RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 FAM217BQ9NTX9 383 aaPredicted RBP21.03■□□□□ 0.96
SDC1-203ENST00000403076 TMOD4Q9NZQ9 345 aa21.03■□□□□ 0.96
SDC1-203ENST00000403076 MAD2L2Q9UI95 211 aa21.03■□□□□ 0.96
SDC1-203ENST00000403076 ZSCAN21Q9Y5A6 473 aaPredicted RBP21.03■□□□□ 0.96
SDC1-203ENST00000403076 TMEM88BA6NKF7 163 aa21.02■□□□□ 0.96
SDC1-203ENST00000403076 IRF6O14896 467 aa21.02■□□□□ 0.96
SDC1-203ENST00000403076 SNHG28P0DPA3 235 aa21.02■□□□□ 0.96
SDC1-203ENST00000403076 BMP3P12645 472 aa21.02■□□□□ 0.96
SDC1-203ENST00000403076 HMGCS2P54868 508 aa21.02■□□□□ 0.96
SDC1-203ENST00000403076 ZNF543Q08ER8 600 aa21.02■□□□□ 0.96
SDC1-203ENST00000403076 ST3GAL1Q11201 340 aa21.02■□□□□ 0.96
SDC1-203ENST00000403076 GPATCH4Q5T3I0 446 aaKnown RBP21.02■□□□□ 0.96
SDC1-203ENST00000403076 STAG2Q8N3U4 1231 aa21.02■□□□□ 0.96
SDC1-203ENST00000403076 NUP88Q99567 741 aaPredicted RBP21.02■□□□□ 0.96
SDC1-203ENST00000403076 ABT1Q9ULW3 272 aaKnown RBP21.02■□□□□ 0.96
SDC1-203ENST00000403076 PALM3A6NDB9 673 aaPredicted RBP21.01■□□□□ 0.95
SDC1-203ENST00000403076 KLRF2D3W0D1 207 aa21.01■□□□□ 0.95
SDC1-203ENST00000403076 CXCL11O14625 94 aa21.01■□□□□ 0.95
SDC1-203ENST00000403076 CDKL5O76039 1030 aa21.01■□□□□ 0.95
SDC1-203ENST00000403076 IKQ13123 557 aaPredicted RBP21.01■□□□□ 0.95
SDC1-203ENST00000403076 KIAA1755Q5JYT7 1200 aa21.01■□□□□ 0.95
SDC1-203ENST00000403076 LPAR1Q92633 364 aa21.01■□□□□ 0.95
SDC1-203ENST00000403076 LZTS2Q9BRK4 669 aa21.01■□□□□ 0.95
SDC1-203ENST00000403076 NID2Q14112 1375 aa21.01■□□□□ 0.95
SDC1-203ENST00000403076 PPFIA3O75145 1194 aa21■□□□□ 0.95
SDC1-203ENST00000403076 PLEKHA8P1O95397 391 aa21■□□□□ 0.95
SDC1-203ENST00000403076 FAM83BQ5T0W9 1011 aa21■□□□□ 0.95
SDC1-203ENST00000403076 TMTC3Q6ZXV5 915 aa21■□□□□ 0.95
SDC1-203ENST00000403076 SAPCD2Q86UD0 394 aa21■□□□□ 0.95
SDC1-203ENST00000403076 CMTR1Q8N1G2 835 aaKnown RBP21■□□□□ 0.95
SDC1-203ENST00000403076 WNK4Q96J92 1243 aa21■□□□□ 0.95
SDC1-203ENST00000403076 EMILIN3Q9NT22 766 aa21■□□□□ 0.95
SDC1-203ENST00000403076 SMC3Q9UQE7 1217 aa21■□□□□ 0.95
SDC1-203ENST00000403076 TMEM232C9JQI7 657 aa20.99■□□□□ 0.95
SDC1-203ENST00000403076 DTNBO60941 627 aa20.99■□□□□ 0.95
SDC1-203ENST00000403076 ZNF157P51786 506 aaPredicted RBP20.99■□□□□ 0.95
SDC1-203ENST00000403076 DGKZQ13574 1117 aa20.99■□□□□ 0.95
SDC1-203ENST00000403076 INTS4Q96HW7 963 aaKnown RBP20.99■□□□□ 0.95
SDC1-203ENST00000403076 LLPHQ9BRT6 129 aaKnown RBP20.99■□□□□ 0.95
SDC1-203ENST00000403076 TLL2Q9Y6L7 1015 aa20.99■□□□□ 0.95
SDC1-203ENST00000403076 WDR46O15213 610 aaKnown RBP20.99■□□□□ 0.95
SDC1-203ENST00000403076 IFNAR1P17181 557 aa20.99■□□□□ 0.95
SDC1-203ENST00000403076 AKAP17AQ02040 695 aaKnown RBP20.99■□□□□ 0.95
SDC1-203ENST00000403076 SSRP1Q08945 709 aaKnown RBP20.99■□□□□ 0.95
SDC1-203ENST00000403076 MKRN3Q13064 507 aaKnown RBP20.99■□□□□ 0.95
SDC1-203ENST00000403076 SH3D19Q5HYK7 790 aa20.99■□□□□ 0.95
SDC1-203ENST00000403076 TTBK2Q6IQ55 1244 aa20.99■□□□□ 0.95
SDC1-203ENST00000403076 GADL1Q6ZQY3 521 aa20.99■□□□□ 0.95
SDC1-203ENST00000403076 UBA5Q9GZZ9 404 aa20.99■□□□□ 0.95
SDC1-203ENST00000403076 KCNH4Q9UQ05 1017 aa20.99■□□□□ 0.95
SDC1-203ENST00000403076 PTPDC1A2A3K4 754 aa20.98■□□□□ 0.95
SDC1-203ENST00000403076 CTDNEP1O95476 244 aa20.98■□□□□ 0.95
SDC1-203ENST00000403076 VCAM1P19320 739 aa20.98■□□□□ 0.95
SDC1-203ENST00000403076 GJA5P36382 358 aa20.98■□□□□ 0.95
SDC1-203ENST00000403076 SNAPC2Q13487 334 aa20.98■□□□□ 0.95
SDC1-203ENST00000403076 NTRK3Q16288 839 aa20.98■□□□□ 0.95
SDC1-203ENST00000403076 RGMBQ6NW40 437 aa20.98■□□□□ 0.95
SDC1-203ENST00000403076 SAMD1Q6SPF0 538 aaPredicted RBP20.98■□□□□ 0.95
SDC1-203ENST00000403076 TRIM22Q8IYM9 498 aa20.98■□□□□ 0.95
SDC1-203ENST00000403076 SRBD1Q8N5C6 995 aaKnown RBP20.98■□□□□ 0.95
SDC1-203ENST00000403076 NSUN7Q8NE18 718 aaKnown RBP20.98■□□□□ 0.95
SDC1-203ENST00000403076 PHKBQ93100 1093 aa20.98■□□□□ 0.95
SDC1-203ENST00000403076 DDX11Q96FC9 970 aa20.98■□□□□ 0.95
SDC1-203ENST00000403076 C12orf42Q96LP6 360 aa20.98■□□□□ 0.95
SDC1-203ENST00000403076 SLC26A6Q9BXS9 759 aa20.98■□□□□ 0.95
SDC1-203ENST00000403076 TANGO6Q9C0B7 1094 aa20.98■□□□□ 0.95
SDC1-203ENST00000403076 CPVLQ9H3G5 476 aa20.98■□□□□ 0.95
SDC1-203ENST00000403076 VAT1LQ9HCJ6 419 aa20.98■□□□□ 0.95
SDC1-203ENST00000403076 PHIPQ8WWQ0 1821 aa20.98■□□□□ 0.95
SDC1-203ENST00000403076 JAK2O60674 1132 aa20.97■□□□□ 0.95
SDC1-203ENST00000403076 SLC16A2P36021 539 aa20.97■□□□□ 0.95
SDC1-203ENST00000403076 HMGN5P82970 282 aaKnown RBP20.97■□□□□ 0.95
SDC1-203ENST00000403076 SPRYD7Q5W111 196 aa20.97■□□□□ 0.95
SDC1-203ENST00000403076 CHURC1Q8WUH1 139 aa20.97■□□□□ 0.95
SDC1-203ENST00000403076 PIBF1Q8WXW3 757 aa20.97■□□□□ 0.95
SDC1-203ENST00000403076 RPAP3Q9H6T3 665 aaPredicted RBP20.97■□□□□ 0.95
SDC1-203ENST00000403076 A0A0G2JLL6 359 aaPredicted RBP20.96■□□□□ 0.95
SDC1-203ENST00000403076 GTF2A2P52657 109 aa20.96■□□□□ 0.95
SDC1-203ENST00000403076 PAXIP1Q6ZW49 1069 aaPredicted RBP20.96■□□□□ 0.95
SDC1-203ENST00000403076 FASTKD5Q7L8L6 764 aaKnown RBP20.96■□□□□ 0.95
SDC1-203ENST00000403076 PRRT2Q7Z6L0 340 aaPredicted RBP20.96■□□□□ 0.95
SDC1-203ENST00000403076 NBPF11Q86T75 865 aa20.96■□□□□ 0.95
SDC1-203ENST00000403076 FAM184AQ8NB25 1140 aa20.96■□□□□ 0.95
SDC1-203ENST00000403076 ORC3Q9UBD5 711 aaPredicted RBP20.96■□□□□ 0.95
SDC1-203ENST00000403076 FEM1BQ9UK73 627 aa20.96■□□□□ 0.95
SDC1-203ENST00000403076 ZBTB48P10074 688 aaPredicted RBP20.95■□□□□ 0.94
SDC1-203ENST00000403076 GJB2P29033 226 aa20.95■□□□□ 0.94
SDC1-203ENST00000403076 STAT2P52630 851 aa20.95■□□□□ 0.94
SDC1-203ENST00000403076 PROCA1Q8NCQ7 364 aaPredicted RBP20.95■□□□□ 0.94
SDC1-203ENST00000403076 SPZ1Q9BXG8 430 aa20.95■□□□□ 0.94
SDC1-203ENST00000403076 KIF3AQ9Y496 699 aa20.95■□□□□ 0.94
SDC1-203ENST00000403076 V9GY48 417 aaPredicted RBP20.95■□□□□ 0.94
SDC1-203ENST00000403076 FMNL1O95466 1100 aaPredicted RBP20.94■□□□□ 0.94
SDC1-203ENST00000403076 SMARCA1P28370 1054 aa20.94■□□□□ 0.94
SDC1-203ENST00000403076 FUT2Q10981 343 aa20.94■□□□□ 0.94
SDC1-203ENST00000403076 SYDE2Q5VT97 1194 aa20.94■□□□□ 0.94
SDC1-203ENST00000403076 FAM160B2Q86V87 743 aa20.94■□□□□ 0.94
SDC1-203ENST00000403076 RASAL3Q86YV0 1011 aa20.94■□□□□ 0.94
SDC1-203ENST00000403076 SMARCC2Q8TAQ2 1214 aa20.94■□□□□ 0.94
SDC1-203ENST00000403076 CNTNAP5Q8WYK1 1306 aa20.94■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms