RNA–Protein interactions for RNA: ENST00000401473.7

HMGA1-204, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-204ENST00000401473 RPAP3Q9H6T3 665 aaPredicted RBP18.66■□□□□ 0.58
HMGA1-204ENST00000401473 CCDC69A6NI79 296 aa18.65■□□□□ 0.58
HMGA1-204ENST00000401473 HOXA7P31268 230 aaPredicted RBP18.65■□□□□ 0.58
HMGA1-204ENST00000401473 SLC1A4P43007 532 aa18.65■□□□□ 0.58
HMGA1-204ENST00000401473 EVCP57679 992 aa18.65■□□□□ 0.58
HMGA1-204ENST00000401473 KCTD1Q719H9 257 aa18.65■□□□□ 0.58
HMGA1-204ENST00000401473 WBP1LQ9NX94 342 aa18.65■□□□□ 0.58
HMGA1-204ENST00000401473 RLFQ13129 1914 aa18.65■□□□□ 0.58
HMGA1-204ENST00000401473 PDHXO00330 501 aa18.65■□□□□ 0.58
HMGA1-204ENST00000401473 GOLGA8HP0CJ92 632 aa18.65■□□□□ 0.58
HMGA1-204ENST00000401473 MAP2K1Q02750 393 aaPredicted RBP18.65■□□□□ 0.58
HMGA1-204ENST00000401473 RABEP1Q15276 862 aa18.65■□□□□ 0.58
HMGA1-204ENST00000401473 CATSPERGQ6ZRH7 1159 aa18.65■□□□□ 0.58
HMGA1-204ENST00000401473 CATIPQ7Z7H3 387 aa18.65■□□□□ 0.58
HMGA1-204ENST00000401473 REM2Q8IYK8 340 aaPredicted RBP18.65■□□□□ 0.58
HMGA1-204ENST00000401473 STAG2Q8N3U4 1231 aa18.65■□□□□ 0.58
HMGA1-204ENST00000401473 FBXO28Q9NVF7 368 aa18.65■□□□□ 0.58
HMGA1-204ENST00000401473 SLC12A7Q9Y666 1083 aa18.65■□□□□ 0.58
HMGA1-204ENST00000401473 KLF18A0A0U1RQI7 1052 aa18.64■□□□□ 0.57
HMGA1-204ENST00000401473 WDR46O15213 610 aaKnown RBP18.64■□□□□ 0.57
HMGA1-204ENST00000401473 CD2BP2O95400 341 aaKnown RBP18.64■□□□□ 0.57
HMGA1-204ENST00000401473 BMP3P12645 472 aa18.64■□□□□ 0.57
HMGA1-204ENST00000401473 TTBK2Q6IQ55 1244 aa18.64■□□□□ 0.57
HMGA1-204ENST00000401473 POTEEQ6S8J3 1075 aa18.64■□□□□ 0.57
HMGA1-204ENST00000401473 ANKRD23Q86SG2 305 aa18.64■□□□□ 0.57
HMGA1-204ENST00000401473 NUP133Q8WUM0 1156 aa18.64■□□□□ 0.57
HMGA1-204ENST00000401473 RNF186Q9NXI6 227 aa18.64■□□□□ 0.57
HMGA1-204ENST00000401473 FRMPD2Q68DX3 1309 aaPredicted RBP18.64■□□□□ 0.57
HMGA1-204ENST00000401473 TRPA1O75762 1119 aa18.63■□□□□ 0.57
HMGA1-204ENST00000401473 ZNF543Q08ER8 600 aa18.63■□□□□ 0.57
HMGA1-204ENST00000401473 CCDC144CPQ8IYA2 1237 aa18.63■□□□□ 0.57
HMGA1-204ENST00000401473 DCAF4Q8WV16 495 aa18.63■□□□□ 0.57
HMGA1-204ENST00000401473 ASCC2Q9H1I8 757 aaPredicted RBP18.63■□□□□ 0.57
HMGA1-204ENST00000401473 R3HDMLQ9H3Y0 253 aa18.63■□□□□ 0.57
HMGA1-204ENST00000401473 MAD2L2Q9UI95 211 aa18.63■□□□□ 0.57
HMGA1-204ENST00000401473 TPCN1Q9ULQ1 816 aa18.63■□□□□ 0.57
HMGA1-204ENST00000401473 HPS5Q9UPZ3 1129 aa18.63■□□□□ 0.57
HMGA1-204ENST00000401473 USP17L15C9J2P7 530 aa18.63■□□□□ 0.57
HMGA1-204ENST00000401473 USP17L13C9JLJ4 530 aa18.63■□□□□ 0.57
HMGA1-204ENST00000401473 USP17L11C9JVI0 530 aa18.63■□□□□ 0.57
HMGA1-204ENST00000401473 USP17L18D6R9N7 530 aa18.63■□□□□ 0.57
HMGA1-204ENST00000401473 USP17L22D6RA61 530 aa18.63■□□□□ 0.57
HMGA1-204ENST00000401473 USP17L17D6RBQ6 530 aa18.63■□□□□ 0.57
HMGA1-204ENST00000401473 USP17L19D6RCP7 530 aa18.63■□□□□ 0.57
HMGA1-204ENST00000401473 USP17L20D6RJB6 530 aa18.63■□□□□ 0.57
HMGA1-204ENST00000401473 CYP2C8P10632 490 aa18.63■□□□□ 0.57
HMGA1-204ENST00000401473 PDIA3P30101 505 aaKnown RBP18.63■□□□□ 0.57
HMGA1-204ENST00000401473 USP17L24Q0WX57 530 aa18.63■□□□□ 0.57
HMGA1-204ENST00000401473 CPVLQ9H3G5 476 aa18.63■□□□□ 0.57
HMGA1-204ENST00000401473 GPCPD1Q9NPB8 672 aa18.63■□□□□ 0.57
HMGA1-204ENST00000401473 PALM3A6NDB9 673 aaPredicted RBP18.62■□□□□ 0.57
HMGA1-204ENST00000401473 TMEM232C9JQI7 657 aa18.62■□□□□ 0.57
HMGA1-204ENST00000401473 SLC16A2P36021 539 aa18.62■□□□□ 0.57
HMGA1-204ENST00000401473 NOL8Q76FK4 1167 aaKnown RBP18.62■□□□□ 0.57
HMGA1-204ENST00000401473 MICU3Q86XE3 530 aa18.62■□□□□ 0.57
HMGA1-204ENST00000401473 FANCBQ8NB91 859 aa18.62■□□□□ 0.57
HMGA1-204ENST00000401473 P2RX7Q99572 595 aaKnown RBP18.62■□□□□ 0.57
HMGA1-204ENST00000401473 TANGO6Q9C0B7 1094 aa18.62■□□□□ 0.57
HMGA1-204ENST00000401473 FAM217BQ9NTX9 383 aaPredicted RBP18.62■□□□□ 0.57
HMGA1-204ENST00000401473 PARP14Q460N5 1801 aa18.61■□□□□ 0.57
HMGA1-204ENST00000401473 ZBTB43O43298 467 aa18.61■□□□□ 0.57
HMGA1-204ENST00000401473 DDAH1O94760 285 aa18.61■□□□□ 0.57
HMGA1-204ENST00000401473 NBPF11Q86T75 865 aa18.61■□□□□ 0.57
HMGA1-204ENST00000401473 UBA5Q9GZZ9 404 aa18.61■□□□□ 0.57
HMGA1-204ENST00000401473 SLC45A1Q9Y2W3 748 aa18.61■□□□□ 0.57
HMGA1-204ENST00000401473 SMCHD1A6NHR9 2005 aa18.61■□□□□ 0.57
HMGA1-204ENST00000401473 FLOT1O75955 427 aa18.6■□□□□ 0.57
HMGA1-204ENST00000401473 PARP1P09874 1014 aaKnown RBP18.6■□□□□ 0.57
HMGA1-204ENST00000401473 COG2Q14746 738 aa18.6■□□□□ 0.57
HMGA1-204ENST00000401473 GRM4Q14833 912 aa18.6■□□□□ 0.57
HMGA1-204ENST00000401473 CCDC96Q2M329 555 aa18.6■□□□□ 0.57
HMGA1-204ENST00000401473 SLC35G1Q2M3R5 365 aa18.6■□□□□ 0.57
HMGA1-204ENST00000401473 MAP3K14Q99558 947 aa18.6■□□□□ 0.57
HMGA1-204ENST00000401473 TSKSQ9UJT2 592 aa18.6■□□□□ 0.57
HMGA1-204ENST00000401473 NAP1L2Q9ULW6 460 aaPredicted RBP18.6■□□□□ 0.57
HMGA1-204ENST00000401473 PEX10O60683 326 aa18.6■□□□□ 0.57
HMGA1-204ENST00000401473 TBC1D8O95759 1140 aa18.6■□□□□ 0.57
HMGA1-204ENST00000401473 CDC27P30260 824 aa18.6■□□□□ 0.57
HMGA1-204ENST00000401473 ADD1P35611 737 aaKnown RBP18.6■□□□□ 0.57
HMGA1-204ENST00000401473 CRHR2Q13324 411 aa18.6■□□□□ 0.57
HMGA1-204ENST00000401473 ANKRD1Q15327 319 aa18.6■□□□□ 0.57
HMGA1-204ENST00000401473 GPATCH4Q5T3I0 446 aaKnown RBP18.6■□□□□ 0.57
HMGA1-204ENST00000401473 SYNE3Q6ZMZ3 975 aa18.6■□□□□ 0.57
HMGA1-204ENST00000401473 CMTR1Q8N1G2 835 aaKnown RBP18.6■□□□□ 0.57
HMGA1-204ENST00000401473 ZNF274Q96GC6 653 aaPredicted RBP18.6■□□□□ 0.57
HMGA1-204ENST00000401473 ISY1Q9ULR0 285 aaKnown RBP18.6■□□□□ 0.57
HMGA1-204ENST00000401473 KLRF2D3W0D1 207 aa18.59■□□□□ 0.57
HMGA1-204ENST00000401473 LARGE1O95461 756 aa18.59■□□□□ 0.57
HMGA1-204ENST00000401473 STAT2P52630 851 aa18.59■□□□□ 0.57
HMGA1-204ENST00000401473 CCT2P78371 535 aaKnown RBP18.59■□□□□ 0.57
HMGA1-204ENST00000401473 ME3Q16798 604 aa18.59■□□□□ 0.57
HMGA1-204ENST00000401473 ASPRV1Q53RT3 343 aa18.59■□□□□ 0.57
HMGA1-204ENST00000401473 OTUD7BQ6GQQ9 843 aa18.59■□□□□ 0.57
HMGA1-204ENST00000401473 SAMD1Q6SPF0 538 aaPredicted RBP18.59■□□□□ 0.57
HMGA1-204ENST00000401473 BTNL9Q6UXG8 535 aa18.59■□□□□ 0.57
HMGA1-204ENST00000401473 ZCCHC17Q9NP64 241 aaKnown RBP18.59■□□□□ 0.57
HMGA1-204ENST00000401473 FEM1BQ9UK73 627 aa18.59■□□□□ 0.57
HMGA1-204ENST00000401473 SPDYE16A6NNV3 312 aaPredicted RBP18.58■□□□□ 0.57
HMGA1-204ENST00000401473 GOLGA8BA8MQT2 603 aa18.58■□□□□ 0.57
HMGA1-204ENST00000401473 CA12O43570 354 aa18.58■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms