RNA–Protein interactions for RNA: ENST00000409025.5

USP39-202, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5 BASIC

Gene USP39, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-202ENST00000409025 PDHBP11177 359 aa21.72■■□□□ 1.07
USP39-202ENST00000409025 TRAPPC10P48553 1259 aa21.72■■□□□ 1.07
USP39-202ENST00000409025 ASPRV1Q53RT3 343 aa21.72■■□□□ 1.07
USP39-202ENST00000409025 FOXP4Q8IVH2 680 aaPredicted RBP21.72■■□□□ 1.07
USP39-202ENST00000409025 LRRC47Q8N1G4 583 aaKnown RBP21.72■■□□□ 1.07
USP39-202ENST00000409025 RRP36Q96EU6 259 aaKnown RBP21.72■■□□□ 1.07
USP39-202ENST00000409025 DNAJC25Q9H1X3 360 aa21.72■■□□□ 1.07
USP39-202ENST00000409025 BARHL2Q9NY43 387 aa21.72■■□□□ 1.07
USP39-202ENST00000409025 FAM13BQ9NYF5 915 aa21.72■■□□□ 1.07
USP39-202ENST00000409025 PSMD14O00487 310 aa21.71■■□□□ 1.07
USP39-202ENST00000409025 EIF6P56537 245 aaKnown RBP21.71■■□□□ 1.07
USP39-202ENST00000409025 TTC38Q5R3I4 469 aa21.71■■□□□ 1.07
USP39-202ENST00000409025 PIK3AP1Q6ZUJ8 805 aa21.71■■□□□ 1.07
USP39-202ENST00000409025 PRMT6Q96LA8 375 aaPredicted RBP21.71■■□□□ 1.07
USP39-202ENST00000409025 MTFR1LQ9H019 292 aa21.71■■□□□ 1.07
USP39-202ENST00000409025 CBX8Q9HC52 389 aa21.71■■□□□ 1.07
USP39-202ENST00000409025 ANO10Q9NW15 660 aa21.71■■□□□ 1.07
USP39-202ENST00000409025 SEC63Q9UGP8 760 aaKnown RBP21.71■■□□□ 1.07
USP39-202ENST00000409025 HDAC9Q9UKV0 1011 aa21.71■■□□□ 1.07
USP39-202ENST00000409025 ATF5Q9Y2D1 282 aaPredicted RBP21.71■■□□□ 1.07
USP39-202ENST00000409025 SIPA1L1O43166 1804 aa21.71■■□□□ 1.07
USP39-202ENST00000409025 GREB1LQ9C091 1923 aaPredicted RBP21.71■■□□□ 1.07
USP39-202ENST00000409025 STXBP3O00186 592 aa21.7■■□□□ 1.07
USP39-202ENST00000409025 ZNF165P49910 485 aa21.7■■□□□ 1.07
USP39-202ENST00000409025 SH3BP5LQ7L8J4 393 aa21.7■■□□□ 1.07
USP39-202ENST00000409025 CCDC12Q8WUD4 166 aaPredicted RBP21.7■■□□□ 1.07
USP39-202ENST00000409025 DNAJC18Q9H819 358 aa21.7■■□□□ 1.07
USP39-202ENST00000409025 KIAA1468Q9P260 1216 aa21.7■■□□□ 1.07
USP39-202ENST00000409025 KCNH3Q9ULD8 1083 aa21.7■■□□□ 1.07
USP39-202ENST00000409025 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP21.7■■□□□ 1.06
USP39-202ENST00000409025 NOM1Q5C9Z4 860 aaKnown RBP21.7■■□□□ 1.06
USP39-202ENST00000409025 NIM1KQ8IY84 436 aa21.7■■□□□ 1.06
USP39-202ENST00000409025 DAGLBQ8NCG7 672 aa21.7■■□□□ 1.06
USP39-202ENST00000409025 CPVLQ9H3G5 476 aa21.7■■□□□ 1.06
USP39-202ENST00000409025 TMOD2Q9NZR1 351 aa21.7■■□□□ 1.06
USP39-202ENST00000409025 SNHG28P0DPA3 235 aa21.69■■□□□ 1.06
USP39-202ENST00000409025 ZRSR1Q15695 479 aaKnown RBP21.69■■□□□ 1.06
USP39-202ENST00000409025 CERKLQ49MI3 558 aaPredicted RBP21.69■■□□□ 1.06
USP39-202ENST00000409025 TYW1BQ6NUM6 668 aa21.69■■□□□ 1.06
USP39-202ENST00000409025 LUZP1Q86V48 1076 aa21.69■■□□□ 1.06
USP39-202ENST00000409025 CLEC10AQ8IUN9 316 aa21.69■■□□□ 1.06
USP39-202ENST00000409025 ZNRF3Q9ULT6 936 aa21.69■■□□□ 1.06
USP39-202ENST00000409025 ZNF174Q15697 407 aa21.68■■□□□ 1.06
USP39-202ENST00000409025 HS1BP3Q53T59 392 aa21.68■■□□□ 1.06
USP39-202ENST00000409025 DALRD3Q5D0E6 543 aaKnown RBP21.68■■□□□ 1.06
USP39-202ENST00000409025 FAM43AQ8N2R8 423 aa21.68■■□□□ 1.06
USP39-202ENST00000409025 OGFOD1Q8N543 542 aa21.68■■□□□ 1.06
USP39-202ENST00000409025 GMLQ99445 158 aa21.68■■□□□ 1.06
USP39-202ENST00000409025 RIOX1Q9H6W3 641 aa21.68■■□□□ 1.06
USP39-202ENST00000409025 COL4A5P29400 1685 aa21.68■■□□□ 1.06
USP39-202ENST00000409025 FRMPD2Q68DX3 1309 aaPredicted RBP21.68■■□□□ 1.06
USP39-202ENST00000409025 COL2A1P02458 1487 aaPredicted RBP21.68■■□□□ 1.06
USP39-202ENST00000409025 ATRNL1Q5VV63 1379 aa21.68■■□□□ 1.06
USP39-202ENST00000409025 ADCY5O95622 1261 aa21.68■■□□□ 1.06
USP39-202ENST00000409025 GRIN1Q05586 938 aa21.68■■□□□ 1.06
USP39-202ENST00000409025 HOMER1Q86YM7 354 aa21.68■■□□□ 1.06
USP39-202ENST00000409025 ERCC4Q92889 916 aaPredicted RBP21.68■■□□□ 1.06
USP39-202ENST00000409025 FERMT2Q96AC1 680 aa21.68■■□□□ 1.06
USP39-202ENST00000409025 UBA5Q9GZZ9 404 aa21.68■■□□□ 1.06
USP39-202ENST00000409025 VAT1LQ9HCJ6 419 aa21.68■■□□□ 1.06
USP39-202ENST00000409025 SPDYE2BA6NHP3 402 aa21.67■■□□□ 1.06
USP39-202ENST00000409025 FAM196BA6NMK8 535 aa21.67■■□□□ 1.06
USP39-202ENST00000409025 SPDYE6P0CI01 402 aa21.67■■□□□ 1.06
USP39-202ENST00000409025 SLURP2P0DP57 97 aa21.67■■□□□ 1.06
USP39-202ENST00000409025 NAPAP54920 295 aa21.67■■□□□ 1.06
USP39-202ENST00000409025 PLCB2Q00722 1185 aa21.67■■□□□ 1.06
USP39-202ENST00000409025 ATP2B2Q01814 1243 aa21.67■■□□□ 1.06
USP39-202ENST00000409025 DLGAP5Q15398 846 aa21.67■■□□□ 1.06
USP39-202ENST00000409025 SPECC1Q5M775 1068 aa21.67■■□□□ 1.06
USP39-202ENST00000409025 TATDN1Q6P1N9 297 aa21.67■■□□□ 1.06
USP39-202ENST00000409025 PIGSQ96S52 555 aa21.67■■□□□ 1.06
USP39-202ENST00000409025 MYH4Q9Y623 1939 aa21.67■■□□□ 1.06
USP39-202ENST00000409025 CCDC194A0A1B0GVG4 234 aa21.67■■□□□ 1.06
USP39-202ENST00000409025 ADAMTS3O15072 1205 aa21.67■■□□□ 1.06
USP39-202ENST00000409025 METTL16Q86W50 562 aaKnown RBP21.67■■□□□ 1.06
USP39-202ENST00000409025 CSRNP2Q9H175 543 aa21.67■■□□□ 1.06
USP39-202ENST00000409025 hCG_1984214I3L0E3 225 aa21.66■■□□□ 1.06
USP39-202ENST00000409025 M0R2N6 131 aa21.66■■□□□ 1.06
USP39-202ENST00000409025 WNT7AO00755 349 aa21.66■■□□□ 1.06
USP39-202ENST00000409025 ATP2C1P98194 919 aaPredicted RBP21.66■■□□□ 1.06
USP39-202ENST00000409025 ZNF543Q08ER8 600 aa21.66■■□□□ 1.06
USP39-202ENST00000409025 KRBA2Q6ZNG9 492 aa21.66■■□□□ 1.06
USP39-202ENST00000409025 C11orf57Q6ZUT1 292 aaPredicted RBP21.66■■□□□ 1.06
USP39-202ENST00000409025 ZNF713Q8N859 430 aaPredicted RBP21.66■■□□□ 1.06
USP39-202ENST00000409025 CNNM3Q8NE01 707 aa21.66■■□□□ 1.06
USP39-202ENST00000409025 NAT10Q9H0A0 1025 aaKnown RBP21.66■■□□□ 1.06
USP39-202ENST00000409025 ZMYND12Q9H0C1 365 aa21.66■■□□□ 1.06
USP39-202ENST00000409025 KANSL2Q9H9L4 492 aa21.66■■□□□ 1.06
USP39-202ENST00000409025 GPCPD1Q9NPB8 672 aa21.66■■□□□ 1.06
USP39-202ENST00000409025 PCDHA6Q9UN73 950 aa21.66■■□□□ 1.06
USP39-202ENST00000409025 PCDHA8Q9Y5H6 950 aa21.66■■□□□ 1.06
USP39-202ENST00000409025 GPATCH4Q5T3I0 446 aaKnown RBP21.65■■□□□ 1.06
USP39-202ENST00000409025 ELOA2Q8IYF1 753 aaPredicted RBP21.65■■□□□ 1.06
USP39-202ENST00000409025 CEP57L1Q8IYX8 460 aa21.65■■□□□ 1.06
USP39-202ENST00000409025 AGBL3Q8NEM8 1001 aa21.65■■□□□ 1.06
USP39-202ENST00000409025 C6orf50Q9HD87 102 aa21.65■■□□□ 1.06
USP39-202ENST00000409025 NYAP2Q9P242 653 aa21.65■■□□□ 1.06
USP39-202ENST00000409025 CCDC39Q9UFE4 941 aa21.65■■□□□ 1.06
USP39-202ENST00000409025 GNA11P29992 359 aa21.65■■□□□ 1.06
USP39-202ENST00000409025 PTGDRQ13258 359 aa21.65■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms