RNA–Protein interactions for RNA: ENST00000404909.5

RTN4-208, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,102 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-208ENST00000404909 KIF28PB7ZC32 967 aa4.28□□□□□ -1.72
RTN4-208ENST00000404909 ADM5C9JUS6 153 aa4.28□□□□□ -1.72
RTN4-208ENST00000404909 ASNSP08243 561 aa4.28□□□□□ -1.72
RTN4-208ENST00000404909 SCG2P13521 617 aa4.28□□□□□ -1.72
RTN4-208ENST00000404909 INPP5BP32019 993 aa4.28□□□□□ -1.72
RTN4-208ENST00000404909 NOVP48745 357 aa4.28□□□□□ -1.72
RTN4-208ENST00000404909 KRT85P78386 507 aa4.28□□□□□ -1.72
RTN4-208ENST00000404909 RESTQ13127 1097 aa4.28□□□□□ -1.72
RTN4-208ENST00000404909 DCAF15Q66K64 600 aa4.28□□□□□ -1.72
RTN4-208ENST00000404909 CLEC17AQ6ZS10 378 aa4.28□□□□□ -1.72
RTN4-208ENST00000404909 USP48Q86UV5 1035 aa4.28□□□□□ -1.72
RTN4-208ENST00000404909 ZKSCAN4Q969J2 545 aaPredicted RBP4.28□□□□□ -1.72
RTN4-208ENST00000404909 WRNIP1Q96S55 665 aa4.28□□□□□ -1.72
RTN4-208ENST00000404909 FEZ1Q99689 392 aa4.28□□□□□ -1.72
RTN4-208ENST00000404909 GLIS2Q9BZE0 524 aaPredicted RBP4.28□□□□□ -1.72
RTN4-208ENST00000404909 ZSCAN16Q9H4T2 348 aaPredicted RBP4.28□□□□□ -1.72
RTN4-208ENST00000404909 ARHGEF10LQ9HCE6 1279 aa4.28□□□□□ -1.72
RTN4-208ENST00000404909 SEC63Q9UGP8 760 aaKnown RBP4.28□□□□□ -1.72
RTN4-208ENST00000404909 CLEC11AQ9Y240 323 aa4.28□□□□□ -1.72
RTN4-208ENST00000404909 DICER1Q9UPY3 1922 aaKnown RBP4.28□□□□□ -1.72
RTN4-208ENST00000404909 PHF20L1A8MW92 1017 aa4.28□□□□□ -1.72
RTN4-208ENST00000404909 BTBD18B2RXH4 712 aa4.28□□□□□ -1.72
RTN4-208ENST00000404909 ZNF543Q08ER8 600 aa4.28□□□□□ -1.72
RTN4-208ENST00000404909 SLC35G1Q2M3R5 365 aa4.28□□□□□ -1.72
RTN4-208ENST00000404909 ASPRV1Q53RT3 343 aa4.28□□□□□ -1.72
RTN4-208ENST00000404909 DIS3L2Q8IYB7 885 aaKnown RBP4.28□□□□□ -1.72
RTN4-208ENST00000404909 RRP36Q96EU6 259 aaKnown RBP4.28□□□□□ -1.72
RTN4-208ENST00000404909 PIGSQ96S52 555 aa4.28□□□□□ -1.72
RTN4-208ENST00000404909 LZTS2Q9BRK4 669 aa4.28□□□□□ -1.72
RTN4-208ENST00000404909 FTOQ9C0B1 505 aaKnown RBP eCLIP4.28□□□□□ -1.722e-14■□□□□ 10
RTN4-208ENST00000404909 GZF1Q9H116 711 aaPredicted RBP4.28□□□□□ -1.72
RTN4-208ENST00000404909 SIPA1L1O43166 1804 aa4.28□□□□□ -1.72
RTN4-208ENST00000404909 TRAK2O60296 914 aa4.28□□□□□ -1.72
RTN4-208ENST00000404909 NDUFB10O96000 172 aa4.28□□□□□ -1.72
RTN4-208ENST00000404909 MMP1P03956 469 aa4.28□□□□□ -1.72
RTN4-208ENST00000404909 ATP2B1P20020 1258 aa4.28□□□□□ -1.72
RTN4-208ENST00000404909 NLRP5P59047 1200 aa4.28□□□□□ -1.72
RTN4-208ENST00000404909 KIF23Q02241 960 aaPredicted RBP4.28□□□□□ -1.72
RTN4-208ENST00000404909 NR5A1Q13285 461 aa4.28□□□□□ -1.72
RTN4-208ENST00000404909 PFKFB3Q16875 520 aaPredicted RBP4.28□□□□□ -1.72
RTN4-208ENST00000404909 SUPT20HL1Q3ZLR7 823 aa4.28□□□□□ -1.72
RTN4-208ENST00000404909 OXER1Q8TDS5 423 aa4.28□□□□□ -1.72
RTN4-208ENST00000404909 ZNF526Q8TF50 670 aaPredicted RBP4.28□□□□□ -1.72
RTN4-208ENST00000404909 MKL1Q969V6 931 aa4.28□□□□□ -1.72
RTN4-208ENST00000404909 L3MBTL3Q96JM7 780 aaPredicted RBP4.28□□□□□ -1.72
RTN4-208ENST00000404909 ANP32EQ9BTT0 268 aa4.28□□□□□ -1.72
RTN4-208ENST00000404909 ZNF341Q9BYN7 854 aa4.28□□□□□ -1.72
RTN4-208ENST00000404909 DDX49Q9Y6V7 483 aaKnown RBP4.28□□□□□ -1.72
RTN4-208ENST00000404909 IQCA1LA6NCM1 817 aa4.27□□□□□ -1.73
RTN4-208ENST00000404909 TMEM232C9JQI7 657 aa4.27□□□□□ -1.73
RTN4-208ENST00000404909 CTNND1O60716 968 aaKnown RBP4.27□□□□□ -1.73
RTN4-208ENST00000404909 SNHG28P0DPA3 235 aa4.27□□□□□ -1.73
RTN4-208ENST00000404909 MAP3K10Q02779 954 aa4.27□□□□□ -1.73
RTN4-208ENST00000404909 TTLL12Q14166 644 aaPredicted RBP4.27□□□□□ -1.73
RTN4-208ENST00000404909 GPATCH4Q5T3I0 446 aaKnown RBP4.27□□□□□ -1.73
RTN4-208ENST00000404909 USP50Q70EL3 339 aaPredicted RBP4.27□□□□□ -1.73
RTN4-208ENST00000404909 ADGRF4Q8IZF3 695 aa4.27□□□□□ -1.73
RTN4-208ENST00000404909 HOOK2Q96ED9 719 aa4.27□□□□□ -1.73
RTN4-208ENST00000404909 SPATA32Q96LK8 384 aa4.27□□□□□ -1.73
RTN4-208ENST00000404909 SPZ1Q9BXG8 430 aa4.27□□□□□ -1.73
RTN4-208ENST00000404909 TAF1DQ9H5J8 278 aaPredicted RBP4.27□□□□□ -1.73
RTN4-208ENST00000404909 BRMS1Q9HCU9 246 aa4.27□□□□□ -1.73
RTN4-208ENST00000404909 GOPCQ9HD26 462 aa4.27□□□□□ -1.73
RTN4-208ENST00000404909 PICK1Q9NRD5 415 aa4.27□□□□□ -1.73
RTN4-208ENST00000404909 LMBRD1Q9NUN5 540 aa4.27□□□□□ -1.73
RTN4-208ENST00000404909 RBM27Q9P2N5 1060 aaKnown RBP4.27□□□□□ -1.73
RTN4-208ENST00000404909 POLR2AP24928 1970 aaKnown RBP4.27□□□□□ -1.73
RTN4-208ENST00000404909 USP17L10C9JJH3 530 aa4.27□□□□□ -1.73
RTN4-208ENST00000404909 GADD45BO75293 160 aaPredicted RBP4.27□□□□□ -1.73
RTN4-208ENST00000404909 POTEIP0CG38 1075 aa4.27□□□□□ -1.73
RTN4-208ENST00000404909 POTEJP0CG39 1038 aa4.27□□□□□ -1.73
RTN4-208ENST00000404909 BMP3P12645 472 aa4.27□□□□□ -1.73
RTN4-208ENST00000404909 NAPAP54920 295 aa4.27□□□□□ -1.73
RTN4-208ENST00000404909 SNAP25P60880 206 aa4.27□□□□□ -1.73
RTN4-208ENST00000404909 DGKZQ13574 1117 aa4.27□□□□□ -1.73
RTN4-208ENST00000404909 FAM83BQ5T0W9 1011 aa4.27□□□□□ -1.73
RTN4-208ENST00000404909 WWC2Q6AWC2 1192 aa4.27□□□□□ -1.73
RTN4-208ENST00000404909 DCAF4Q8WV16 495 aa4.27□□□□□ -1.73
RTN4-208ENST00000404909 SHISA4Q96DD7 197 aa4.27□□□□□ -1.73
RTN4-208ENST00000404909 USP28Q96RU2 1077 aa4.27□□□□□ -1.73
RTN4-208ENST00000404909 CFAP45Q9UL16 551 aa4.27□□□□□ -1.73
RTN4-208ENST00000404909 GOLGA6L4A6NEF3 574 aa4.27□□□□□ -1.73
RTN4-208ENST00000404909 TRIM75PA6NK02 468 aa4.27□□□□□ -1.73
RTN4-208ENST00000404909 PPP1R12BO60237 982 aaPredicted RBP4.27□□□□□ -1.73
RTN4-208ENST00000404909 KRT2P35908 639 aa4.27□□□□□ -1.73
RTN4-208ENST00000404909 KIAA1755Q5JYT7 1200 aa4.27□□□□□ -1.73
RTN4-208ENST00000404909 MYSM1Q5VVJ2 828 aa4.27□□□□□ -1.73
RTN4-208ENST00000404909 TYW1BQ6NUM6 668 aa4.27□□□□□ -1.73
RTN4-208ENST00000404909 BRAPQ7Z569 592 aa4.27□□□□□ -1.73
RTN4-208ENST00000404909 NOSTRINQ8IVI9 506 aa4.27□□□□□ -1.73
RTN4-208ENST00000404909 GMCL1P1Q8NEA9 526 aa4.27□□□□□ -1.73
RTN4-208ENST00000404909 COA7Q96BR5 231 aa4.27□□□□□ -1.73
RTN4-208ENST00000404909 ZNF396Q96N95 335 aaPredicted RBP4.27□□□□□ -1.73
RTN4-208ENST00000404909 SCAND2PQ9GZW5 306 aaPredicted RBP4.27□□□□□ -1.73
RTN4-208ENST00000404909 SH2D4AQ9H788 454 aa4.27□□□□□ -1.73
RTN4-208ENST00000404909 ZNF408Q9H9D4 720 aa4.27□□□□□ -1.73
RTN4-208ENST00000404909 JMJD4Q9H9V9 463 aa4.27□□□□□ -1.73
RTN4-208ENST00000404909 TMX2Q9Y320 296 aa4.27□□□□□ -1.73
RTN4-208ENST00000404909 PPP2R3BQ9Y5P8 575 aa4.27□□□□□ -1.73
RTN4-208ENST00000404909 ZHX2Q9Y6X8 837 aa4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 5.9 ms