RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 SYNPO2Q9UMS6 1093 aa16.53■□□□□ 0.24
SKA1-202ENST00000398452 USP17L5A8MUK1 530 aa16.52■□□□□ 0.24
SKA1-202ENST00000398452 PDCP20941 246 aa16.52■□□□□ 0.24
SKA1-202ENST00000398452 NCOA5Q9HCD5 579 aaKnown RBP16.52■□□□□ 0.24
SKA1-202ENST00000398452 PRDM10Q9NQV6 1147 aa16.52■□□□□ 0.24
SKA1-202ENST00000398452 SIPA1L1O43166 1804 aa16.52■□□□□ 0.23
SKA1-202ENST00000398452 PHF20L1A8MW92 1017 aa16.51■□□□□ 0.23
SKA1-202ENST00000398452 PDIA4P13667 645 aaKnown RBP16.51■□□□□ 0.23
SKA1-202ENST00000398452 SSRP1Q08945 709 aaKnown RBP16.51■□□□□ 0.23
SKA1-202ENST00000398452 TROAPQ12815 778 aa16.51■□□□□ 0.23
SKA1-202ENST00000398452 CCDC96Q2M329 555 aa16.51■□□□□ 0.23
SKA1-202ENST00000398452 CLEC10AQ8IUN9 316 aa16.51■□□□□ 0.23
SKA1-202ENST00000398452 WASF1Q92558 559 aa16.51■□□□□ 0.23
SKA1-202ENST00000398452 MKL1Q969V6 931 aa16.51■□□□□ 0.23
SKA1-202ENST00000398452 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.51■□□□□ 0.23
SKA1-202ENST00000398452 ZNF112Q9UJU3 913 aa16.51■□□□□ 0.23
SKA1-202ENST00000398452 HPS5Q9UPZ3 1129 aa16.51■□□□□ 0.23
SKA1-202ENST00000398452 PTPDC1A2A3K4 754 aa16.5■□□□□ 0.23
SKA1-202ENST00000398452 USP2O75604 605 aaPredicted RBP16.5■□□□□ 0.23
SKA1-202ENST00000398452 GJB2P29033 226 aa16.5■□□□□ 0.23
SKA1-202ENST00000398452 INPP5BP32019 993 aa16.5■□□□□ 0.23
SKA1-202ENST00000398452 SLC1A4P43007 532 aa16.5■□□□□ 0.23
SKA1-202ENST00000398452 NOVP48745 357 aa16.5■□□□□ 0.23
SKA1-202ENST00000398452 HUNKP57058 714 aa16.5■□□□□ 0.23
SKA1-202ENST00000398452 RRP1BQ14684 758 aaKnown RBP16.5■□□□□ 0.23
SKA1-202ENST00000398452 GRM4Q14833 912 aa16.5■□□□□ 0.23
SKA1-202ENST00000398452 ASPRV1Q53RT3 343 aa16.5■□□□□ 0.23
SKA1-202ENST00000398452 GPATCH4Q5T3I0 446 aaKnown RBP16.5■□□□□ 0.23
SKA1-202ENST00000398452 SLFN13Q68D06 897 aa16.5■□□□□ 0.23
SKA1-202ENST00000398452 ANKRD13AQ8IZ07 590 aa16.5■□□□□ 0.23
SKA1-202ENST00000398452 DCAF4Q8WV16 495 aa16.5■□□□□ 0.23
SKA1-202ENST00000398452 RBM27Q9P2N5 1060 aaKnown RBP16.5■□□□□ 0.23
SKA1-202ENST00000398452 C7P10643 843 aa16.49■□□□□ 0.23
SKA1-202ENST00000398452 GUCY1A2P33402 732 aa16.49■□□□□ 0.23
SKA1-202ENST00000398452 ADD1P35611 737 aaKnown RBP16.49■□□□□ 0.23
SKA1-202ENST00000398452 USP14P54578 494 aa16.49■□□□□ 0.23
SKA1-202ENST00000398452 IKQ13123 557 aaPredicted RBP16.49■□□□□ 0.23
SKA1-202ENST00000398452 NOL9Q5SY16 702 aaKnown RBP16.49■□□□□ 0.23
SKA1-202ENST00000398452 SLC39A7Q92504 469 aa16.49■□□□□ 0.23
SKA1-202ENST00000398452 DDX11Q96FC9 970 aa16.49■□□□□ 0.23
SKA1-202ENST00000398452 NID2Q14112 1375 aa16.49■□□□□ 0.23
SKA1-202ENST00000398452 IFNAR1P17181 557 aa16.48■□□□□ 0.23
SKA1-202ENST00000398452 XBP1P17861 261 aa16.48■□□□□ 0.23
SKA1-202ENST00000398452 CDC27P30260 824 aa16.48■□□□□ 0.23
SKA1-202ENST00000398452 FKBP1BP68106 108 aa16.48■□□□□ 0.23
SKA1-202ENST00000398452 C2orf69Q8N8R5 385 aa16.48■□□□□ 0.23
SKA1-202ENST00000398452 NSUN7Q8NE18 718 aaKnown RBP16.48■□□□□ 0.23
SKA1-202ENST00000398452 GMCL1P1Q8NEA9 526 aa16.48■□□□□ 0.23
SKA1-202ENST00000398452 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.48■□□□□ 0.23
SKA1-202ENST00000398452 ZKSCAN4Q969J2 545 aaPredicted RBP16.48■□□□□ 0.23
SKA1-202ENST00000398452 ZIC5Q96T25 663 aa16.48■□□□□ 0.23
SKA1-202ENST00000398452 SLC26A6Q9BXS9 759 aa16.48■□□□□ 0.23
SKA1-202ENST00000398452 CHMP5Q9NZZ3 219 aa16.48■□□□□ 0.23
SKA1-202ENST00000398452 ORC3Q9UBD5 711 aaPredicted RBP16.48■□□□□ 0.23
SKA1-202ENST00000398452 CIZ1Q9ULV3 898 aaPredicted RBP16.48■□□□□ 0.23
SKA1-202ENST00000398452 TMX2Q9Y320 296 aa16.48■□□□□ 0.23
SKA1-202ENST00000398452 USP17L10C9JJH3 530 aa16.47■□□□□ 0.23
SKA1-202ENST00000398452 F5H6K3 240 aa16.47■□□□□ 0.23
SKA1-202ENST00000398452 H3BQV1 296 aa16.47■□□□□ 0.23
SKA1-202ENST00000398452 POTEB2H3BUK9 544 aa16.47■□□□□ 0.23
SKA1-202ENST00000398452 MAP3K13O43283 966 aa16.47■□□□□ 0.23
SKA1-202ENST00000398452 PDHBP11177 359 aa16.47■□□□□ 0.23
SKA1-202ENST00000398452 NUBP1P53384 320 aa16.47■□□□□ 0.23
SKA1-202ENST00000398452 NUCB2P80303 420 aa16.47■□□□□ 0.23
SKA1-202ENST00000398452 KLRC3Q07444 240 aa16.47■□□□□ 0.23
SKA1-202ENST00000398452 TRIM29Q14134 588 aa16.47■□□□□ 0.23
SKA1-202ENST00000398452 SHROOM1Q2M3G4 852 aaPredicted RBP16.47■□□□□ 0.23
SKA1-202ENST00000398452 LARP1BQ659C4 914 aaKnown RBP16.47■□□□□ 0.23
SKA1-202ENST00000398452 TMTC3Q6ZXV5 915 aa16.47■□□□□ 0.23
SKA1-202ENST00000398452 CCDC82Q8N4S0 544 aa16.47■□□□□ 0.23
SKA1-202ENST00000398452 ZNF280CQ8ND82 737 aa16.47■□□□□ 0.23
SKA1-202ENST00000398452 GBA2Q9HCG7 927 aaPredicted RBP16.47■□□□□ 0.23
SKA1-202ENST00000398452 SEC63Q9UGP8 760 aaKnown RBP16.47■□□□□ 0.23
SKA1-202ENST00000398452 ZHX2Q9Y6X8 837 aa16.47■□□□□ 0.23
SKA1-202ENST00000398452 UNCXA6NJT0 531 aa16.46■□□□□ 0.23
SKA1-202ENST00000398452 KLRF2D3W0D1 207 aa16.46■□□□□ 0.23
SKA1-202ENST00000398452 JAK2O60674 1132 aa16.46■□□□□ 0.23
SKA1-202ENST00000398452 DEXIO95424 95 aa16.46■□□□□ 0.23
SKA1-202ENST00000398452 BMP3P12645 472 aa16.46■□□□□ 0.23
SKA1-202ENST00000398452 PTPRAP18433 802 aa16.46■□□□□ 0.23
SKA1-202ENST00000398452 MAP2K2P36507 400 aa16.46■□□□□ 0.23
SKA1-202ENST00000398452 JAG1P78504 1218 aa16.46■□□□□ 0.23
SKA1-202ENST00000398452 VGLL4Q14135 290 aa16.46■□□□□ 0.23
SKA1-202ENST00000398452 ZYXQ15942 572 aaKnown RBP16.46■□□□□ 0.23
SKA1-202ENST00000398452 MAP3K11Q16584 847 aa16.46■□□□□ 0.23
SKA1-202ENST00000398452 USP17L2Q6R6M4 530 aa16.46■□□□□ 0.23
SKA1-202ENST00000398452 SMARCC2Q8TAQ2 1214 aa16.46■□□□□ 0.23
SKA1-202ENST00000398452 LPAR1Q92633 364 aa16.46■□□□□ 0.23
SKA1-202ENST00000398452 GMCL1Q96IK5 515 aa16.46■□□□□ 0.23
SKA1-202ENST00000398452 RNF26Q9BY78 433 aaPredicted RBP16.46■□□□□ 0.23
SKA1-202ENST00000398452 VCPKMTQ9H867 229 aa16.46■□□□□ 0.23
SKA1-202ENST00000398452 GPCPD1Q9NPB8 672 aa16.46■□□□□ 0.23
SKA1-202ENST00000398452 TMOD4Q9NZQ9 345 aa16.46■□□□□ 0.23
SKA1-202ENST00000398452 FZD1Q9UP38 647 aa16.46■□□□□ 0.23
SKA1-202ENST00000398452 SSC5DA1L4H1 1573 aa16.46■□□□□ 0.23
SKA1-202ENST00000398452 FRMPD2Q68DX3 1309 aaPredicted RBP16.45■□□□□ 0.22
SKA1-202ENST00000398452 STK36Q9NRP7 1315 aa16.45■□□□□ 0.22
SKA1-202ENST00000398452 PALM3A6NDB9 673 aaPredicted RBP16.45■□□□□ 0.22
SKA1-202ENST00000398452 C19orf81C9J6K1 198 aa16.45■□□□□ 0.22
SKA1-202ENST00000398452 FMNL1O95466 1100 aaPredicted RBP16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms