RNA–Protein interactions for RNA: ENST00000373720.3

SNRNP40-202, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 1 (best) BASIC

Gene SNRNP40, Length 1,087 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-202ENST00000373720 CCDC112Q8NEF3 446 aa9.95□□□□□ -0.82
SNRNP40-202ENST00000373720 SPATA20Q8TB22 786 aa9.95□□□□□ -0.82
SNRNP40-202ENST00000373720 FBXO2Q9UK22 296 aaPredicted RBP9.95□□□□□ -0.82
SNRNP40-202ENST00000373720 PCDHA4Q9UN74 947 aa9.95□□□□□ -0.82
SNRNP40-202ENST00000373720 CNTNAP5Q8WYK1 1306 aa9.95□□□□□ -0.82
SNRNP40-202ENST00000373720 TNRC6CQ9HCJ0 1690 aaKnown RBP9.95□□□□□ -0.82
SNRNP40-202ENST00000373720 C6orf229H3BNL8 230 aa9.94□□□□□ -0.82
SNRNP40-202ENST00000373720 WDHD1O75717 1129 aaPredicted RBP9.94□□□□□ -0.82
SNRNP40-202ENST00000373720 HLA-DOAP06340 250 aa9.94□□□□□ -0.82
SNRNP40-202ENST00000373720 BTDP43251 543 aa9.94□□□□□ -0.82
SNRNP40-202ENST00000373720 SARSP49591 514 aaKnown RBP9.94□□□□□ -0.82
SNRNP40-202ENST00000373720 PLCD1P51178 756 aa9.94□□□□□ -0.82
SNRNP40-202ENST00000373720 ATP2C1P98194 919 aaPredicted RBP9.94□□□□□ -0.82
SNRNP40-202ENST00000373720 NOLC1Q14978 699 aaKnown RBP eCLIP9.94□□□□□ -0.82
SNRNP40-202ENST00000373720 GPATCH4Q5T3I0 446 aaKnown RBP9.94□□□□□ -0.82
SNRNP40-202ENST00000373720 STRIP1Q5VSL9 837 aa9.94□□□□□ -0.82
SNRNP40-202ENST00000373720 DPP8Q6V1X1 898 aaPredicted RBP9.94□□□□□ -0.82
SNRNP40-202ENST00000373720 KRT25Q7Z3Z0 450 aa9.94□□□□□ -0.82
SNRNP40-202ENST00000373720 LUZP1Q86V48 1076 aa9.94□□□□□ -0.82
SNRNP40-202ENST00000373720 TXNRD3Q86VQ6 643 aa9.94□□□□□ -0.82
SNRNP40-202ENST00000373720 DRC7Q8IY82 874 aa9.94□□□□□ -0.82
SNRNP40-202ENST00000373720 KCTD17Q8N5Z5 321 aa9.94□□□□□ -0.82
SNRNP40-202ENST00000373720 ENOX1Q8TC92 643 aaKnown RBP9.94□□□□□ -0.82
SNRNP40-202ENST00000373720 KIAA1524Q8TCG1 905 aa9.94□□□□□ -0.82
SNRNP40-202ENST00000373720 SH3RF3Q8TEJ3 882 aaPredicted RBP9.94□□□□□ -0.82
SNRNP40-202ENST00000373720 SPOCK2Q92563 424 aa9.94□□□□□ -0.82
SNRNP40-202ENST00000373720 TNFRSF25Q93038 417 aa9.94□□□□□ -0.82
SNRNP40-202ENST00000373720 CTAGE1Q96RT6 745 aa9.94□□□□□ -0.82
SNRNP40-202ENST00000373720 ZKSCAN3Q9BRR0 538 aa9.94□□□□□ -0.82
SNRNP40-202ENST00000373720 LRRC27Q9C0I9 530 aa9.94□□□□□ -0.82
SNRNP40-202ENST00000373720 OSBPL5Q9H0X9 879 aaPredicted RBP9.94□□□□□ -0.82
SNRNP40-202ENST00000373720 C6orf50Q9HD87 102 aa9.94□□□□□ -0.82
SNRNP40-202ENST00000373720 CABP5Q9NP86 173 aa9.94□□□□□ -0.82
SNRNP40-202ENST00000373720 BARHL2Q9NY43 387 aa9.94□□□□□ -0.82
SNRNP40-202ENST00000373720 CLIP2Q9UDT6 1046 aa9.94□□□□□ -0.82
SNRNP40-202ENST00000373720 SEC63Q9UGP8 760 aaKnown RBP9.94□□□□□ -0.82
SNRNP40-202ENST00000373720 TACC3Q9Y6A5 838 aa9.94□□□□□ -0.82
SNRNP40-202ENST00000373720 STK24Q9Y6E0 443 aa9.94□□□□□ -0.82
SNRNP40-202ENST00000373720 LTBP1Q14766 1721 aa9.93□□□□□ -0.82
SNRNP40-202ENST00000373720 COL2A1P02458 1487 aaPredicted RBP9.93□□□□□ -0.82
SNRNP40-202ENST00000373720 H0YIN7 160 aa9.93□□□□□ -0.82
SNRNP40-202ENST00000373720 TRIM37O94972 964 aa9.93□□□□□ -0.82
SNRNP40-202ENST00000373720 PARP1P09874 1014 aaKnown RBP9.93□□□□□ -0.82
SNRNP40-202ENST00000373720 KLRK1P26718 216 aa9.93□□□□□ -0.82
SNRNP40-202ENST00000373720 CDK8P49336 464 aa9.93□□□□□ -0.82
SNRNP40-202ENST00000373720 TOB1P50616 345 aaPredicted RBP9.93□□□□□ -0.82
SNRNP40-202ENST00000373720 KCNQ4P56696 695 aa9.93□□□□□ -0.82
SNRNP40-202ENST00000373720 POSTNQ15063 836 aa9.93□□□□□ -0.82
SNRNP40-202ENST00000373720 TTC38Q5R3I4 469 aa9.93□□□□□ -0.82
SNRNP40-202ENST00000373720 OTUD7BQ6GQQ9 843 aa9.93□□□□□ -0.82
SNRNP40-202ENST00000373720 FOXP4Q8IVH2 680 aaPredicted RBP9.93□□□□□ -0.82
SNRNP40-202ENST00000373720 DHX40Q8IX18 779 aaKnown RBP9.93□□□□□ -0.82
SNRNP40-202ENST00000373720 CCDC144CPQ8IYA2 1237 aa9.93□□□□□ -0.82
SNRNP40-202ENST00000373720 BLIDQ8IZY5 108 aa9.93□□□□□ -0.82
SNRNP40-202ENST00000373720 TGFBRAP1Q8WUH2 860 aa9.93□□□□□ -0.82
SNRNP40-202ENST00000373720 SMARCE1Q969G3 411 aa9.93□□□□□ -0.82
SNRNP40-202ENST00000373720 TEKT1Q969V4 418 aa9.93□□□□□ -0.82
SNRNP40-202ENST00000373720 RRP36Q96EU6 259 aaKnown RBP9.93□□□□□ -0.82
SNRNP40-202ENST00000373720 MYL10Q9BUA6 226 aa9.93□□□□□ -0.82
SNRNP40-202ENST00000373720 RAB34Q9BZG1 259 aa9.93□□□□□ -0.82
SNRNP40-202ENST00000373720 ZMYND12Q9H0C1 365 aa9.93□□□□□ -0.82
SNRNP40-202ENST00000373720 SENP2Q9HC62 589 aa9.93□□□□□ -0.82
SNRNP40-202ENST00000373720 SERPINA10Q9UK55 444 aa9.93□□□□□ -0.82
SNRNP40-202ENST00000373720 PAXBP1Q9Y5B6 917 aa9.93□□□□□ -0.82
SNRNP40-202ENST00000373720 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP9.93□□□□□ -0.82
SNRNP40-202ENST00000373720 QSER1Q2KHR3 1735 aa9.93□□□□□ -0.82
SNRNP40-202ENST00000373720 FLT1P17948 1338 aa9.92□□□□□ -0.82
SNRNP40-202ENST00000373720 CCDC194A0A1B0GVG4 234 aa9.92□□□□□ -0.82
SNRNP40-202ENST00000373720 RXRAP19793 462 aa9.92□□□□□ -0.82
SNRNP40-202ENST00000373720 RASA1P20936 1047 aa9.92□□□□□ -0.82
SNRNP40-202ENST00000373720 RXRBP28702 533 aa9.92□□□□□ -0.82
SNRNP40-202ENST00000373720 RHBDL3P58872 404 aa9.92□□□□□ -0.82
SNRNP40-202ENST00000373720 PLCB2Q00722 1185 aa9.92□□□□□ -0.82
SNRNP40-202ENST00000373720 MDM2Q00987 491 aaPredicted RBP9.92□□□□□ -0.82
SNRNP40-202ENST00000373720 SPAG1Q07617 926 aa9.92□□□□□ -0.82
SNRNP40-202ENST00000373720 DDR1Q08345 913 aa9.92□□□□□ -0.82
SNRNP40-202ENST00000373720 SOGA3Q5TF21 947 aa9.92□□□□□ -0.82
SNRNP40-202ENST00000373720 STK11IPQ8N1F8 1099 aa9.92□□□□□ -0.82
SNRNP40-202ENST00000373720 SRBD1Q8N5C6 995 aaKnown RBP9.92□□□□□ -0.82
SNRNP40-202ENST00000373720 SLC16A10Q8TF71 515 aa9.92□□□□□ -0.82
SNRNP40-202ENST00000373720 CCDC47Q96A33 483 aaKnown RBP9.92□□□□□ -0.82
SNRNP40-202ENST00000373720 ZDHHC15Q96MV8 337 aa9.92□□□□□ -0.82
SNRNP40-202ENST00000373720 MAP7D2Q96T17 732 aa9.92□□□□□ -0.82
SNRNP40-202ENST00000373720 IDI2Q9BXS1 227 aa9.92□□□□□ -0.82
SNRNP40-202ENST00000373720 POLLQ9UGP5 575 aa9.92□□□□□ -0.82
SNRNP40-202ENST00000373720 SERPINB13Q9UIV8 391 aa9.92□□□□□ -0.82
SNRNP40-202ENST00000373720 COL4A1P02462 1669 aa9.91□□□□□ -0.82
SNRNP40-202ENST00000373720 GOLGA6L9A6NEM1 432 aa9.91□□□□□ -0.82
SNRNP40-202ENST00000373720 TTLL1O95922 423 aa9.91□□□□□ -0.82
SNRNP40-202ENST00000373720 APBA3O96018 575 aa9.91□□□□□ -0.82
SNRNP40-202ENST00000373720 USP17L8P0C7I0 530 aa9.91□□□□□ -0.82
SNRNP40-202ENST00000373720 SNHG28P0DPA3 235 aa9.91□□□□□ -0.82
SNRNP40-202ENST00000373720 MARCKSP29966 332 aaPredicted RBP9.91□□□□□ -0.82
SNRNP40-202ENST00000373720 GUCY1A2P33402 732 aa9.91□□□□□ -0.82
SNRNP40-202ENST00000373720 AMPD3Q01432 767 aa9.91□□□□□ -0.82
SNRNP40-202ENST00000373720 GABPAQ06546 454 aa9.91□□□□□ -0.82
SNRNP40-202ENST00000373720 FCHSD1Q86WN1 690 aa9.91□□□□□ -0.82
SNRNP40-202ENST00000373720 ANKRD20A12PQ8NF67 263 aa9.91□□□□□ -0.82
SNRNP40-202ENST00000373720 MKL1Q969V6 931 aa9.91□□□□□ -0.82
SNRNP40-202ENST00000373720 IQCDQ96DY2 449 aa9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms