -0.64
CD44-206ENST00000415148 MUM1L1Q5H9M0 696 aa11.05□□□□□ -0.64
CD44-206ENST00000415148 NOA1Q8NC60 698 aaKnown RBP11.05□□□□□ -0.64
CD44-206ENST00000415148 TRIM10Q9UDY6 481 aa11.05□□□□□ -0.64
CD44-206ENST00000415148 CACNA1SQ13698 1873 aa11.05□□□□□ -0.64
CD44-206ENST00000415148 XDHP47989 1333 aa11.05□□□□□ -0.64
CD44-206ENST00000415148 H7C1D1 291 aa11.05□□□□□ -0.64
CD44-206ENST00000415148 N4BP3O15049 544 aa11.05□□□□□ -0.64
CD44-206ENST00000415148 PLEKHA8P1O95397 391 aa11.05□□□□□ -0.64
CD44-206ENST00000415148 LONP1P36776 959 aaKnown RBP11.05□□□□□ -0.64
CD44-206ENST00000415148 PAK1Q13153 545 aa11.05□□□□□ -0.64
CD44-206ENST00000415148 KRT31Q15323 416 aa11.05□□□□□ -0.64
CD44-206ENST00000415148 TCP11X2Q5H9J9 407 aa11.05□□□□□ -0.64
CD44-206ENST00000415148 RRAGBQ5VZM2 374 aa11.05□□□□□ -0.64
CD44-206ENST00000415148 C10orf67Q8IYJ2 551 aa11.05□□□□□ -0.64
CD44-206ENST00000415148 CTCFLQ8NI51 663 aaPredicted RBP11.05□□□□□ -0.64
CD44-206ENST00000415148 ABHD10Q9NUJ1 306 aa11.05□□□□□ -0.64
CD44-206ENST00000415148 ABCF2Q9UG63 623 aa11.05□□□□□ -0.64
CD44-206ENST00000415148 CTNND2Q9UQB3 1225 aa11.05□□□□□ -0.64
CD44-206ENST00000415148 FAN1Q9Y2M0 1017 aa11.05□□□□□ -0.64
CD44-206ENST00000415148 CNTNAP5Q8WYK1 1306 aa11.04□□□□□ -0.64
CD44-206ENST00000415148 CICQ96RK0 1608 aaPredicted RBP11.04□□□□□ -0.64
CD44-206ENST00000415148 PHACTR2O75167 634 aa11.04□□□□□ -0.64
CD44-206ENST00000415148 PRDM1O75626 825 aa11.04□□□□□ -0.64
CD44-206ENST00000415148 MYL1P05976 194 aa11.04□□□□□ -0.64
CD44-206ENST00000415148 SCG2P13521 617 aa11.04□□□□□ -0.64
CD44-206ENST00000415148 CALML3P27482 149 aa11.04□□□□□ -0.64
CD44-206ENST00000415148 CCT6AP40227 531 aaKnown RBP11.04□□□□□ -0.64
CD44-206ENST00000415148 COPB1P53618 953 aaKnown RBP11.04□□□□□ -0.64
CD44-206ENST00000415148 KIF4BQ2VIQ3 1234 aa11.04□□□□□ -0.64
CD44-206ENST00000415148 CAVIN4Q5BKX8 364 aa11.04□□□□□ -0.64
CD44-206ENST00000415148 CTR9Q6PD62 1173 aa11.04□□□□□ -0.64
CD44-206ENST00000415148 HDXQ7Z353 690 aa11.04□□□□□ -0.64
CD44-206ENST00000415148 SH3GLB2Q9NR46 395 aa11.04□□□□□ -0.64
CD44-206ENST00000415148 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.04□□□□□ -0.64
CD44-206ENST00000415148 PDS5AQ29RF7 1337 aaKnown RBP11.04□□□□□ -0.64
CD44-206ENST00000415148 ANKRD65E5RJM6 399 aa11.04□□□□□ -0.64
CD44-206ENST00000415148 ADAMTS3O15072 1205 aa11.04□□□□□ -0.64
CD44-206ENST00000415148 NLRP5P59047 1200 aa11.04□□□□□ -0.64
CD44-206ENST00000415148 PFKFB3Q16875 520 aaPredicted RBP11.04□□□□□ -0.64
CD44-206ENST00000415148 NCAPH2Q6IBW4 605 aa11.04□□□□□ -0.64
CD44-206ENST00000415148 PLCD3Q8N3E9 789 aa11.04□□□□□ -0.64
CD44-206ENST00000415148 SRBD1Q8N5C6 995 aaKnown RBP11.04□□□□□ -0.64
CD44-206ENST00000415148 EXOC4Q96A65 974 aa11.04□□□□□ -0.64
CD44-206ENST00000415148 NAPGQ99747 312 aaPredicted RBP11.04□□□□□ -0.64
CD44-206ENST00000415148 GBP3Q9H0R5 595 aa11.04□□□□□ -0.64
CD44-206ENST00000415148 PLEKHA4Q9H4M7 779 aa11.04□□□□□ -0.64
CD44-206ENST00000415148 L1RE1Q9UN81 338 aa11.04□□□□□ -0.64
CD44-206ENST00000415148 ZNF335Q9H4Z2 1342 aaPredicted RBP11.03□□□□□ -0.64
CD44-206ENST00000415148 MYO1CO00159 1063 aa11.03□□□□□ -0.64
CD44-206ENST00000415148 ARHGAP25P42331 645 aa11.03□□□□□ -0.64
CD44-206ENST00000415148 CRKLP46109 303 aaKnown RBP11.03□□□□□ -0.64
CD44-206ENST00000415148 ZNF662Q6ZS27 426 aa11.03□□□□□ -0.64
CD44-206ENST00000415148 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.03□□□□□ -0.64
CD44-206ENST00000415148 ATP8A2Q9NTI2 1148 aa11.03□□□□□ -0.64
CD44-206ENST00000415148 BSDC1Q9NW68 430 aaPredicted RBP11.03□□□□□ -0.64
CD44-206ENST00000415148 RNF216Q9NWF9 866 aaPredicted RBP11.03□□□□□ -0.64
CD44-206ENST00000415148 NIP7Q9Y221 180 aaKnown RBP eCLIP11.03□□□□□ -0.64
CD44-206ENST00000415148 BAZ2BQ9UIF8 2168 aaKnown RBP11.03□□□□□ -0.64
CD44-206ENST00000415148 LRRIQ3A6PVS8 624 aaPredicted RBP11.03□□□□□ -0.64
CD44-206ENST00000415148 KCNJ18B7U540 433 aa11.03□□□□□ -0.64
CD44-206ENST00000415148 RPN1P04843 607 aaKnown RBP11.03□□□□□ -0.64
CD44-206ENST00000415148 KIF5BP33176 963 aa11.03□□□□□ -0.64
CD44-206ENST00000415148 KCNJ12Q14500 433 aa11.03□□□□□ -0.64
CD44-206ENST00000415148 SF3B3Q15393 1217 aaKnown RBP11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms