RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 BLZF1Q9H2G9 400 aa23.84■■□□□ 1.41
UPF3A-202ENST00000375299 REXO2Q9Y3B8 237 aaKnown RBP23.84■■□□□ 1.41
UPF3A-202ENST00000375299 KCNJ18B7U540 433 aa23.84■■□□□ 1.41
UPF3A-202ENST00000375299 NDUFA10O95299 355 aa23.84■■□□□ 1.41
UPF3A-202ENST00000375299 AARSP49588 968 aaKnown RBP eCLIP23.84■■□□□ 1.41
UPF3A-202ENST00000375299 USP14P54578 494 aa23.84■■□□□ 1.41
UPF3A-202ENST00000375299 KCNJ12Q14500 433 aa23.84■■□□□ 1.41
UPF3A-202ENST00000375299 E2F4Q16254 413 aa23.84■■□□□ 1.41
UPF3A-202ENST00000375299 LRRC31Q6UY01 552 aa23.84■■□□□ 1.41
UPF3A-202ENST00000375299 HELBQ8NG08 1087 aaPredicted RBP23.84■■□□□ 1.41
UPF3A-202ENST00000375299 CTCFLQ8NI51 663 aaPredicted RBP23.84■■□□□ 1.41
UPF3A-202ENST00000375299 EPN1Q9Y6I3 576 aaPredicted RBP23.84■■□□□ 1.41
UPF3A-202ENST00000375299 PSMD14O00487 310 aa23.83■■□□□ 1.41
UPF3A-202ENST00000375299 SEC23AQ15436 765 aa23.83■■□□□ 1.41
UPF3A-202ENST00000375299 ZNF174Q15697 407 aa23.83■■□□□ 1.41
UPF3A-202ENST00000375299 CHP1Q99653 195 aa23.83■■□□□ 1.41
UPF3A-202ENST00000375299 GUCA1BQ9UMX6 200 aa23.83■■□□□ 1.41
UPF3A-202ENST00000375299 PLCH1Q4KWH8 1693 aa23.83■■□□□ 1.41
UPF3A-202ENST00000375299 PRDM1O75626 825 aa23.83■■□□□ 1.4
UPF3A-202ENST00000375299 MCM3P25205 808 aa23.83■■□□□ 1.4
UPF3A-202ENST00000375299 GOLGA6L1Q8N7Z2 621 aa23.83■■□□□ 1.4
UPF3A-202ENST00000375299 TNKSO95271 1327 aa23.82■■□□□ 1.4
UPF3A-202ENST00000375299 MROH5Q6ZUA9 1318 aa23.82■■□□□ 1.4
UPF3A-202ENST00000375299 PRPF3O43395 683 aaKnown RBP23.82■■□□□ 1.4
UPF3A-202ENST00000375299 RNF40O75150 1001 aa23.82■■□□□ 1.4
UPF3A-202ENST00000375299 SLC5A1P13866 664 aa23.82■■□□□ 1.4
UPF3A-202ENST00000375299 ATP2C1P98194 919 aaPredicted RBP23.82■■□□□ 1.4
UPF3A-202ENST00000375299 TTC38Q5R3I4 469 aa23.82■■□□□ 1.4
UPF3A-202ENST00000375299 NELFBQ8WX92 580 aa23.82■■□□□ 1.4
UPF3A-202ENST00000375299 HAUS4Q9H6D7 363 aa23.82■■□□□ 1.4
UPF3A-202ENST00000375299 TRIM10Q9UDY6 481 aa23.82■■□□□ 1.4
UPF3A-202ENST00000375299 GTPBP6O43824 516 aaPredicted RBP23.81■■□□□ 1.4
UPF3A-202ENST00000375299 PDE8AO60658 829 aa23.81■■□□□ 1.4
UPF3A-202ENST00000375299 SYF2O95926 243 aaKnown RBP23.81■■□□□ 1.4
UPF3A-202ENST00000375299 PPARAQ07869 468 aa23.81■■□□□ 1.4
UPF3A-202ENST00000375299 MAP9Q49MG5 647 aa23.81■■□□□ 1.4
UPF3A-202ENST00000375299 BRMS1Q9HCU9 246 aa23.81■■□□□ 1.4
UPF3A-202ENST00000375299 DISP2A7MBM2 1401 aa23.81■■□□□ 1.4
UPF3A-202ENST00000375299 PDXDC2PQ6P474 469 aa23.81■■□□□ 1.4
UPF3A-202ENST00000375299 UBXN1Q04323 297 aa23.8■■□□□ 1.4
UPF3A-202ENST00000375299 FUT2Q10981 343 aa23.8■■□□□ 1.4
UPF3A-202ENST00000375299 ZNF658Q5TYW1 1059 aaPredicted RBP23.8■■□□□ 1.4
UPF3A-202ENST00000375299 AFAP1L1Q8TED9 768 aa23.8■■□□□ 1.4
UPF3A-202ENST00000375299 TNFRSF25Q93038 417 aa23.8■■□□□ 1.4
UPF3A-202ENST00000375299 TRMT112Q9UI30 125 aaKnown RBP23.8■■□□□ 1.4
UPF3A-202ENST00000375299 TNKS1BP1Q9C0C2 1729 aaKnown RBP23.8■■□□□ 1.4
UPF3A-202ENST00000375299 PRPF6O94906 941 aaKnown RBP23.8■■□□□ 1.4
UPF3A-202ENST00000375299 MAGEA9P43362 315 aa23.8■■□□□ 1.4
UPF3A-202ENST00000375299 NOP2P46087 812 aaKnown RBP23.8■■□□□ 1.4
UPF3A-202ENST00000375299 PTGDRQ13258 359 aa23.8■■□□□ 1.4
UPF3A-202ENST00000375299 PYM1Q9BRP8 204 aaKnown RBP23.8■■□□□ 1.4
UPF3A-202ENST00000375299 hCG_1642624A0A1W2PR95 340 aa23.79■■□□□ 1.4
UPF3A-202ENST00000375299 ESR2Q92731 530 aa23.79■■□□□ 1.4
UPF3A-202ENST00000375299 HPCAL4Q9UM19 191 aa23.79■■□□□ 1.4
UPF3A-202ENST00000375299 ITGB4P16144 1822 aa23.79■■□□□ 1.4
UPF3A-202ENST00000375299 ENC1O14682 589 aa23.79■■□□□ 1.4
UPF3A-202ENST00000375299 MMS19Q96T76 1030 aa23.79■■□□□ 1.4
UPF3A-202ENST00000375299 MTRQ99707 1265 aa23.79■■□□□ 1.4
UPF3A-202ENST00000375299 RNF216Q9NWF9 866 aaPredicted RBP23.79■■□□□ 1.4
UPF3A-202ENST00000375299 RMND1Q9NWS8 449 aa23.79■■□□□ 1.4
UPF3A-202ENST00000375299 HDAC6Q9UBN7 1215 aa23.79■■□□□ 1.4
UPF3A-202ENST00000375299 SAR1BQ9Y6B6 198 aa23.79■■□□□ 1.4
UPF3A-202ENST00000375299 EIF3CLB5ME19 914 aaKnown RBP23.78■■□□□ 1.4
UPF3A-202ENST00000375299 ATP1A1P05023 1023 aaKnown RBP23.78■■□□□ 1.4
UPF3A-202ENST00000375299 CTR9Q6PD62 1173 aa23.78■■□□□ 1.4
UPF3A-202ENST00000375299 MIGA1Q8NAN2 632 aa23.78■■□□□ 1.4
UPF3A-202ENST00000375299 OR8K1Q8NGG5 319 aa23.78■■□□□ 1.4
UPF3A-202ENST00000375299 EIF3CQ99613 913 aaKnown RBP23.78■■□□□ 1.4
UPF3A-202ENST00000375299 V9GY48 417 aaPredicted RBP23.78■■□□□ 1.4
UPF3A-202ENST00000375299 COL22A1Q8NFW1 1626 aaPredicted RBP23.78■■□□□ 1.4
UPF3A-202ENST00000375299 TTC26A0AVF1 554 aa23.78■■□□□ 1.4
UPF3A-202ENST00000375299 TARSL2A2RTX5 802 aaKnown RBP23.78■■□□□ 1.4
UPF3A-202ENST00000375299 PLEKHA8P1O95397 391 aa23.78■■□□□ 1.4
UPF3A-202ENST00000375299 CYP19A1P11511 503 aaPredicted RBP23.78■■□□□ 1.4
UPF3A-202ENST00000375299 PAPD7Q5XG87 772 aaKnown RBP23.78■■□□□ 1.4
UPF3A-202ENST00000375299 SLC4A9Q96Q91 983 aa23.78■■□□□ 1.4
UPF3A-202ENST00000375299 HERVK_113P62684 666 aa23.77■■□□□ 1.4
UPF3A-202ENST00000375299 NPY5RQ15761 445 aa23.77■■□□□ 1.4
UPF3A-202ENST00000375299 RPGRIP1Q96KN7 1286 aa23.77■■□□□ 1.4
UPF3A-202ENST00000375299 DNAJC7Q99615 494 aa23.77■■□□□ 1.4
UPF3A-202ENST00000375299 RBM28Q9NW13 759 aaKnown RBP23.77■■□□□ 1.4
UPF3A-202ENST00000375299 ZC3H4Q9UPT8 1303 aaKnown RBP23.77■■□□□ 1.4
UPF3A-202ENST00000375299 CKAP4Q07065 602 aaKnown RBP23.77■■□□□ 1.4
UPF3A-202ENST00000375299 MINDY4BA8MYZ0 360 aa23.76■■□□□ 1.39
UPF3A-202ENST00000375299 H7C1D1 291 aa23.76■■□□□ 1.39
UPF3A-202ENST00000375299 PPFIA4O75335 1185 aa23.76■■□□□ 1.39
UPF3A-202ENST00000375299 RPN1P04843 607 aaKnown RBP23.76■■□□□ 1.39
UPF3A-202ENST00000375299 PARP1P09874 1014 aaKnown RBP23.76■■□□□ 1.39
UPF3A-202ENST00000375299 MB21D1Q8N884 522 aa23.76■■□□□ 1.39
UPF3A-202ENST00000375299 ENAHQ8N8S7 591 aaPredicted RBP23.76■■□□□ 1.39
UPF3A-202ENST00000375299 COG1Q8WTW3 980 aa23.76■■□□□ 1.39
UPF3A-202ENST00000375299 LUC7L2Q9Y383 392 aaKnown RBP23.76■■□□□ 1.39
UPF3A-202ENST00000375299 NUP98P52948 1817 aa23.76■■□□□ 1.39
UPF3A-202ENST00000375299 SNAP23O00161 211 aa23.76■■□□□ 1.39
UPF3A-202ENST00000375299 CORO7P57737 925 aa23.76■■□□□ 1.39
UPF3A-202ENST00000375299 CCDC122Q5T0U0 273 aa23.76■■□□□ 1.39
UPF3A-202ENST00000375299 CATIPQ7Z7H3 387 aa23.76■■□□□ 1.39
UPF3A-202ENST00000375299 ANAPC4Q9UJX5 808 aa23.76■■□□□ 1.39
UPF3A-202ENST00000375299 GDAQ9Y2T3 454 aa23.76■■□□□ 1.39
UPF3A-202ENST00000375299 DLEC1Q9Y238 1755 aa23.75■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms