RNA–Protein interactions for RNA: ENST00000397606.7

PTPRD-204, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

TSL 1 (best) BASIC

Gene PTPRD, Length 5,038 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-204ENST00000397606 SPC24Q8NBT2 197 aa9.35□□□□□ -0.91
PTPRD-204ENST00000397606 PIGSQ96S52 555 aa9.35□□□□□ -0.91
PTPRD-204ENST00000397606 PNMA3Q9UL41 463 aa9.35□□□□□ -0.91
PTPRD-204ENST00000397606 ZHX2Q9Y6X8 837 aa9.35□□□□□ -0.91
PTPRD-204ENST00000397606 A0A1B0GVL5 298 aa9.35□□□□□ -0.91
PTPRD-204ENST00000397606 USP17L10C9JJH3 530 aa9.35□□□□□ -0.91
PTPRD-204ENST00000397606 TRAPPC10P48553 1259 aa9.35□□□□□ -0.91
PTPRD-204ENST00000397606 TOB2Q14106 344 aaPredicted RBP9.35□□□□□ -0.91
PTPRD-204ENST00000397606 SGMS1Q86VZ5 419 aa9.35□□□□□ -0.91
PTPRD-204ENST00000397606 NCAPG2Q86XI2 1143 aa9.35□□□□□ -0.91
PTPRD-204ENST00000397606 INCENPQ9NQS7 918 aa9.35□□□□□ -0.91
PTPRD-204ENST00000397606 GPHNQ9NQX3 736 aaPredicted RBP9.35□□□□□ -0.91
PTPRD-204ENST00000397606 ZBTB21Q9ULJ3 1066 aa9.35□□□□□ -0.91
PTPRD-204ENST00000397606 LRP6O75581 1613 aa9.35□□□□□ -0.91
PTPRD-204ENST00000397606 NOP56O00567 594 aaKnown RBP9.34□□□□□ -0.91
PTPRD-204ENST00000397606 CCP110O43303 1012 aa9.34□□□□□ -0.91
PTPRD-204ENST00000397606 CD2BP2O95400 341 aaKnown RBP9.34□□□□□ -0.91
PTPRD-204ENST00000397606 LIG1P18858 919 aa9.34□□□□□ -0.91
PTPRD-204ENST00000397606 KCTD2Q14681 263 aa9.34□□□□□ -0.91
PTPRD-204ENST00000397606 KIF22Q14807 665 aa9.34□□□□□ -0.91
PTPRD-204ENST00000397606 TMTC3Q6ZXV5 915 aa9.34□□□□□ -0.91
PTPRD-204ENST00000397606 PNMA8AQ86V59 439 aaPredicted RBP9.34□□□□□ -0.91
PTPRD-204ENST00000397606 LY9Q9HBG7 655 aa9.34□□□□□ -0.91
PTPRD-204ENST00000397606 PCDHA4Q9UN74 947 aa9.34□□□□□ -0.91
PTPRD-204ENST00000397606 LRRC37A3O60309 1634 aa9.34□□□□□ -0.91
PTPRD-204ENST00000397606 COL16A1Q07092 1604 aaPredicted RBP9.34□□□□□ -0.91
PTPRD-204ENST00000397606 PNMA6FA0A0J9YX94 578 aa9.34□□□□□ -0.91
PTPRD-204ENST00000397606 FAM13AO94988 1023 aa9.34□□□□□ -0.91
PTPRD-204ENST00000397606 CHGBP05060 677 aa9.34□□□□□ -0.91
PTPRD-204ENST00000397606 EEF2P13639 858 aaKnown RBP9.34□□□□□ -0.91
PTPRD-204ENST00000397606 CXCL9Q07325 125 aa9.34□□□□□ -0.91
PTPRD-204ENST00000397606 INF2Q27J81 1249 aa9.34□□□□□ -0.91
PTPRD-204ENST00000397606 CCDC40Q4G0X9 1142 aa9.34□□□□□ -0.91
PTPRD-204ENST00000397606 ANGEL2Q5VTE6 544 aaKnown RBP9.34□□□□□ -0.91
PTPRD-204ENST00000397606 C9orf131Q5VYM1 1079 aa9.34□□□□□ -0.91
PTPRD-204ENST00000397606 TXLNBQ8N3L3 684 aa9.34□□□□□ -0.91
PTPRD-204ENST00000397606 VTI1AQ96AJ9 217 aa9.34□□□□□ -0.91
PTPRD-204ENST00000397606 DLG5Q8TDM6 1919 aa9.34□□□□□ -0.91
PTPRD-204ENST00000397606 CHMP2AO43633 222 aa9.34□□□□□ -0.91
PTPRD-204ENST00000397606 MTIF2P46199 727 aaKnown RBP9.34□□□□□ -0.91
PTPRD-204ENST00000397606 HSP90AA2PQ14568 343 aaPredicted RBP9.34□□□□□ -0.91
PTPRD-204ENST00000397606 ISM2Q6H9L7 571 aa9.34□□□□□ -0.91
PTPRD-204ENST00000397606 ZNF397Q8NF99 534 aaPredicted RBP9.34□□□□□ -0.91
PTPRD-204ENST00000397606 TRIM47Q96LD4 638 aa9.34□□□□□ -0.91
PTPRD-204ENST00000397606 DEF6Q9H4E7 631 aa9.34□□□□□ -0.91
PTPRD-204ENST00000397606 ABT1Q9ULW3 272 aaKnown RBP9.34□□□□□ -0.91
PTPRD-204ENST00000397606 AKR1B1P15121 316 aa9.34□□□□□ -0.91
PTPRD-204ENST00000397606 LRSAM1Q6UWE0 723 aa9.34□□□□□ -0.91
PTPRD-204ENST00000397606 SNX29Q8TEQ0 813 aa9.34□□□□□ -0.91
PTPRD-204ENST00000397606 GGA3Q9NZ52 723 aa9.34□□□□□ -0.91
PTPRD-204ENST00000397606 USP25Q9UHP3 1055 aa9.34□□□□□ -0.91
PTPRD-204ENST00000397606 CDC37Q16543 378 aaPredicted RBP9.33□□□□□ -0.92
PTPRD-204ENST00000397606 NCAPH2Q6IBW4 605 aa9.33□□□□□ -0.92
PTPRD-204ENST00000397606 RCSD1Q6JBY9 416 aa9.33□□□□□ -0.92
PTPRD-204ENST00000397606 C16orf86Q6ZW13 317 aa9.33□□□□□ -0.92
PTPRD-204ENST00000397606 FILIP1Q7Z7B0 1213 aa9.33□□□□□ -0.92
PTPRD-204ENST00000397606 BICD1Q96G01 975 aa9.33□□□□□ -0.92
PTPRD-204ENST00000397606 RTN4Q9NQC3 1192 aaKnown RBP9.33□□□□□ -0.92
PTPRD-204ENST00000397606 KCPQ6ZWJ8 1503 aa9.33□□□□□ -0.92
PTPRD-204ENST00000397606 TRIM21P19474 475 aaKnown RBP9.33□□□□□ -0.92
PTPRD-204ENST00000397606 SPAG1Q07617 926 aa9.33□□□□□ -0.92
PTPRD-204ENST00000397606 USP37Q86T82 979 aa9.33□□□□□ -0.92
PTPRD-204ENST00000397606 CCDC65Q8IXS2 484 aa9.33□□□□□ -0.92
PTPRD-204ENST00000397606 SLFN12Q8IYM2 578 aa9.33□□□□□ -0.92
PTPRD-204ENST00000397606 DNAI2Q9GZS0 605 aa9.33□□□□□ -0.92
PTPRD-204ENST00000397606 EPB41L4AQ9HCS5 686 aaPredicted RBP9.33□□□□□ -0.92
PTPRD-204ENST00000397606 F5H6K3 240 aa9.33□□□□□ -0.92
PTPRD-204ENST00000397606 GAS7O60861 476 aa9.33□□□□□ -0.92
PTPRD-204ENST00000397606 FKBP1AP62942 108 aaKnown RBP9.33□□□□□ -0.92
PTPRD-204ENST00000397606 KLRC3Q07444 240 aa9.33□□□□□ -0.92
PTPRD-204ENST00000397606 SPP2Q13103 211 aa9.33□□□□□ -0.92
PTPRD-204ENST00000397606 PLIN2Q99541 437 aa9.33□□□□□ -0.92
PTPRD-204ENST00000397606 HOXC10Q9NYD6 342 aa9.33□□□□□ -0.92
PTPRD-204ENST00000397606 FEM1BQ9UK73 627 aa9.33□□□□□ -0.92
PTPRD-204ENST00000397606 BRPF3Q9ULD4 1205 aa9.33□□□□□ -0.92
PTPRD-204ENST00000397606 RABGAP1Q9Y3P9 1069 aa9.33□□□□□ -0.92
PTPRD-204ENST00000397606 NMT2O60551 498 aa9.33□□□□□ -0.92
PTPRD-204ENST00000397606 LARGE1O95461 756 aa9.33□□□□□ -0.92
PTPRD-204ENST00000397606 PPP1R2P41236 205 aa9.33□□□□□ -0.92
PTPRD-204ENST00000397606 ARHGEF6Q15052 776 aa9.33□□□□□ -0.92
PTPRD-204ENST00000397606 SAMD7Q7Z3H4 446 aa9.33□□□□□ -0.92
PTPRD-204ENST00000397606 FHDC1Q9C0D6 1143 aaPredicted RBP9.33□□□□□ -0.92
PTPRD-204ENST00000397606 NT5C3AQ9H0P0 336 aa9.33□□□□□ -0.92
PTPRD-204ENST00000397606 AZI2Q9H6S1 392 aa9.33□□□□□ -0.92
PTPRD-204ENST00000397606 SH3GLB2Q9NR46 395 aa9.33□□□□□ -0.92
PTPRD-204ENST00000397606 ANAPC4Q9UJX5 808 aa9.33□□□□□ -0.92
PTPRD-204ENST00000397606 MMP1P03956 469 aa9.32□□□□□ -0.92
PTPRD-204ENST00000397606 GRM4Q14833 912 aa9.32□□□□□ -0.92
PTPRD-204ENST00000397606 STOX1Q6ZVD7 989 aa9.32□□□□□ -0.92
PTPRD-204ENST00000397606 USP28Q96RU2 1077 aa9.32□□□□□ -0.92
PTPRD-204ENST00000397606 RIOK1Q9BRS2 568 aaKnown RBP9.32□□□□□ -0.92
PTPRD-204ENST00000397606 DEFB129Q9H1M3 183 aa9.32□□□□□ -0.92
PTPRD-204ENST00000397606 ADD3Q9UEY8 706 aaKnown RBP9.32□□□□□ -0.92
PTPRD-204ENST00000397606 STK36Q9NRP7 1315 aa9.32□□□□□ -0.92
PTPRD-204ENST00000397606 TESPA1A2RU30 521 aaPredicted RBP9.32□□□□□ -0.92
PTPRD-204ENST00000397606 OR52Z1P0C646 297 aa9.32□□□□□ -0.92
PTPRD-204ENST00000397606 FDX1P10109 184 aa9.32□□□□□ -0.92
PTPRD-204ENST00000397606 GCFC2P16383 781 aaKnown RBP9.32□□□□□ -0.92
PTPRD-204ENST00000397606 EXOSC10Q01780 885 aaKnown RBP9.32□□□□□ -0.92
PTPRD-204ENST00000397606 PRR16Q569H4 304 aa9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms