RNA–Protein interactions for RNA: ENST00000389805.8

SQSTM1-202, Transcript of sequestosome 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SQSTM1, Length 2,986 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-202ENST00000389805 LRRIQ3A6PVS8 624 aaPredicted RBP20■□□□□ 0.79
SQSTM1-202ENST00000389805 GRAMD1CQ8IYS0 662 aa20■□□□□ 0.79
SQSTM1-202ENST00000389805 ZSCAN10Q96SZ4 725 aaPredicted RBP20■□□□□ 0.79
SQSTM1-202ENST00000389805 SETDB2Q96T68 719 aa20■□□□□ 0.79
SQSTM1-202ENST00000389805 BAZ2AQ9UIF9 1905 aaKnown RBP20■□□□□ 0.79
SQSTM1-202ENST00000389805 BCORQ6W2J9 1755 aa20■□□□□ 0.79
SQSTM1-202ENST00000389805 CICQ96RK0 1608 aaPredicted RBP20■□□□□ 0.79
SQSTM1-202ENST00000389805 GNPATO15228 680 aa20■□□□□ 0.79
SQSTM1-202ENST00000389805 TEX33O43247 280 aa20■□□□□ 0.79
SQSTM1-202ENST00000389805 KIF5CO60282 957 aa20■□□□□ 0.79
SQSTM1-202ENST00000389805 HNRNPLLQ8WVV9 542 aaKnown RBP20■□□□□ 0.79
SQSTM1-202ENST00000389805 GDAP1L1Q96MZ0 367 aa20■□□□□ 0.79
SQSTM1-202ENST00000389805 V9GY48 417 aaPredicted RBP20■□□□□ 0.79
SQSTM1-202ENST00000389805 MYH2Q9UKX2 1941 aa20■□□□□ 0.79
SQSTM1-202ENST00000389805 CCDC196A0A1B0GTZ2 297 aa19.99■□□□□ 0.79
SQSTM1-202ENST00000389805 CYP2D6P10635 497 aa19.99■□□□□ 0.79
SQSTM1-202ENST00000389805 GUCY2CP25092 1073 aa19.99■□□□□ 0.79
SQSTM1-202ENST00000389805 FAM47AQ5JRC9 791 aa19.99■□□□□ 0.79
SQSTM1-202ENST00000389805 FBXO33Q7Z6M2 555 aa19.99■□□□□ 0.79
SQSTM1-202ENST00000389805 NSUN4Q96CB9 384 aaKnown RBP19.99■□□□□ 0.79
SQSTM1-202ENST00000389805 NLRP3Q96P20 1036 aa19.99■□□□□ 0.79
SQSTM1-202ENST00000389805 ANAPC4Q9UJX5 808 aa19.99■□□□□ 0.79
SQSTM1-202ENST00000389805 IFIT1BQ5T764 474 aaKnown RBP19.99■□□□□ 0.79
SQSTM1-202ENST00000389805 CEP112Q8N8E3 955 aa19.99■□□□□ 0.79
SQSTM1-202ENST00000389805 RAB21Q9UL25 225 aa19.99■□□□□ 0.79
SQSTM1-202ENST00000389805 POLR2DO15514 142 aaKnown RBP19.98■□□□□ 0.79
SQSTM1-202ENST00000389805 PKN1Q16512 942 aa19.98■□□□□ 0.79
SQSTM1-202ENST00000389805 SLC35F6Q8N357 371 aa19.98■□□□□ 0.79
SQSTM1-202ENST00000389805 RABEP2Q9H5N1 569 aa19.98■□□□□ 0.79
SQSTM1-202ENST00000389805 YY1AP1Q9H869 796 aa19.98■□□□□ 0.79
SQSTM1-202ENST00000389805 FBXO2Q9UK22 296 aaPredicted RBP19.98■□□□□ 0.79
SQSTM1-202ENST00000389805 ADGRG1Q9Y653 693 aa19.98■□□□□ 0.79
SQSTM1-202ENST00000389805 CORO7P57737 925 aa19.98■□□□□ 0.79
SQSTM1-202ENST00000389805 NOA1Q8NC60 698 aaKnown RBP19.98■□□□□ 0.79
SQSTM1-202ENST00000389805 FOXP1Q9H334 677 aaPredicted RBP19.98■□□□□ 0.79
SQSTM1-202ENST00000389805 TIAM2Q8IVF5 1701 aa19.98■□□□□ 0.79
SQSTM1-202ENST00000389805 WNT7AO00755 349 aa19.98■□□□□ 0.79
SQSTM1-202ENST00000389805 PRR29P0C7W0 189 aa19.98■□□□□ 0.79
SQSTM1-202ENST00000389805 RIN2Q8WYP3 895 aaPredicted RBP19.98■□□□□ 0.79
SQSTM1-202ENST00000389805 GEMIN8Q9NWZ8 242 aaKnown RBP19.98■□□□□ 0.79
SQSTM1-202ENST00000389805 RREB1Q92766 1687 aa19.97■□□□□ 0.79
SQSTM1-202ENST00000389805 CACNA1SQ13698 1873 aa19.97■□□□□ 0.79
SQSTM1-202ENST00000389805 FAM237AA0A1B0GTK4 181 aa19.97■□□□□ 0.79
SQSTM1-202ENST00000389805 HIBADHP31937 336 aaKnown RBP19.97■□□□□ 0.79
SQSTM1-202ENST00000389805 USP5P45974 858 aa19.97■□□□□ 0.79
SQSTM1-202ENST00000389805 SLC10A5Q5PT55 438 aa19.97■□□□□ 0.79
SQSTM1-202ENST00000389805 MICALL1Q8N3F8 863 aa19.97■□□□□ 0.79
SQSTM1-202ENST00000389805 PPM1EQ8WY54 764 aa19.97■□□□□ 0.79
SQSTM1-202ENST00000389805 NID2Q14112 1375 aa19.97■□□□□ 0.79
SQSTM1-202ENST00000389805 AKR1B15C9JRZ8 316 aaPredicted RBP19.97■□□□□ 0.79
SQSTM1-202ENST00000389805 MSANTD4Q8NCY6 345 aa19.97■□□□□ 0.79
SQSTM1-202ENST00000389805 ACRBPQ8NEB7 543 aa19.97■□□□□ 0.79
SQSTM1-202ENST00000389805 DEF6Q9H4E7 631 aa19.97■□□□□ 0.79
SQSTM1-202ENST00000389805 SERTAD1Q9UHV2 236 aa19.97■□□□□ 0.79
SQSTM1-202ENST00000389805 MAN1B1Q9UKM7 699 aa19.97■□□□□ 0.79
SQSTM1-202ENST00000389805 ZPR1O75312 459 aa19.96■□□□□ 0.79
SQSTM1-202ENST00000389805 VEGFAP15692 232 aaPredicted RBP19.96■□□□□ 0.79
SQSTM1-202ENST00000389805 PTPREP23469 700 aa19.96■□□□□ 0.79
SQSTM1-202ENST00000389805 AKAP17AQ02040 695 aaKnown RBP19.96■□□□□ 0.79
SQSTM1-202ENST00000389805 RBL2Q08999 1139 aa19.96■□□□□ 0.79
SQSTM1-202ENST00000389805 FUT2Q10981 343 aa19.96■□□□□ 0.79
SQSTM1-202ENST00000389805 RILPL1Q5EBL4 403 aa19.96■□□□□ 0.79
SQSTM1-202ENST00000389805 NARFQ9UHQ1 456 aa19.96■□□□□ 0.79
SQSTM1-202ENST00000389805 MDM2Q00987 491 aaPredicted RBP19.96■□□□□ 0.79
SQSTM1-202ENST00000389805 TROAPQ12815 778 aa19.96■□□□□ 0.79
SQSTM1-202ENST00000389805 KLHL10Q6JEL2 608 aa19.96■□□□□ 0.79
SQSTM1-202ENST00000389805 FAM71BQ8TC56 605 aa19.96■□□□□ 0.79
SQSTM1-202ENST00000389805 CTAGE9A4FU28 777 aa19.95■□□□□ 0.78
SQSTM1-202ENST00000389805 RNF40O75150 1001 aa19.95■□□□□ 0.78
SQSTM1-202ENST00000389805 STX17P56962 302 aa19.95■□□□□ 0.78
SQSTM1-202ENST00000389805 NCAPH2Q6IBW4 605 aa19.95■□□□□ 0.78
SQSTM1-202ENST00000389805 BRIP1Q9BX63 1249 aa19.95■□□□□ 0.78
SQSTM1-202ENST00000389805 MKRN1Q9UHC7 482 aaKnown RBP19.95■□□□□ 0.78
SQSTM1-202ENST00000389805 CTAGE15A4D2H0 777 aa19.95■□□□□ 0.78
SQSTM1-202ENST00000389805 CTAGE8P0CG41 777 aa19.95■□□□□ 0.78
SQSTM1-202ENST00000389805 CATIPQ7Z7H3 387 aa19.95■□□□□ 0.78
SQSTM1-202ENST00000389805 CTAGE6Q86UF2 777 aa19.95■□□□□ 0.78
SQSTM1-202ENST00000389805 CTAGE4Q8IX94 777 aa19.95■□□□□ 0.78
SQSTM1-202ENST00000389805 MED15Q96RN5 788 aa19.95■□□□□ 0.78
SQSTM1-202ENST00000389805 CSRNP2Q9H175 543 aa19.95■□□□□ 0.78
SQSTM1-202ENST00000389805 DCP1AQ9NPI6 582 aaPredicted RBP19.95■□□□□ 0.78
SQSTM1-202ENST00000389805 EP400Q96L91 3159 aa19.95■□□□□ 0.78
SQSTM1-202ENST00000389805 RPS6KA5O75582 802 aa19.95■□□□□ 0.78
SQSTM1-202ENST00000389805 IQCA1Q86XH1 822 aa19.95■□□□□ 0.78
SQSTM1-202ENST00000389805 ARHGEF1Q92888 912 aaKnown RBP19.95■□□□□ 0.78
SQSTM1-202ENST00000389805 RNF26Q9BY78 433 aaPredicted RBP19.95■□□□□ 0.78
SQSTM1-202ENST00000389805 POTEB2H3BUK9 544 aa19.94■□□□□ 0.78
SQSTM1-202ENST00000389805 RPS6KA4O75676 772 aa19.94■□□□□ 0.78
SQSTM1-202ENST00000389805 IGSF22Q8N9C0 903 aa19.94■□□□□ 0.78
SQSTM1-202ENST00000389805 GPR101Q96P66 508 aaPredicted RBP19.94■□□□□ 0.78
SQSTM1-202ENST00000389805 CNTNAP4Q9C0A0 1308 aa19.94■□□□□ 0.78
SQSTM1-202ENST00000389805 PPFIBP1Q86W92 1011 aa19.94■□□□□ 0.78
SQSTM1-202ENST00000389805 MTA3Q9BTC8 594 aa19.94■□□□□ 0.78
SQSTM1-202ENST00000389805 ADAMTS3O15072 1205 aa19.93■□□□□ 0.78
SQSTM1-202ENST00000389805 COBLO75128 1261 aa19.93■□□□□ 0.78
SQSTM1-202ENST00000389805 ZNF18P17022 549 aa19.93■□□□□ 0.78
SQSTM1-202ENST00000389805 TM4SF1P30408 202 aa19.93■□□□□ 0.78
SQSTM1-202ENST00000389805 TPTE2Q6XPS3 522 aa19.93■□□□□ 0.78
SQSTM1-202ENST00000389805 EPSTI1Q96J88 318 aa19.93■□□□□ 0.78
SQSTM1-202ENST00000389805 HINFPQ9BQA5 517 aa19.93■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms