RNA–Protein interactions for RNA: ENST00000375340.10

SMC1A-202, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 1 (best) BASIC

Gene SMC1A, Length 9,930 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-202ENST00000375340 DDX39AO00148 427 aaKnown RBP7.29□□□□□ -1.24
SMC1A-202ENST00000375340 MCAMP43121 646 aa7.29□□□□□ -1.24
SMC1A-202ENST00000375340 CERS3Q8IU89 383 aa7.29□□□□□ -1.24
SMC1A-202ENST00000375340 IFT20Q8IY31 132 aa7.29□□□□□ -1.24
SMC1A-202ENST00000375340 ANKS4BQ8N8V4 417 aa7.29□□□□□ -1.24
SMC1A-202ENST00000375340 SNX29Q8TEQ0 813 aa7.29□□□□□ -1.24
SMC1A-202ENST00000375340 PAGE5Q96GU1 130 aa7.29□□□□□ -1.24
SMC1A-202ENST00000375340 ANKRD2Q9GZV1 360 aa7.29□□□□□ -1.24
SMC1A-202ENST00000375340 ADCY7P51828 1080 aa7.29□□□□□ -1.24
SMC1A-202ENST00000375340 CHRNDQ07001 517 aa7.29□□□□□ -1.24
SMC1A-202ENST00000375340 TUBB2AQ13885 445 aa7.29□□□□□ -1.24
SMC1A-202ENST00000375340 SPATA1Q5VX52 437 aa7.29□□□□□ -1.24
SMC1A-202ENST00000375340 C8orf37Q96NL8 207 aa7.29□□□□□ -1.24
SMC1A-202ENST00000375340 TUBB2BQ9BVA1 445 aa7.29□□□□□ -1.24
SMC1A-202ENST00000375340 ASAP1Q9ULH1 1129 aa7.29□□□□□ -1.24
SMC1A-202ENST00000375340 SYNE4Q8N205 404 aa7.29□□□□□ -1.24
SMC1A-202ENST00000375340 OXER1Q8TDS5 423 aa7.29□□□□□ -1.24
SMC1A-202ENST00000375340 NSRP1Q9H0G5 558 aaKnown RBP7.29□□□□□ -1.24
SMC1A-202ENST00000375340 MROH7-TTC4A0A0A0MT08 1334 aa7.29□□□□□ -1.24
SMC1A-202ENST00000375340 CD163L1Q9NR16 1453 aa7.29□□□□□ -1.24
SMC1A-202ENST00000375340 CDC25AP30304 524 aa7.29□□□□□ -1.24
SMC1A-202ENST00000375340 CXCR5P32302 372 aa7.29□□□□□ -1.24
SMC1A-202ENST00000375340 TFAP4Q01664 338 aa7.29□□□□□ -1.24
SMC1A-202ENST00000375340 CCDC91Q7Z6B0 441 aa7.29□□□□□ -1.24
SMC1A-202ENST00000375340 BLIDQ8IZY5 108 aa7.29□□□□□ -1.24
SMC1A-202ENST00000375340 MROH1Q8NDA8 1641 aa7.29□□□□□ -1.24
SMC1A-202ENST00000375340 NDUFAB1O14561 156 aa7.29□□□□□ -1.24
SMC1A-202ENST00000375340 PNMA6AP0CW24 399 aaPredicted RBP7.29□□□□□ -1.24
SMC1A-202ENST00000375340 EPB41P11171 864 aaKnown RBP7.29□□□□□ -1.24
SMC1A-202ENST00000375340 CEP104O60308 925 aa7.28□□□□□ -1.24
SMC1A-202ENST00000375340 MOCS3O95396 460 aa7.28□□□□□ -1.24
SMC1A-202ENST00000375340 SRGAP2O75044 1071 aa7.28□□□□□ -1.24
SMC1A-202ENST00000375340 INPP5BP32019 993 aa7.28□□□□□ -1.24
SMC1A-202ENST00000375340 CETN1Q12798 172 aa7.28□□□□□ -1.24
SMC1A-202ENST00000375340 ARHGAP31Q2M1Z3 1444 aa7.28□□□□□ -1.24
SMC1A-202ENST00000375340 SPDYE3A6NKU9 549 aa7.28□□□□□ -1.24
SMC1A-202ENST00000375340 ERVV-2B6SEH9 535 aa7.28□□□□□ -1.24
SMC1A-202ENST00000375340 USP17L12C9JPN9 530 aa7.28□□□□□ -1.24
SMC1A-202ENST00000375340 USP17L21D6R901 530 aa7.28□□□□□ -1.24
SMC1A-202ENST00000375340 KRT5P13647 590 aa7.28□□□□□ -1.24
SMC1A-202ENST00000375340 CALRP27797 417 aaKnown RBP7.28□□□□□ -1.24
SMC1A-202ENST00000375340 TUBB4BP68371 445 aa7.28□□□□□ -1.24
SMC1A-202ENST00000375340 ADAT2Q7Z6V5 191 aaKnown RBP7.28□□□□□ -1.24
SMC1A-202ENST00000375340 LMBR1Q8WVP7 490 aa7.28□□□□□ -1.24
SMC1A-202ENST00000375340 IKBKBO14920 756 aa7.28□□□□□ -1.24
SMC1A-202ENST00000375340 LONRF2Q1L5Z9 754 aa7.28□□□□□ -1.24
SMC1A-202ENST00000375340 SRGAP1Q7Z6B7 1085 aa7.28□□□□□ -1.24
SMC1A-202ENST00000375340 ZNF710Q8N1W2 664 aa7.28□□□□□ -1.24
SMC1A-202ENST00000375340 UTP11Q9Y3A2 253 aaKnown RBP7.28□□□□□ -1.24
SMC1A-202ENST00000375340 KCTD16Q68DU8 428 aa7.28□□□□□ -1.24
SMC1A-202ENST00000375340 STXBP4Q6ZWJ1 553 aa7.28□□□□□ -1.24
SMC1A-202ENST00000375340 KSR1Q8IVT5 923 aa7.28□□□□□ -1.24
SMC1A-202ENST00000375340 PLEKHA8P1O95397 391 aa7.28□□□□□ -1.24
SMC1A-202ENST00000375340 FMR1NBQ8N0W7 255 aaPredicted RBP7.28□□□□□ -1.24
SMC1A-202ENST00000375340 MGARPQ8TDB4 240 aa7.28□□□□□ -1.24
SMC1A-202ENST00000375340 NUP58Q9BVL2 599 aa7.28□□□□□ -1.24
SMC1A-202ENST00000375340 PPANQ9NQ55 473 aaKnown RBP7.28□□□□□ -1.24
SMC1A-202ENST00000375340 SMCO2A6NFE2 343 aa7.28□□□□□ -1.24
SMC1A-202ENST00000375340 PCCAP05165 728 aaPredicted RBP7.28□□□□□ -1.24
SMC1A-202ENST00000375340 SCG2P13521 617 aa7.28□□□□□ -1.24
SMC1A-202ENST00000375340 CCDC65Q8IXS2 484 aa7.28□□□□□ -1.24
SMC1A-202ENST00000375340 LRWD1Q9UFC0 647 aa7.28□□□□□ -1.24
SMC1A-202ENST00000375340 MAP3K15Q6ZN16 1313 aa7.28□□□□□ -1.24
SMC1A-202ENST00000375340 GTPBP6O43824 516 aaPredicted RBP7.27□□□□□ -1.24
SMC1A-202ENST00000375340 VIMP08670 466 aaKnown RBP7.27□□□□□ -1.24
SMC1A-202ENST00000375340 CDC27P30260 824 aa7.27□□□□□ -1.24
SMC1A-202ENST00000375340 RASSF7Q02833 373 aa7.27□□□□□ -1.24
SMC1A-202ENST00000375340 NONOQ15233 471 aaKnown RBP eCLIP7.27□□□□□ -1.24
SMC1A-202ENST00000375340 CALUO43852 315 aaPredicted RBP7.27□□□□□ -1.25
SMC1A-202ENST00000375340 STX10O60499 249 aa7.27□□□□□ -1.25
SMC1A-202ENST00000375340 LIG3P49916 1009 aa7.27□□□□□ -1.25
SMC1A-202ENST00000375340 SLC7A5Q01650 507 aa7.27□□□□□ -1.25
SMC1A-202ENST00000375340 GOLGA5Q8TBA6 731 aa7.27□□□□□ -1.25
SMC1A-202ENST00000375340 SIGLEC1Q9BZZ2 1709 aa7.27□□□□□ -1.25
SMC1A-202ENST00000375340 SARM1Q6SZW1 724 aa7.27□□□□□ -1.25
SMC1A-202ENST00000375340 ARHGEF25Q86VW2 580 aa7.27□□□□□ -1.25
SMC1A-202ENST00000375340 CNOT6LQ96LI5 555 aaKnown RBP7.27□□□□□ -1.25
SMC1A-202ENST00000375340 AXIN2Q9Y2T1 843 aa7.27□□□□□ -1.25
SMC1A-202ENST00000375340 RRP15Q9Y3B9 282 aaKnown RBP7.27□□□□□ -1.25
SMC1A-202ENST00000375340 DIP2BQ9P265 1576 aa7.27□□□□□ -1.25
SMC1A-202ENST00000375340 ANKARQ7Z5J8 1434 aa7.27□□□□□ -1.25
SMC1A-202ENST00000375340 RNF40O75150 1001 aa7.27□□□□□ -1.25
SMC1A-202ENST00000375340 SEL1L2Q5TEA6 688 aa7.27□□□□□ -1.25
SMC1A-202ENST00000375340 LRRC47Q8N1G4 583 aaKnown RBP7.27□□□□□ -1.25
SMC1A-202ENST00000375340 CCDC51Q96ER9 411 aa7.27□□□□□ -1.25
SMC1A-202ENST00000375340 ABCB6Q9NP58 842 aa7.27□□□□□ -1.25
SMC1A-202ENST00000375340 SP4Q02446 784 aa7.27□□□□□ -1.25
SMC1A-202ENST00000375340 SERPINA10Q9UK55 444 aa7.27□□□□□ -1.25
SMC1A-202ENST00000375340 GCNT3O95395 438 aa7.27□□□□□ -1.25
SMC1A-202ENST00000375340 DPH6Q7L8W6 267 aa7.27□□□□□ -1.25
SMC1A-202ENST00000375340 ZSWIM5Q9P217 1185 aa7.27□□□□□ -1.25
SMC1A-202ENST00000375340 DDX41Q9UJV9 622 aaKnown RBP7.27□□□□□ -1.25
SMC1A-202ENST00000375340 NMT2O60551 498 aa7.27□□□□□ -1.25
SMC1A-202ENST00000375340 CACNB1Q02641 598 aaPredicted RBP7.27□□□□□ -1.25
SMC1A-202ENST00000375340 FAM71BQ8TC56 605 aa7.27□□□□□ -1.25
SMC1A-202ENST00000375340 CAPS2Q9BXY5 557 aa7.27□□□□□ -1.25
SMC1A-202ENST00000375340 FOXP1Q9H334 677 aaPredicted RBP7.27□□□□□ -1.25
SMC1A-202ENST00000375340 UTP18Q9Y5J1 556 aaKnown RBP eCLIP7.27□□□□□ -1.255e-7■■□□□ 12.9
SMC1A-202ENST00000375340 ZBTB22O15209 634 aa7.26□□□□□ -1.25
SMC1A-202ENST00000375340 CCDC172P0C7W6 258 aa7.26□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 85.1 ms