RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 MCTP2Q6DN12 878 aa16.63■□□□□ 0.25
COL17A1-201ENST00000353479 GALNT17Q6IS24 598 aa16.63■□□□□ 0.25
COL17A1-201ENST00000353479 MAATS1Q7Z4T9 603 aa16.63■□□□□ 0.25
COL17A1-201ENST00000353479 NFE2L3Q9Y4A8 694 aa16.63■□□□□ 0.25
COL17A1-201ENST00000353479 EXOC3O60645 756 aa16.63■□□□□ 0.25
COL17A1-201ENST00000353479 TRPC3Q13507 836 aa16.63■□□□□ 0.25
COL17A1-201ENST00000353479 SMIM5Q71RC9 77 aa16.63■□□□□ 0.25
COL17A1-201ENST00000353479 CDHR2Q9BYE9 1310 aa16.63■□□□□ 0.25
COL17A1-201ENST00000353479 OR52Z1P0C646 297 aa16.63■□□□□ 0.25
COL17A1-201ENST00000353479 GPATCH4Q5T3I0 446 aaKnown RBP16.63■□□□□ 0.25
COL17A1-201ENST00000353479 MIGA2Q7L4E1 593 aa16.63■□□□□ 0.25
COL17A1-201ENST00000353479 KDM3AQ9Y4C1 1321 aa16.62■□□□□ 0.25
COL17A1-201ENST00000353479 SLC16A2P36021 539 aa16.62■□□□□ 0.25
COL17A1-201ENST00000353479 ASPRV1Q53RT3 343 aa16.62■□□□□ 0.25
COL17A1-201ENST00000353479 TRMT44Q8IYL2 757 aaKnown RBP16.62■□□□□ 0.25
COL17A1-201ENST00000353479 MYO3AQ8NEV4 1616 aa16.62■□□□□ 0.25
COL17A1-201ENST00000353479 ZNF569Q5MCW4 686 aa16.62■□□□□ 0.25
COL17A1-201ENST00000353479 ISCA1Q9BUE6 129 aa16.62■□□□□ 0.25
COL17A1-201ENST00000353479 AMNQ9BXJ7 453 aa16.62■□□□□ 0.25
COL17A1-201ENST00000353479 DHX36Q9H2U1 1008 aaKnown RBP16.62■□□□□ 0.25
COL17A1-201ENST00000353479 KANSL2Q9H9L4 492 aa16.62■□□□□ 0.25
COL17A1-201ENST00000353479 TAB2Q9NYJ8 693 aa16.62■□□□□ 0.25
COL17A1-201ENST00000353479 UTP18Q9Y5J1 556 aaKnown RBP eCLIP16.62■□□□□ 0.25
COL17A1-201ENST00000353479 VPS72Q15906 364 aa16.62■□□□□ 0.25
COL17A1-201ENST00000353479 CDAN1Q8IWY9 1227 aa16.62■□□□□ 0.25
COL17A1-201ENST00000353479 CAPZA3Q96KX2 299 aa16.62■□□□□ 0.25
COL17A1-201ENST00000353479 SLC5A4Q9NY91 659 aa16.62■□□□□ 0.25
COL17A1-201ENST00000353479 SOS2Q07890 1332 aaPredicted RBP16.62■□□□□ 0.25
COL17A1-201ENST00000353479 EN1Q05925 392 aaPredicted RBP16.62■□□□□ 0.25
COL17A1-201ENST00000353479 GPBP1Q86WP2 473 aa16.62■□□□□ 0.25
COL17A1-201ENST00000353479 DIP2AQ14689 1571 aa16.62■□□□□ 0.25
COL17A1-201ENST00000353479 OTUD6AQ7L8S5 288 aa16.61■□□□□ 0.25
COL17A1-201ENST00000353479 SUPT20HL1Q3ZLR7 823 aa16.61■□□□□ 0.25
COL17A1-201ENST00000353479 PLA2G4DQ86XP0 818 aa16.61■□□□□ 0.25
COL17A1-201ENST00000353479 PI4KBQ9UBF8 816 aa16.61■□□□□ 0.25
COL17A1-201ENST00000353479 SLFNL1Q499Z3 407 aa16.61■□□□□ 0.25
COL17A1-201ENST00000353479 FBXO18Q8NFZ0 1043 aa16.61■□□□□ 0.25
COL17A1-201ENST00000353479 KIF4AO95239 1232 aa16.61■□□□□ 0.25
COL17A1-201ENST00000353479 CCDC91Q7Z6B0 441 aa16.61■□□□□ 0.25
COL17A1-201ENST00000353479 CLIC6Q96NY7 704 aa16.61■□□□□ 0.25
COL17A1-201ENST00000353479 ZSWIM5Q9P217 1185 aa16.61■□□□□ 0.25
COL17A1-201ENST00000353479 ZC3H13Q5T200 1668 aaKnown RBP16.61■□□□□ 0.25
COL17A1-201ENST00000353479 PLCB3Q01970 1234 aa16.61■□□□□ 0.25
COL17A1-201ENST00000353479 SLFN12Q8IYM2 578 aa16.61■□□□□ 0.25
COL17A1-201ENST00000353479 ZNF526Q8TF50 670 aaPredicted RBP16.61■□□□□ 0.25
COL17A1-201ENST00000353479 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.61■□□□□ 0.25
COL17A1-201ENST00000353479 FMNL3Q8IVF7 1028 aa16.6■□□□□ 0.25
COL17A1-201ENST00000353479 CLIC4Q9Y696 253 aa16.6■□□□□ 0.25
COL17A1-201ENST00000353479 FMNL1O95466 1100 aaPredicted RBP16.6■□□□□ 0.25
COL17A1-201ENST00000353479 MTX1Q13505 466 aa16.6■□□□□ 0.25
COL17A1-201ENST00000353479 TAF12Q16514 161 aa16.6■□□□□ 0.25
COL17A1-201ENST00000353479 DHX37Q8IY37 1157 aaKnown RBP16.6■□□□□ 0.25
COL17A1-201ENST00000353479 KIFAP3Q92845 792 aa16.6■□□□□ 0.25
COL17A1-201ENST00000353479 FAM102BQ5T8I3 360 aa16.6■□□□□ 0.25
COL17A1-201ENST00000353479 POLR3GO15318 223 aaPredicted RBP16.6■□□□□ 0.25
COL17A1-201ENST00000353479 TNFAIP3P21580 790 aa16.6■□□□□ 0.25
COL17A1-201ENST00000353479 PRDX5P30044 214 aa16.6■□□□□ 0.25
COL17A1-201ENST00000353479 PTGDRQ13258 359 aa16.6■□□□□ 0.25
COL17A1-201ENST00000353479 CCDC122Q5T0U0 273 aa16.6■□□□□ 0.25
COL17A1-201ENST00000353479 GSTA5Q7RTV2 222 aa16.6■□□□□ 0.25
COL17A1-201ENST00000353479 RASGRP4Q8TDF6 673 aa16.6■□□□□ 0.25
COL17A1-201ENST00000353479 RNF26Q9BY78 433 aaPredicted RBP16.6■□□□□ 0.25
COL17A1-201ENST00000353479 CPS1P31327 1500 aa16.6■□□□□ 0.25
COL17A1-201ENST00000353479 SPATA31A1Q5TZJ5 1347 aa16.6■□□□□ 0.25
COL17A1-201ENST00000353479 SPATA31A6Q5VVP1 1343 aa16.6■□□□□ 0.25
COL17A1-201ENST00000353479 SH2B2O14492 632 aaPredicted RBP16.59■□□□□ 0.25
COL17A1-201ENST00000353479 NR1I2O75469 434 aa16.59■□□□□ 0.25
COL17A1-201ENST00000353479 CACNB3P54284 484 aa16.59■□□□□ 0.25
COL17A1-201ENST00000353479 CTR9Q6PD62 1173 aa16.59■□□□□ 0.25
COL17A1-201ENST00000353479 GPIHBP1Q8IV16 184 aa16.59■□□□□ 0.25
COL17A1-201ENST00000353479 PRIMPOLQ96LW4 560 aa16.59■□□□□ 0.25
COL17A1-201ENST00000353479 UBXN2AP68543 259 aa16.59■□□□□ 0.25
COL17A1-201ENST00000353479 METTL13Q8N6R0 699 aa16.59■□□□□ 0.25
COL17A1-201ENST00000353479 TRPC6Q9Y210 931 aa16.59■□□□□ 0.25
COL17A1-201ENST00000353479 RIMS1Q86UR5 1692 aaKnown RBP16.59■□□□□ 0.25
COL17A1-201ENST00000353479 GOLGA6L7A0A1B0GV03 622 aa16.59■□□□□ 0.25
COL17A1-201ENST00000353479 CYP2E1P05181 493 aaPredicted RBP16.59■□□□□ 0.25
COL17A1-201ENST00000353479 TRIM14Q14142 442 aa16.59■□□□□ 0.25
COL17A1-201ENST00000353479 SH3RF3Q8TEJ3 882 aaPredicted RBP16.59■□□□□ 0.25
COL17A1-201ENST00000353479 CCDC97Q96F63 343 aaPredicted RBP16.59■□□□□ 0.25
COL17A1-201ENST00000353479 MAP2K1Q02750 393 aaPredicted RBP16.59■□□□□ 0.25
COL17A1-201ENST00000353479 NFIXQ14938 502 aa16.59■□□□□ 0.25
COL17A1-201ENST00000353479 NSUN7Q8NE18 718 aaKnown RBP16.59■□□□□ 0.25
COL17A1-201ENST00000353479 PIGSQ96S52 555 aa16.59■□□□□ 0.25
COL17A1-201ENST00000353479 TEKT3Q9BXF9 490 aa16.59■□□□□ 0.25
COL17A1-201ENST00000353479 PCDHA7Q9UN72 937 aa16.59■□□□□ 0.25
COL17A1-201ENST00000353479 VWA3BQ502W6 1294 aa16.59■□□□□ 0.25
COL17A1-201ENST00000353479 RDH13Q8NBN7 331 aa16.59■□□□□ 0.25
COL17A1-201ENST00000353479 RASAL2Q9UJF2 1139 aa16.59■□□□□ 0.25
COL17A1-201ENST00000353479 PNMA2Q9UL42 364 aa16.59■□□□□ 0.25
COL17A1-201ENST00000353479 ATP6V0A2Q9Y487 856 aa16.59■□□□□ 0.25
COL17A1-201ENST00000353479 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP16.59■□□□□ 0.25
COL17A1-201ENST00000353479 STX10O60499 249 aa16.58■□□□□ 0.25
COL17A1-201ENST00000353479 PPM1FP49593 454 aaPredicted RBP16.58■□□□□ 0.25
COL17A1-201ENST00000353479 USP14P54578 494 aa16.58■□□□□ 0.25
COL17A1-201ENST00000353479 USP17L2Q6R6M4 530 aa16.58■□□□□ 0.25
COL17A1-201ENST00000353479 STRBPQ96SI9 672 aaKnown RBP16.58■□□□□ 0.25
COL17A1-201ENST00000353479 COMMD10Q9Y6G5 202 aa16.58■□□□□ 0.25
COL17A1-201ENST00000353479 DIP2BQ9P265 1576 aa16.58■□□□□ 0.24
COL17A1-201ENST00000353479 CPDO75976 1380 aa16.58■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms