RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 AGPAT5Q9NUQ2 364 aa23.68■■□□□ 1.38
CTCF-202ENST00000401394 SMARCAL1Q9NZC9 954 aa23.68■■□□□ 1.38
CTCF-202ENST00000401394 UQCRFS1P1P0C7P4 283 aa23.67■■□□□ 1.38
CTCF-202ENST00000401394 KANK3Q6NY19 840 aa23.67■■□□□ 1.38
CTCF-202ENST00000401394 CNGA4Q8IV77 575 aa23.67■■□□□ 1.38
CTCF-202ENST00000401394 PDE8AO60658 829 aa23.67■■□□□ 1.38
CTCF-202ENST00000401394 USP5P45974 858 aa23.67■■□□□ 1.38
CTCF-202ENST00000401394 EVA1CP58658 441 aa23.67■■□□□ 1.38
CTCF-202ENST00000401394 TCP11X2Q5H9J9 407 aa23.67■■□□□ 1.38
CTCF-202ENST00000401394 SRBD1Q8N5C6 995 aaKnown RBP23.67■■□□□ 1.38
CTCF-202ENST00000401394 GPKOWQ92917 476 aaPredicted RBP eCLIP23.67■■□□□ 1.38
CTCF-202ENST00000401394 CEP131Q9UPN4 1083 aa23.67■■□□□ 1.38
CTCF-202ENST00000401394 E2F4Q16254 413 aa23.67■■□□□ 1.38
CTCF-202ENST00000401394 TTC19Q6DKK2 380 aaPredicted RBP23.67■■□□□ 1.38
CTCF-202ENST00000401394 ELOA2Q8IYF1 753 aaPredicted RBP23.67■■□□□ 1.38
CTCF-202ENST00000401394 DRC1Q96MC2 740 aa23.67■■□□□ 1.38
CTCF-202ENST00000401394 NACAP1Q9BZK3 213 aa23.67■■□□□ 1.38
CTCF-202ENST00000401394 EPN1Q9Y6I3 576 aaPredicted RBP23.67■■□□□ 1.38
CTCF-202ENST00000401394 PDE2AO00408 941 aaPredicted RBP23.66■■□□□ 1.38
CTCF-202ENST00000401394 HERVK_113P62684 666 aa23.66■■□□□ 1.38
CTCF-202ENST00000401394 EZH2Q15910 746 aaKnown RBP23.66■■□□□ 1.38
CTCF-202ENST00000401394 LRRC31Q6UY01 552 aa23.66■■□□□ 1.38
CTCF-202ENST00000401394 SMIM5Q71RC9 77 aa23.66■■□□□ 1.38
CTCF-202ENST00000401394 ZNF512BQ96KM6 892 aaPredicted RBP23.66■■□□□ 1.38
CTCF-202ENST00000401394 RASSF4Q9H2L5 321 aa23.66■■□□□ 1.38
CTCF-202ENST00000401394 SRCAPQ6ZRS2 3230 aa23.66■■□□□ 1.38
CTCF-202ENST00000401394 STARD3NLO95772 234 aa23.66■■□□□ 1.38
CTCF-202ENST00000401394 SLC5A1P13866 664 aa23.66■■□□□ 1.38
CTCF-202ENST00000401394 LRRC15Q8TF66 581 aa23.66■■□□□ 1.38
CTCF-202ENST00000401394 GSDMAQ96QA5 445 aa23.66■■□□□ 1.38
CTCF-202ENST00000401394 NDUFA10O95299 355 aa23.65■■□□□ 1.38
CTCF-202ENST00000401394 IFIT1BQ5T764 474 aaKnown RBP23.65■■□□□ 1.38
CTCF-202ENST00000401394 PDXDC2PQ6P474 469 aa23.65■■□□□ 1.38
CTCF-202ENST00000401394 WDR59Q6PJI9 974 aa23.65■■□□□ 1.38
CTCF-202ENST00000401394 DZIP3Q86Y13 1208 aaKnown RBP23.65■■□□□ 1.38
CTCF-202ENST00000401394 HNRNPLLQ8WVV9 542 aaKnown RBP23.65■■□□□ 1.38
CTCF-202ENST00000401394 HPS3Q969F9 1004 aa23.65■■□□□ 1.38
CTCF-202ENST00000401394 STRCP1A6NGW2 1772 aa23.65■■□□□ 1.38
CTCF-202ENST00000401394 SYF2O95926 243 aaKnown RBP23.65■■□□□ 1.38
CTCF-202ENST00000401394 PAK1Q13153 545 aa23.65■■□□□ 1.38
CTCF-202ENST00000401394 LEKR1Q6ZMV7 388 aa23.65■■□□□ 1.38
CTCF-202ENST00000401394 GNL3LQ9NVN8 582 aaKnown RBP23.65■■□□□ 1.38
CTCF-202ENST00000401394 DCCP43146 1447 aa23.65■■□□□ 1.38
CTCF-202ENST00000401394 MACROD2A1Z1Q3 448 aa23.64■■□□□ 1.38
CTCF-202ENST00000401394 RNF40O75150 1001 aa23.64■■□□□ 1.38
CTCF-202ENST00000401394 CYP2D6P10635 497 aa23.64■■□□□ 1.38
CTCF-202ENST00000401394 ZSCAN10Q96SZ4 725 aaPredicted RBP23.64■■□□□ 1.38
CTCF-202ENST00000401394 TTF2Q9UNY4 1162 aaKnown RBP23.64■■□□□ 1.38
CTCF-202ENST00000401394 NKX1-1Q15270 411 aaPredicted RBP23.64■■□□□ 1.37
CTCF-202ENST00000401394 CYP26C1Q6V0L0 522 aa23.64■■□□□ 1.37
CTCF-202ENST00000401394 KRT26Q7Z3Y9 468 aa23.64■■□□□ 1.37
CTCF-202ENST00000401394 TMTC1Q8IUR5 882 aa23.64■■□□□ 1.37
CTCF-202ENST00000401394 NAA15Q9BXJ9 866 aaKnown RBP23.64■■□□□ 1.37
CTCF-202ENST00000401394 EHD2Q9NZN4 543 aa23.64■■□□□ 1.37
CTCF-202ENST00000401394 CCDC196A0A1B0GTZ2 297 aa23.64■■□□□ 1.37
CTCF-202ENST00000401394 HDAC7Q8WUI4 952 aa23.64■■□□□ 1.37
CTCF-202ENST00000401394 TROAPQ12815 778 aa23.63■■□□□ 1.37
CTCF-202ENST00000401394 CCDC122Q5T0U0 273 aa23.63■■□□□ 1.37
CTCF-202ENST00000401394 ZNF384Q8TF68 577 aa23.63■■□□□ 1.37
CTCF-202ENST00000401394 TNFRSF25Q93038 417 aa23.63■■□□□ 1.37
CTCF-202ENST00000401394 RNF26Q9BY78 433 aaPredicted RBP23.63■■□□□ 1.37
CTCF-202ENST00000401394 FAM205AQ6ZU69 1335 aa23.63■■□□□ 1.37
CTCF-202ENST00000401394 B4DLN1 442 aa23.63■■□□□ 1.37
CTCF-202ENST00000401394 ERLIN1O75477 346 aa23.63■■□□□ 1.37
CTCF-202ENST00000401394 PLEKP08567 350 aaPredicted RBP23.63■■□□□ 1.37
CTCF-202ENST00000401394 CYP19A1P11511 503 aaPredicted RBP23.63■■□□□ 1.37
CTCF-202ENST00000401394 LRP6O75581 1613 aa23.63■■□□□ 1.37
CTCF-202ENST00000401394 PARP1P09874 1014 aaKnown RBP23.62■■□□□ 1.37
CTCF-202ENST00000401394 C2orf54Q08AI8 447 aa23.62■■□□□ 1.37
CTCF-202ENST00000401394 CTAGE1Q96RT6 745 aa23.62■■□□□ 1.37
CTCF-202ENST00000401394 LIMA1Q9UHB6 759 aaKnown RBP23.62■■□□□ 1.37
CTCF-202ENST00000401394 CDHR2Q9BYE9 1310 aa23.62■■□□□ 1.37
CTCF-202ENST00000401394 MATR3P43243 847 aaKnown RBP eCLIP23.62■■□□□ 1.37
CTCF-202ENST00000401394 NLRP5P59047 1200 aa23.62■■□□□ 1.37
CTCF-202ENST00000401394 RPN1P04843 607 aaKnown RBP23.61■■□□□ 1.37
CTCF-202ENST00000401394 SLC51AQ86UW1 340 aa23.61■■□□□ 1.37
CTCF-202ENST00000401394 CPVLQ9H3G5 476 aa23.61■■□□□ 1.37
CTCF-202ENST00000401394 USP17L12C9JPN9 530 aa23.61■■□□□ 1.37
CTCF-202ENST00000401394 USP17L21D6R901 530 aa23.61■■□□□ 1.37
CTCF-202ENST00000401394 HSPA2P54652 639 aa23.61■■□□□ 1.37
CTCF-202ENST00000401394 HSP90B2PQ58FF3 399 aa23.61■■□□□ 1.37
CTCF-202ENST00000401394 DNAJC21Q5F1R6 531 aaKnown RBP23.61■■□□□ 1.37
CTCF-202ENST00000401394 CADPS2Q86UW7 1296 aa23.61■■□□□ 1.37
CTCF-202ENST00000401394 ESR2Q92731 530 aa23.61■■□□□ 1.37
CTCF-202ENST00000401394 MYH2Q9UKX2 1941 aa23.61■■□□□ 1.37
CTCF-202ENST00000401394 SLIT2O94813 1529 aa23.61■■□□□ 1.37
CTCF-202ENST00000401394 RASSF8Q8NHQ8 419 aa23.61■■□□□ 1.37
CTCF-202ENST00000401394 CXCR5P32302 372 aa23.6■■□□□ 1.37
CTCF-202ENST00000401394 GGCXP38435 758 aa23.6■■□□□ 1.37
CTCF-202ENST00000401394 ATP2C1P98194 919 aaPredicted RBP23.6■■□□□ 1.37
CTCF-202ENST00000401394 IQUBQ8NA54 791 aa23.6■■□□□ 1.37
CTCF-202ENST00000401394 TNS2Q63HR2 1409 aa23.6■■□□□ 1.37
CTCF-202ENST00000401394 MAGEB6P1A0A0J9YX57 407 aa23.6■■□□□ 1.37
CTCF-202ENST00000401394 KLRK1P26718 216 aa23.6■■□□□ 1.37
CTCF-202ENST00000401394 TYW1BQ6NUM6 668 aa23.6■■□□□ 1.37
CTCF-202ENST00000401394 TMEM60Q9H2L4 133 aa23.6■■□□□ 1.37
CTCF-202ENST00000401394 RASSF10A6NK89 507 aa23.59■■□□□ 1.37
CTCF-202ENST00000401394 SLC7A5Q01650 507 aa23.59■■□□□ 1.37
CTCF-202ENST00000401394 CHRNDQ07001 517 aa23.59■■□□□ 1.37
CTCF-202ENST00000401394 TRAPPC11Q7Z392 1133 aa23.59■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms