RNA–Protein interactions for RNA: ENST00000374877.7

CCDC40-203, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC40, Length 3,544 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-203ENST00000374877 ANKRD18AQ8IVF6 992 aa12.55□□□□□ -0.4
CCDC40-203ENST00000374877 CTAGE4Q8IX94 777 aa12.55□□□□□ -0.4
CCDC40-203ENST00000374877 L1RE1Q9UN81 338 aa12.55□□□□□ -0.4
CCDC40-203ENST00000374877 SRPRBQ9Y5M8 271 aaKnown RBP12.55□□□□□ -0.4
CCDC40-203ENST00000374877 STK36Q9NRP7 1315 aa12.55□□□□□ -0.4
CCDC40-203ENST00000374877 POLRMTO00411 1230 aaKnown RBP12.55□□□□□ -0.4
CCDC40-203ENST00000374877 ABL1P00519 1130 aa12.55□□□□□ -0.4
CCDC40-203ENST00000374877 FXR1P51114 621 aaKnown RBP eCLIP12.55□□□□□ -0.4
CCDC40-203ENST00000374877 TTF1Q15361 905 aaPredicted RBP12.55□□□□□ -0.4
CCDC40-203ENST00000374877 SLC15A2Q16348 729 aa12.55□□□□□ -0.4
CCDC40-203ENST00000374877 MSANTD4Q8NCY6 345 aa12.55□□□□□ -0.4
CCDC40-203ENST00000374877 RNF216Q9NWF9 866 aaPredicted RBP12.55□□□□□ -0.4
CCDC40-203ENST00000374877 ADD3Q9UEY8 706 aaKnown RBP12.55□□□□□ -0.4
CCDC40-203ENST00000374877 RAB21Q9UL25 225 aa12.55□□□□□ -0.4
CCDC40-203ENST00000374877 CEP131Q9UPN4 1083 aa12.55□□□□□ -0.4
CCDC40-203ENST00000374877 RASGRP2Q7LDG7 609 aa12.54□□□□□ -0.4
CCDC40-203ENST00000374877 APTXQ7Z2E3 356 aaKnown RBP12.54□□□□□ -0.4
CCDC40-203ENST00000374877 CNGA4Q8IV77 575 aa12.54□□□□□ -0.4
CCDC40-203ENST00000374877 EPSTI1Q96J88 318 aa12.54□□□□□ -0.4
CCDC40-203ENST00000374877 NAPGQ99747 312 aaPredicted RBP12.54□□□□□ -0.4
CCDC40-203ENST00000374877 FOXP1Q9H334 677 aaPredicted RBP12.54□□□□□ -0.4
CCDC40-203ENST00000374877 BSDC1Q9NW68 430 aaPredicted RBP12.54□□□□□ -0.4
CCDC40-203ENST00000374877 LIFRP42702 1097 aa12.54□□□□□ -0.4
CCDC40-203ENST00000374877 USP5P45974 858 aa12.54□□□□□ -0.4
CCDC40-203ENST00000374877 DDR1Q08345 913 aa12.54□□□□□ -0.4
CCDC40-203ENST00000374877 CASP8Q14790 479 aa12.54□□□□□ -0.4
CCDC40-203ENST00000374877 UBE3CQ15386 1083 aa12.54□□□□□ -0.4
CCDC40-203ENST00000374877 PUM3Q15397 648 aaKnown RBP12.54□□□□□ -0.4
CCDC40-203ENST00000374877 STAMQ92783 540 aa12.54□□□□□ -0.4
CCDC40-203ENST00000374877 ZNF512BQ96KM6 892 aaPredicted RBP12.54□□□□□ -0.4
CCDC40-203ENST00000374877 FGFR2P21802 821 aa12.54□□□□□ -0.4
CCDC40-203ENST00000374877 ZNF579Q8NAF0 562 aaKnown RBP12.54□□□□□ -0.4
CCDC40-203ENST00000374877 CTAGE1Q96RT6 745 aa12.54□□□□□ -0.4
CCDC40-203ENST00000374877 STRBPQ96SI9 672 aaKnown RBP12.54□□□□□ -0.4
CCDC40-203ENST00000374877 TTF2Q9UNY4 1162 aaKnown RBP12.54□□□□□ -0.4
CCDC40-203ENST00000374877 NRXN2Q9P2S2 1712 aa12.54□□□□□ -0.4
CCDC40-203ENST00000374877 GYPCP04921 128 aa12.53□□□□□ -0.4
CCDC40-203ENST00000374877 PHKA1P46020 1223 aa12.53□□□□□ -0.4
CCDC40-203ENST00000374877 TNRC6CQ9HCJ0 1690 aaKnown RBP12.53□□□□□ -0.4
CCDC40-203ENST00000374877 A0A087X0B3 334 aa12.53□□□□□ -0.4
CCDC40-203ENST00000374877 FAM205CA6NFA0 338 aa12.53□□□□□ -0.4
CCDC40-203ENST00000374877 N4BP3O15049 544 aa12.53□□□□□ -0.4
CCDC40-203ENST00000374877 MBD4O95243 580 aa12.53□□□□□ -0.4
CCDC40-203ENST00000374877 IVLP07476 585 aa12.53□□□□□ -0.4
CCDC40-203ENST00000374877 CDC25AP30304 524 aa12.53□□□□□ -0.4
CCDC40-203ENST00000374877 WTAPQ15007 396 aa12.53□□□□□ -0.4
CCDC40-203ENST00000374877 MFSD6Q6ZSS7 791 aa12.53□□□□□ -0.4
CCDC40-203ENST00000374877 IFNL3Q8IZI9 196 aa12.53□□□□□ -0.4
CCDC40-203ENST00000374877 LPIN2Q92539 896 aa12.53□□□□□ -0.4
CCDC40-203ENST00000374877 NUP88Q99567 741 aaPredicted RBP12.53□□□□□ -0.4
CCDC40-203ENST00000374877 GBP3Q9H0R5 595 aa12.53□□□□□ -0.4
CCDC40-203ENST00000374877 EPB41L4AQ9HCS5 686 aaPredicted RBP12.53□□□□□ -0.4
CCDC40-203ENST00000374877 CTNND2Q9UQB3 1225 aa12.53□□□□□ -0.4
CCDC40-203ENST00000374877 CASZ1Q86V15 1759 aa12.53□□□□□ -0.4
CCDC40-203ENST00000374877 ARAP2Q8WZ64 1704 aa12.53□□□□□ -0.4
CCDC40-203ENST00000374877 ERICH2A1L162 156 aa12.53□□□□□ -0.4
CCDC40-203ENST00000374877 KLRG2A4D1S0 409 aaPredicted RBP12.53□□□□□ -0.4
CCDC40-203ENST00000374877 DEXIO95424 95 aa12.53□□□□□ -0.4
CCDC40-203ENST00000374877 SART3Q15020 963 aaKnown RBP12.53□□□□□ -0.4
CCDC40-203ENST00000374877 CRY2Q49AN0 593 aa12.53□□□□□ -0.4
CCDC40-203ENST00000374877 NCAPH2Q6IBW4 605 aa12.53□□□□□ -0.4
CCDC40-203ENST00000374877 FOXR1Q6PIV2 292 aa12.53□□□□□ -0.4
CCDC40-203ENST00000374877 NOA1Q8NC60 698 aaKnown RBP12.53□□□□□ -0.4
CCDC40-203ENST00000374877 SPATA20Q8TB22 786 aa12.53□□□□□ -0.4
CCDC40-203ENST00000374877 SLF1Q9BQI6 1058 aa12.53□□□□□ -0.4
CCDC40-203ENST00000374877 ARMT1Q9H993 441 aa12.53□□□□□ -0.4
CCDC40-203ENST00000374877 TUBB2AQ13885 445 aa12.52□□□□□ -0.4
CCDC40-203ENST00000374877 PAGE5Q96GU1 130 aa12.52□□□□□ -0.4
CCDC40-203ENST00000374877 TUBB2BQ9BVA1 445 aa12.52□□□□□ -0.4
CCDC40-203ENST00000374877 VPS16Q9H269 839 aa12.52□□□□□ -0.4
CCDC40-203ENST00000374877 TRIM75PA6NK02 468 aa12.52□□□□□ -0.41
CCDC40-203ENST00000374877 SLC5A1P13866 664 aa12.52□□□□□ -0.41
CCDC40-203ENST00000374877 PBX1P40424 430 aa12.52□□□□□ -0.41
CCDC40-203ENST00000374877 TDO2P48775 406 aa12.52□□□□□ -0.41
CCDC40-203ENST00000374877 ERVK-24P63145 666 aa12.52□□□□□ -0.41
CCDC40-203ENST00000374877 AKAP17AQ02040 695 aaKnown RBP12.52□□□□□ -0.41
CCDC40-203ENST00000374877 CUL4BQ13620 913 aa12.52□□□□□ -0.41
CCDC40-203ENST00000374877 WHAMMP3Q1A5X7 153 aa12.52□□□□□ -0.41
CCDC40-203ENST00000374877 AKNAD1Q5T1N1 836 aa12.52□□□□□ -0.41
CCDC40-203ENST00000374877 MAGEB6Q8N7X4 407 aa12.52□□□□□ -0.41
CCDC40-203ENST00000374877 TACC3Q9Y6A5 838 aa12.52□□□□□ -0.41
CCDC40-203ENST00000374877 RPS8P62241 208 aaKnown RBP12.51□□□□□ -0.41
CCDC40-203ENST00000374877 CDKAL1Q5VV42 579 aa12.51□□□□□ -0.41
CCDC40-203ENST00000374877 TMTC1Q8IUR5 882 aa12.51□□□□□ -0.41
CCDC40-203ENST00000374877 CRACR2BQ8N4Y2 399 aaPredicted RBP12.51□□□□□ -0.41
CCDC40-203ENST00000374877 SYMPKQ92797 1274 aaKnown RBP12.51□□□□□ -0.41
CCDC40-203ENST00000374877 hCG_1642624A0A1W2PR95 340 aa12.51□□□□□ -0.41
CCDC40-203ENST00000374877 PATL2C9JE40 543 aaKnown RBP12.51□□□□□ -0.41
CCDC40-203ENST00000374877 IQUBQ8NA54 791 aa12.51□□□□□ -0.41
CCDC40-203ENST00000374877 HELBQ8NG08 1087 aaPredicted RBP12.51□□□□□ -0.41
CCDC40-203ENST00000374877 IPO4Q8TEX9 1081 aaKnown RBP12.51□□□□□ -0.41
CCDC40-203ENST00000374877 KRT23Q9C075 422 aa12.51□□□□□ -0.41
CCDC40-203ENST00000374877 ACBD3Q9H3P7 528 aa12.51□□□□□ -0.41
CCDC40-203ENST00000374877 CNNM2Q9H8M5 875 aa12.51□□□□□ -0.41
CCDC40-203ENST00000374877 MYH7P12883 1935 aa12.51□□□□□ -0.41
CCDC40-203ENST00000374877 TUBB4BP68371 445 aa12.51□□□□□ -0.41
CCDC40-203ENST00000374877 CHRNDQ07001 517 aa12.51□□□□□ -0.41
CCDC40-203ENST00000374877 GRAPQ13588 217 aa12.51□□□□□ -0.41
CCDC40-203ENST00000374877 GRAPLQ8TC17 118 aaPredicted RBP12.51□□□□□ -0.41
CCDC40-203ENST00000374877 FAM71BQ8TC56 605 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms