RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 UBXN1Q04323 297 aa7.62□□□□□ -1.19
VPS39-202ENST00000348544 KCNJ12Q14500 433 aa7.62□□□□□ -1.19
VPS39-202ENST00000348544 SAFBQ15424 915 aaKnown RBP eCLIP7.62□□□□□ -1.19
VPS39-202ENST00000348544 IRF2BP1Q8IU81 584 aa7.62□□□□□ -1.19
VPS39-202ENST00000348544 CCDC82Q8N4S0 544 aa7.62□□□□□ -1.19
VPS39-202ENST00000348544 PLBD2Q8NHP8 589 aa7.62□□□□□ -1.19
VPS39-202ENST00000348544 BLZF1Q9H2G9 400 aa7.62□□□□□ -1.19
VPS39-202ENST00000348544 CABP5Q9NP86 173 aa7.62□□□□□ -1.19
VPS39-202ENST00000348544 VPS54Q9P1Q0 977 aa7.62□□□□□ -1.19
VPS39-202ENST00000348544 TBX22Q9Y458 520 aa7.62□□□□□ -1.19
VPS39-202ENST00000348544 CCDC189A1A4V9 331 aa7.62□□□□□ -1.19
VPS39-202ENST00000348544 CIAO1O76071 339 aa7.62□□□□□ -1.19
VPS39-202ENST00000348544 SCP2P22307 547 aa7.62□□□□□ -1.19
VPS39-202ENST00000348544 ATP1A2P50993 1020 aa7.62□□□□□ -1.19
VPS39-202ENST00000348544 SLC7A5Q01650 507 aa7.62□□□□□ -1.19
VPS39-202ENST00000348544 RRAGBQ5VZM2 374 aa7.62□□□□□ -1.19
VPS39-202ENST00000348544 CREG2Q8IUH2 290 aa7.62□□□□□ -1.19
VPS39-202ENST00000348544 MMGT1Q8N4V1 131 aa7.62□□□□□ -1.19
VPS39-202ENST00000348544 OTUD6BQ8N6M0 293 aa7.62□□□□□ -1.19
VPS39-202ENST00000348544 OR8K1Q8NGG5 319 aa7.62□□□□□ -1.19
VPS39-202ENST00000348544 STAG1Q8WVM7 1258 aa7.62□□□□□ -1.19
VPS39-202ENST00000348544 PURBQ96QR8 312 aaKnown RBP7.62□□□□□ -1.19
VPS39-202ENST00000348544 MTRQ99707 1265 aa7.62□□□□□ -1.19
VPS39-202ENST00000348544 RWDD2AQ9UIY3 292 aa7.62□□□□□ -1.19
VPS39-202ENST00000348544 MCM8Q9UJA3 840 aa7.62□□□□□ -1.19
VPS39-202ENST00000348544 PHF8Q9UPP1 1060 aa7.62□□□□□ -1.19
VPS39-202ENST00000348544 AXIN2Q9Y2T1 843 aa7.62□□□□□ -1.19
VPS39-202ENST00000348544 SLC12A7Q9Y666 1083 aa7.62□□□□□ -1.19
VPS39-202ENST00000348544 SCN11AQ9UI33 1791 aa7.61□□□□□ -1.19
VPS39-202ENST00000348544 GLI3P10071 1580 aa7.61□□□□□ -1.19
VPS39-202ENST00000348544 SNRPA1P09661 255 aaKnown RBP7.61□□□□□ -1.19
VPS39-202ENST00000348544 IDEP14735 1019 aa7.61□□□□□ -1.19
VPS39-202ENST00000348544 KCNA6P17658 529 aa7.61□□□□□ -1.19
VPS39-202ENST00000348544 LIFRP42702 1097 aa7.61□□□□□ -1.19
VPS39-202ENST00000348544 NAP1L1P55209 391 aaKnown RBP7.61□□□□□ -1.19
VPS39-202ENST00000348544 NAA35Q5VZE5 725 aa7.61□□□□□ -1.19
VPS39-202ENST00000348544 KCTD16Q68DU8 428 aa7.61□□□□□ -1.19
VPS39-202ENST00000348544 ZNF662Q6ZS27 426 aa7.61□□□□□ -1.19
VPS39-202ENST00000348544 B4GALNT4Q76KP1 1039 aa7.61□□□□□ -1.19
VPS39-202ENST00000348544 RPAINQ86UA6 219 aa7.61□□□□□ -1.19
VPS39-202ENST00000348544 SMARCAL1Q9NZC9 954 aa7.61□□□□□ -1.19
VPS39-202ENST00000348544 ZSWIM5Q9P217 1185 aa7.61□□□□□ -1.19
VPS39-202ENST00000348544 CEP126Q9P2H0 1117 aa7.61□□□□□ -1.19
VPS39-202ENST00000348544 TBC1D2BQ9UPU7 963 aa7.61□□□□□ -1.19
VPS39-202ENST00000348544 NID2Q14112 1375 aa7.61□□□□□ -1.19
VPS39-202ENST00000348544 ANO9A1A5B4 782 aa7.61□□□□□ -1.19
VPS39-202ENST00000348544 H0YHG0 523 aa7.61□□□□□ -1.19
VPS39-202ENST00000348544 ADD2P35612 726 aa7.61□□□□□ -1.19
VPS39-202ENST00000348544 MCAMP43121 646 aa7.61□□□□□ -1.19
VPS39-202ENST00000348544 APBA1Q02410 837 aa7.61□□□□□ -1.19
VPS39-202ENST00000348544 PAK1Q13153 545 aa7.61□□□□□ -1.19
VPS39-202ENST00000348544 MEA1Q16626 185 aa7.61□□□□□ -1.19
VPS39-202ENST00000348544 PREPLQ4J6C6 727 aaPredicted RBP7.61□□□□□ -1.19
VPS39-202ENST00000348544 FKBP15Q5T1M5 1219 aa7.61□□□□□ -1.19
VPS39-202ENST00000348544 TTLL7Q6ZT98 887 aa7.61□□□□□ -1.19
VPS39-202ENST00000348544 KIAA1328Q86T90 577 aa7.61□□□□□ -1.19
VPS39-202ENST00000348544 MB21D1Q8N884 522 aa7.61□□□□□ -1.19
VPS39-202ENST00000348544 SMCR8Q8TEV9 937 aaPredicted RBP7.61□□□□□ -1.19
VPS39-202ENST00000348544 NELFBQ8WX92 580 aa7.61□□□□□ -1.19
VPS39-202ENST00000348544 WASF1Q92558 559 aa7.61□□□□□ -1.19
VPS39-202ENST00000348544 RNPC3Q96LT9 517 aaKnown RBP7.61□□□□□ -1.19
VPS39-202ENST00000348544 ZIM3Q96PE6 472 aa7.61□□□□□ -1.19
VPS39-202ENST00000348544 PAGR1Q9BTK6 254 aa7.61□□□□□ -1.19
VPS39-202ENST00000348544 JADE2Q9NQC1 790 aa7.61□□□□□ -1.19
VPS39-202ENST00000348544 EHD2Q9NZN4 543 aa7.61□□□□□ -1.19
VPS39-202ENST00000348544 CEP131Q9UPN4 1083 aa7.61□□□□□ -1.19
VPS39-202ENST00000348544 MAPK8IP1Q9UQF2 711 aa7.61□□□□□ -1.19
VPS39-202ENST00000348544 LUC7L2Q9Y383 392 aaKnown RBP7.61□□□□□ -1.19
VPS39-202ENST00000348544 ATRNO75882 1429 aa7.6□□□□□ -1.19
VPS39-202ENST00000348544 MACROD2A1Z1Q3 448 aa7.6□□□□□ -1.19
VPS39-202ENST00000348544 TRIM49BA6NDI0 452 aa7.6□□□□□ -1.19
VPS39-202ENST00000348544 RASSF10A6NK89 507 aa7.6□□□□□ -1.19
VPS39-202ENST00000348544 NBPF26B4DH59 902 aa7.6□□□□□ -1.19
VPS39-202ENST00000348544 IFIT3O14879 490 aaKnown RBP7.6□□□□□ -1.19
VPS39-202ENST00000348544 KRT86O43790 486 aa7.6□□□□□ -1.19
VPS39-202ENST00000348544 OPA1O60313 960 aa7.6□□□□□ -1.19
VPS39-202ENST00000348544 ZEB2O60315 1214 aa7.6□□□□□ -1.19
VPS39-202ENST00000348544 KIAA0754O94854 1291 aa7.6□□□□□ -1.19
VPS39-202ENST00000348544 KRT14P02533 472 aa7.6□□□□□ -1.19
VPS39-202ENST00000348544 LSP1P33241 339 aa7.6□□□□□ -1.19
VPS39-202ENST00000348544 TDO2P48775 406 aa7.6□□□□□ -1.19
VPS39-202ENST00000348544 GUCY1A3Q02108 690 aa7.6□□□□□ -1.19
VPS39-202ENST00000348544 CYP27A1Q02318 531 aa7.6□□□□□ -1.19
VPS39-202ENST00000348544 CTDSPL2Q05D32 466 aa7.6□□□□□ -1.19
VPS39-202ENST00000348544 SPAG1Q07617 926 aa7.6□□□□□ -1.19
VPS39-202ENST00000348544 HAUS3Q68CZ6 603 aa7.6□□□□□ -1.19
VPS39-202ENST00000348544 NBPF10Q6P3W6 841 aaKnown RBP7.6□□□□□ -1.19
VPS39-202ENST00000348544 ZNF572Q7Z3I7 529 aaPredicted RBP7.6□□□□□ -1.19
VPS39-202ENST00000348544 CRACR2BQ8N4Y2 399 aaPredicted RBP7.6□□□□□ -1.19
VPS39-202ENST00000348544 NBPF15Q8N660 670 aa7.6□□□□□ -1.19
VPS39-202ENST00000348544 KCNH5Q8NCM2 988 aa7.6□□□□□ -1.19
VPS39-202ENST00000348544 ZNF507Q8TCN5 953 aa7.6□□□□□ -1.19
VPS39-202ENST00000348544 CWC25Q9NXE8 425 aaPredicted RBP7.6□□□□□ -1.19
VPS39-202ENST00000348544 CAPN11Q9UMQ6 739 aa7.6□□□□□ -1.19
VPS39-202ENST00000348544 SNX12Q9UMY4 172 aa7.6□□□□□ -1.19
VPS39-202ENST00000348544 AKAP11Q9UKA4 1901 aa7.6□□□□□ -1.19
VPS39-202ENST00000348544 MYH13Q9UKX3 1938 aa7.6□□□□□ -1.19
VPS39-202ENST00000348544 TRIM75PA6NK02 468 aa7.6□□□□□ -1.19
VPS39-202ENST00000348544 LGALS16A8MUM7 142 aa7.6□□□□□ -1.19
VPS39-202ENST00000348544 ZNF263O14978 683 aa7.6□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms