RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 SRBD1Q8N5C6 995 aaKnown RBP16.57■□□□□ 0.24
SF3B1-204ENST00000414963 CLMNQ96JQ2 1002 aa16.57■□□□□ 0.24
SF3B1-204ENST00000414963 C12orf42Q96LP6 360 aa16.57■□□□□ 0.24
SF3B1-204ENST00000414963 SPZ1Q9BXG8 430 aa16.57■□□□□ 0.24
SF3B1-204ENST00000414963 ZNF408Q9H9D4 720 aa16.57■□□□□ 0.24
SF3B1-204ENST00000414963 PTPDC1A2A3K4 754 aa16.56■□□□□ 0.24
SF3B1-204ENST00000414963 CXCL11O14625 94 aa16.56■□□□□ 0.24
SF3B1-204ENST00000414963 JAK2O60674 1132 aa16.56■□□□□ 0.24
SF3B1-204ENST00000414963 PLA2G6O60733 806 aa16.56■□□□□ 0.24
SF3B1-204ENST00000414963 PLEKHA8P1O95397 391 aa16.56■□□□□ 0.24
SF3B1-204ENST00000414963 FMNL1O95466 1100 aaPredicted RBP16.56■□□□□ 0.24
SF3B1-204ENST00000414963 FDPSP14324 419 aaKnown RBP16.56■□□□□ 0.24
SF3B1-204ENST00000414963 PPIL2Q13356 520 aa16.56■□□□□ 0.24
SF3B1-204ENST00000414963 BTNL9Q6UXG8 535 aa16.56■□□□□ 0.24
SF3B1-204ENST00000414963 ZNF784Q8NCA9 323 aaPredicted RBP16.56■□□□□ 0.24
SF3B1-204ENST00000414963 SPRYD3Q8NCJ5 442 aa16.56■□□□□ 0.24
SF3B1-204ENST00000414963 FEZ1Q99689 392 aa16.56■□□□□ 0.24
SF3B1-204ENST00000414963 RNF26Q9BY78 433 aaPredicted RBP16.56■□□□□ 0.24
SF3B1-204ENST00000414963 ELP3Q9H9T3 547 aa16.56■□□□□ 0.24
SF3B1-204ENST00000414963 EMILIN3Q9NT22 766 aa16.56■□□□□ 0.24
SF3B1-204ENST00000414963 FOXD4L1Q9NU39 408 aa16.56■□□□□ 0.24
SF3B1-204ENST00000414963 MYH4Q9Y623 1939 aa16.55■□□□□ 0.24
SF3B1-204ENST00000414963 PRPF3O43395 683 aaKnown RBP16.55■□□□□ 0.24
SF3B1-204ENST00000414963 BMP3P12645 472 aa16.55■□□□□ 0.24
SF3B1-204ENST00000414963 PDIA4P13667 645 aaKnown RBP16.55■□□□□ 0.24
SF3B1-204ENST00000414963 GJB2P29033 226 aa16.55■□□□□ 0.24
SF3B1-204ENST00000414963 SSRP1Q08945 709 aaKnown RBP16.55■□□□□ 0.24
SF3B1-204ENST00000414963 FSTL1Q12841 308 aa16.55■□□□□ 0.24
SF3B1-204ENST00000414963 MTMR2Q13614 643 aa16.55■□□□□ 0.24
SF3B1-204ENST00000414963 SLC35G1Q2M3R5 365 aa16.55■□□□□ 0.24
SF3B1-204ENST00000414963 RASGRP2Q7LDG7 609 aa16.55■□□□□ 0.24
SF3B1-204ENST00000414963 RGS22Q8NE09 1264 aa16.55■□□□□ 0.24
SF3B1-204ENST00000414963 SLC10A4Q96EP9 437 aa16.55■□□□□ 0.24
SF3B1-204ENST00000414963 RIOX1Q9H6W3 641 aa16.55■□□□□ 0.24
SF3B1-204ENST00000414963 RBM27Q9P2N5 1060 aaKnown RBP16.55■□□□□ 0.24
SF3B1-204ENST00000414963 KCNH4Q9UQ05 1017 aa16.55■□□□□ 0.24
SF3B1-204ENST00000414963 MTMR7Q9Y216 660 aa16.55■□□□□ 0.24
SF3B1-204ENST00000414963 KIF3AQ9Y496 699 aa16.55■□□□□ 0.24
SF3B1-204ENST00000414963 WDR46O15213 610 aaKnown RBP16.54■□□□□ 0.24
SF3B1-204ENST00000414963 CYTH3O43739 400 aa16.54■□□□□ 0.24
SF3B1-204ENST00000414963 GOLGA8HP0CJ92 632 aa16.54■□□□□ 0.24
SF3B1-204ENST00000414963 CCDC96Q2M329 555 aa16.54■□□□□ 0.24
SF3B1-204ENST00000414963 TRIM22Q8IYM9 498 aa16.54■□□□□ 0.24
SF3B1-204ENST00000414963 CMTR1Q8N1G2 835 aaKnown RBP16.54■□□□□ 0.24
SF3B1-204ENST00000414963 PHKBQ93100 1093 aa16.54■□□□□ 0.24
SF3B1-204ENST00000414963 GPCPD1Q9NPB8 672 aa16.54■□□□□ 0.24
SF3B1-204ENST00000414963 ORC3Q9UBD5 711 aaPredicted RBP16.54■□□□□ 0.24
SF3B1-204ENST00000414963 OTOFQ9HC10 1997 aa16.54■□□□□ 0.24
SF3B1-204ENST00000414963 FRMPD2Q68DX3 1309 aaPredicted RBP16.53■□□□□ 0.24
SF3B1-204ENST00000414963 CNTNAP5Q8WYK1 1306 aa16.53■□□□□ 0.24
SF3B1-204ENST00000414963 TRIM75PA6NK02 468 aa16.53■□□□□ 0.24
SF3B1-204ENST00000414963 DEXIO95424 95 aa16.53■□□□□ 0.24
SF3B1-204ENST00000414963 PDCP20941 246 aa16.53■□□□□ 0.24
SF3B1-204ENST00000414963 TTBK2Q6IQ55 1244 aa16.53■□□□□ 0.24
SF3B1-204ENST00000414963 KCTD1Q719H9 257 aa16.53■□□□□ 0.24
SF3B1-204ENST00000414963 SPICE1Q8N0Z3 855 aa16.53■□□□□ 0.24
SF3B1-204ENST00000414963 CNKSR2Q8WXI2 1034 aa16.53■□□□□ 0.24
SF3B1-204ENST00000414963 WASF1Q92558 559 aa16.53■□□□□ 0.24
SF3B1-204ENST00000414963 OPTNQ96CV9 577 aa16.53■□□□□ 0.24
SF3B1-204ENST00000414963 MTMR8Q96EF0 704 aa16.53■□□□□ 0.24
SF3B1-204ENST00000414963 NUP88Q99567 741 aaPredicted RBP16.53■□□□□ 0.24
SF3B1-204ENST00000414963 SLC26A6Q9BXS9 759 aa16.53■□□□□ 0.24
SF3B1-204ENST00000414963 CIZ1Q9ULV3 898 aaPredicted RBP16.53■□□□□ 0.24
SF3B1-204ENST00000414963 V9GY48 417 aaPredicted RBP16.53■□□□□ 0.24
SF3B1-204ENST00000414963 PHIPQ8WWQ0 1821 aa16.53■□□□□ 0.24
SF3B1-204ENST00000414963 A0A0G2JLL6 359 aaPredicted RBP16.52■□□□□ 0.24
SF3B1-204ENST00000414963 IRF6O14896 467 aa16.52■□□□□ 0.24
SF3B1-204ENST00000414963 RAD21O60216 631 aa16.52■□□□□ 0.24
SF3B1-204ENST00000414963 VCAM1P19320 739 aa16.52■□□□□ 0.24
SF3B1-204ENST00000414963 PKN1Q16512 942 aa16.52■□□□□ 0.24
SF3B1-204ENST00000414963 FAM83BQ5T0W9 1011 aa16.52■□□□□ 0.24
SF3B1-204ENST00000414963 PRRT2Q7Z6L0 340 aaPredicted RBP16.52■□□□□ 0.24
SF3B1-204ENST00000414963 CCDC82Q8N4S0 544 aa16.52■□□□□ 0.24
SF3B1-204ENST00000414963 CHURC1Q8WUH1 139 aa16.52■□□□□ 0.24
SF3B1-204ENST00000414963 DDX11Q96FC9 970 aa16.52■□□□□ 0.24
SF3B1-204ENST00000414963 OTUD5Q96G74 571 aa16.52■□□□□ 0.24
SF3B1-204ENST00000414963 UBA5Q9GZZ9 404 aa16.52■□□□□ 0.24
SF3B1-204ENST00000414963 TMOD4Q9NZQ9 345 aa16.52■□□□□ 0.24
SF3B1-204ENST00000414963 FEM1BQ9UK73 627 aa16.52■□□□□ 0.24
SF3B1-204ENST00000414963 TMEM232C9JQI7 657 aa16.51■□□□□ 0.23
SF3B1-204ENST00000414963 HMGCS2P54868 508 aa16.51■□□□□ 0.23
SF3B1-204ENST00000414963 AKAP17AQ02040 695 aaKnown RBP16.51■□□□□ 0.23
SF3B1-204ENST00000414963 ZYXQ15942 572 aaKnown RBP16.51■□□□□ 0.23
SF3B1-204ENST00000414963 SAPCD2Q86UD0 394 aa16.51■□□□□ 0.23
SF3B1-204ENST00000414963 FAM160B2Q86V87 743 aa16.51■□□□□ 0.23
SF3B1-204ENST00000414963 ADGRF4Q8IZF3 695 aa16.51■□□□□ 0.23
SF3B1-204ENST00000414963 FAM184AQ8NB25 1140 aa16.51■□□□□ 0.23
SF3B1-204ENST00000414963 PROCA1Q8NCQ7 364 aaPredicted RBP16.51■□□□□ 0.23
SF3B1-204ENST00000414963 JMJD4Q9H9V9 463 aa16.51■□□□□ 0.23
SF3B1-204ENST00000414963 TRPM7Q96QT4 1865 aa16.5■□□□□ 0.23
SF3B1-204ENST00000414963 DTNBO60941 627 aa16.5■□□□□ 0.23
SF3B1-204ENST00000414963 SYT1P21579 422 aa16.5■□□□□ 0.23
SF3B1-204ENST00000414963 SLC16A2P36021 539 aa16.5■□□□□ 0.23
SF3B1-204ENST00000414963 GJA5P36382 358 aa16.5■□□□□ 0.23
SF3B1-204ENST00000414963 STAT2P52630 851 aa16.5■□□□□ 0.23
SF3B1-204ENST00000414963 HUNKP57058 714 aa16.5■□□□□ 0.23
SF3B1-204ENST00000414963 PFKFB3Q16875 520 aaPredicted RBP16.5■□□□□ 0.23
SF3B1-204ENST00000414963 SYDE2Q5VT97 1194 aa16.5■□□□□ 0.23
SF3B1-204ENST00000414963 LARP1BQ659C4 914 aaKnown RBP16.5■□□□□ 0.23
SF3B1-204ENST00000414963 FAM177A1Q8N128 213 aaPredicted RBP16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms