RNA–Protein interactions for RNA: ENST00000394299.6

GPC3-202, Transcript of glypican 3, humanhuman

TSL 1 (best) BASIC

Gene GPC3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC3-202ENST00000394299 NRXN2Q9P2S2 1712 aa17.23■□□□□ 0.35
GPC3-202ENST00000394299 GOLGA6L6A8MZA4 724 aa17.23■□□□□ 0.35
GPC3-202ENST00000394299 LMOD1P29536 600 aaPredicted RBP17.23■□□□□ 0.35
GPC3-202ENST00000394299 R3HCC1Q9Y3T6 440 aaKnown RBP17.23■□□□□ 0.35
GPC3-202ENST00000394299 FRMPD2Q68DX3 1309 aaPredicted RBP17.22■□□□□ 0.35
GPC3-202ENST00000394299 FAM196BA6NMK8 535 aa17.22■□□□□ 0.35
GPC3-202ENST00000394299 ACTN4O43707 911 aaKnown RBP17.22■□□□□ 0.35
GPC3-202ENST00000394299 ATP1A3P13637 1013 aa17.22■□□□□ 0.35
GPC3-202ENST00000394299 CDC25AP30304 524 aa17.22■□□□□ 0.35
GPC3-202ENST00000394299 GABPAQ06546 454 aa17.22■□□□□ 0.35
GPC3-202ENST00000394299 TCP10Q12799 353 aa17.22■□□□□ 0.35
GPC3-202ENST00000394299 POSTNQ15063 836 aa17.22■□□□□ 0.35
GPC3-202ENST00000394299 SLC15A2Q16348 729 aa17.22■□□□□ 0.35
GPC3-202ENST00000394299 CCDC178Q5BJE1 867 aa17.22■□□□□ 0.35
GPC3-202ENST00000394299 LRRC47Q8N1G4 583 aaKnown RBP17.22■□□□□ 0.35
GPC3-202ENST00000394299 STAMQ92783 540 aa17.22■□□□□ 0.35
GPC3-202ENST00000394299 HSD3B7Q9H2F3 369 aa17.22■□□□□ 0.35
GPC3-202ENST00000394299 MYH1P12882 1939 aa17.22■□□□□ 0.35
GPC3-202ENST00000394299 AFMP43652 599 aa17.22■□□□□ 0.35
GPC3-202ENST00000394299 CACTINQ8WUQ7 758 aaKnown RBP17.22■□□□□ 0.35
GPC3-202ENST00000394299 PCDHA4Q9UN74 947 aa17.22■□□□□ 0.35
GPC3-202ENST00000394299 UTRNP46939 3433 aa17.21■□□□□ 0.35
GPC3-202ENST00000394299 ADAMTSL1Q8N6G6 1762 aa17.21■□□□□ 0.35
GPC3-202ENST00000394299 STXBP3O00186 592 aa17.21■□□□□ 0.35
GPC3-202ENST00000394299 PARP1P09874 1014 aaKnown RBP17.21■□□□□ 0.35
GPC3-202ENST00000394299 HMGB2P26583 209 aaKnown RBP17.21■□□□□ 0.35
GPC3-202ENST00000394299 CRKP46108 304 aa17.21■□□□□ 0.35
GPC3-202ENST00000394299 GNAQP50148 359 aa17.21■□□□□ 0.35
GPC3-202ENST00000394299 SHROOM1Q2M3G4 852 aaPredicted RBP17.21■□□□□ 0.35
GPC3-202ENST00000394299 HSP90AA4PQ58FG1 418 aa17.21■□□□□ 0.35
GPC3-202ENST00000394299 FILIP1Q7Z7B0 1213 aa17.21■□□□□ 0.35
GPC3-202ENST00000394299 KIAA1524Q8TCG1 905 aa17.21■□□□□ 0.35
GPC3-202ENST00000394299 MAN1B1Q9UKM7 699 aa17.21■□□□□ 0.35
GPC3-202ENST00000394299 PCDHA6Q9UN73 950 aa17.21■□□□□ 0.35
GPC3-202ENST00000394299 PCDHA8Q9Y5H6 950 aa17.21■□□□□ 0.35
GPC3-202ENST00000394299 PTPN21Q16825 1174 aa17.21■□□□□ 0.34
GPC3-202ENST00000394299 AOC3Q16853 763 aa17.21■□□□□ 0.34
GPC3-202ENST00000394299 ARHGAP30Q7Z6I6 1101 aaPredicted RBP17.21■□□□□ 0.34
GPC3-202ENST00000394299 TEKT1Q969V4 418 aa17.21■□□□□ 0.34
GPC3-202ENST00000394299 BPIFA3Q9BQP9 254 aa17.21■□□□□ 0.34
GPC3-202ENST00000394299 IFNKQ9P0W0 207 aa17.21■□□□□ 0.34
GPC3-202ENST00000394299 SUGT1Q9Y2Z0 365 aa17.21■□□□□ 0.34
GPC3-202ENST00000394299 M0R2N6 131 aa17.2■□□□□ 0.34
GPC3-202ENST00000394299 ECE2O60344 883 aa17.2■□□□□ 0.34
GPC3-202ENST00000394299 TOP1P11387 765 aaKnown RBP17.2■□□□□ 0.34
GPC3-202ENST00000394299 RBM5P52756 815 aaKnown RBP eCLIP17.2■□□□□ 0.34
GPC3-202ENST00000394299 ATP2C1P98194 919 aaPredicted RBP17.2■□□□□ 0.34
GPC3-202ENST00000394299 MRFAP1L1Q96HT8 127 aa17.2■□□□□ 0.34
GPC3-202ENST00000394299 PIGSQ96S52 555 aa17.2■□□□□ 0.34
GPC3-202ENST00000394299 XPO4Q9C0E2 1151 aaKnown RBP17.2■□□□□ 0.34
GPC3-202ENST00000394299 OSBPL5Q9H0X9 879 aaPredicted RBP17.2■□□□□ 0.34
GPC3-202ENST00000394299 MTMR4Q9NYA4 1195 aa17.2■□□□□ 0.34
GPC3-202ENST00000394299 INF2Q27J81 1249 aa17.2■□□□□ 0.34
GPC3-202ENST00000394299 PODNQ7Z5L7 613 aa17.2■□□□□ 0.34
GPC3-202ENST00000394299 CAMKK2Q96RR4 588 aa17.2■□□□□ 0.34
GPC3-202ENST00000394299 BARHL2Q9NY43 387 aa17.2■□□□□ 0.34
GPC3-202ENST00000394299 SERPINB13Q9UIV8 391 aa17.2■□□□□ 0.34
GPC3-202ENST00000394299 SLX4Q8IY92 1834 aa17.19■□□□□ 0.34
GPC3-202ENST00000394299 SMC2O95347 1197 aa17.19■□□□□ 0.34
GPC3-202ENST00000394299 SHMT1P34896 483 aa17.19■□□□□ 0.34
GPC3-202ENST00000394299 HHIPL2Q6UWX4 724 aa17.19■□□□□ 0.34
GPC3-202ENST00000394299 C4orf32Q8N8J7 132 aa17.19■□□□□ 0.34
GPC3-202ENST00000394299 CALML3P27482 149 aa17.18■□□□□ 0.34
GPC3-202ENST00000394299 SARSP49591 514 aaKnown RBP17.18■□□□□ 0.34
GPC3-202ENST00000394299 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.18■□□□□ 0.34
GPC3-202ENST00000394299 PDHBP11177 359 aa17.18■□□□□ 0.34
GPC3-202ENST00000394299 CDC25BP30305 580 aa17.18■□□□□ 0.34
GPC3-202ENST00000394299 ATP2B2Q01814 1243 aa17.18■□□□□ 0.34
GPC3-202ENST00000394299 DACT2Q5SW24 774 aa17.18■□□□□ 0.34
GPC3-202ENST00000394299 DPF2Q92785 391 aa17.18■□□□□ 0.34
GPC3-202ENST00000394299 FERMT2Q96AC1 680 aa17.18■□□□□ 0.34
GPC3-202ENST00000394299 TMEM60Q9H2L4 133 aa17.18■□□□□ 0.34
GPC3-202ENST00000394299 GPCPD1Q9NPB8 672 aa17.18■□□□□ 0.34
GPC3-202ENST00000394299 SH3GLB2Q9NR46 395 aa17.18■□□□□ 0.34
GPC3-202ENST00000394299 FANCLQ9NW38 375 aa17.18■□□□□ 0.34
GPC3-202ENST00000394299 DDTLA6NHG4 134 aaPredicted RBP17.17■□□□□ 0.34
GPC3-202ENST00000394299 MPHOSPH10O00566 681 aaKnown RBP17.17■□□□□ 0.34
GPC3-202ENST00000394299 C21orf2O43822 256 aa17.17■□□□□ 0.34
GPC3-202ENST00000394299 NOVP48745 357 aa17.17■□□□□ 0.34
GPC3-202ENST00000394299 NT5C2P49902 561 aa17.17■□□□□ 0.34
GPC3-202ENST00000394299 NAPAP54920 295 aa17.17■□□□□ 0.34
GPC3-202ENST00000394299 FMR1Q06787 632 aaKnown RBP eCLIP17.17■□□□□ 0.34
GPC3-202ENST00000394299 DNTTIP2Q5QJE6 756 aaKnown RBP17.17■□□□□ 0.34
GPC3-202ENST00000394299 STYK1Q6J9G0 422 aa17.17■□□□□ 0.34
GPC3-202ENST00000394299 C7orf43Q8WVR3 580 aa17.17■□□□□ 0.34
GPC3-202ENST00000394299 SMARCE1Q969G3 411 aa17.17■□□□□ 0.34
GPC3-202ENST00000394299 PAGE5Q96GU1 130 aa17.17■□□□□ 0.34
GPC3-202ENST00000394299 DNAJC18Q9H819 358 aa17.17■□□□□ 0.34
GPC3-202ENST00000394299 CCDC194A0A1B0GVG4 234 aa17.17■□□□□ 0.34
GPC3-202ENST00000394299 TPM3P06753 285 aa17.17■□□□□ 0.34
GPC3-202ENST00000394299 TRMT44Q8IYL2 757 aaKnown RBP17.17■□□□□ 0.34
GPC3-202ENST00000394299 MED15Q96RN5 788 aa17.17■□□□□ 0.34
GPC3-202ENST00000394299 SPZ1Q9BXG8 430 aa17.17■□□□□ 0.34
GPC3-202ENST00000394299 SMCO2A6NFE2 343 aa17.16■□□□□ 0.34
GPC3-202ENST00000394299 PP2D1A8MPX8 630 aa17.16■□□□□ 0.34
GPC3-202ENST00000394299 SMTNL1A8MU46 457 aa17.16■□□□□ 0.34
GPC3-202ENST00000394299 TTBK2Q6IQ55 1244 aa17.16■□□□□ 0.34
GPC3-202ENST00000394299 COA7Q96BR5 231 aa17.16■□□□□ 0.34
GPC3-202ENST00000394299 SCN9AQ15858 1988 aa17.16■□□□□ 0.34
GPC3-202ENST00000394299 IGKV6D-41A0A0C4DH26 115 aa17.16■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms