RNA–Protein interactions for RNA: ENST00000343599.5

ZNF540-202, Transcript of zinc finger protein 540, humanhuman

APPRIS P3 TSL 5 BASIC

Gene ZNF540, Length 3,073 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-202ENST00000343599 KIAA0825Q8IV33 1275 aa8.67□□□□□ -1.02
ZNF540-202ENST00000343599 SUCLG2Q96I99 432 aa8.67□□□□□ -1.02
ZNF540-202ENST00000343599 ATP8A2Q9NTI2 1148 aa8.67□□□□□ -1.02
ZNF540-202ENST00000343599 MYO5AQ9Y4I1 1855 aaKnown RBP8.67□□□□□ -1.02
ZNF540-202ENST00000343599 TACC3Q9Y6A5 838 aa8.67□□□□□ -1.02
ZNF540-202ENST00000343599 USP17L10C9JJH3 530 aa8.67□□□□□ -1.02
ZNF540-202ENST00000343599 PROB1E7EW31 1015 aa8.67□□□□□ -1.02
ZNF540-202ENST00000343599 HLA-DOAP06340 250 aa8.67□□□□□ -1.02
ZNF540-202ENST00000343599 PTMSP20962 102 aa8.67□□□□□ -1.02
ZNF540-202ENST00000343599 NASPP49321 788 aaPredicted RBP8.67□□□□□ -1.02
ZNF540-202ENST00000343599 PHF6Q8IWS0 365 aaKnown RBP eCLIP8.67□□□□□ -1.02
ZNF540-202ENST00000343599 SSH3Q8TE77 659 aa8.67□□□□□ -1.02
ZNF540-202ENST00000343599 TBX21Q9UL17 535 aa8.67□□□□□ -1.02
ZNF540-202ENST00000343599 C19orf67A6NJJ6 358 aa8.66□□□□□ -1.02
ZNF540-202ENST00000343599 TLR3O15455 904 aaKnown RBP8.66□□□□□ -1.02
ZNF540-202ENST00000343599 FMNL1O95466 1100 aaPredicted RBP8.66□□□□□ -1.02
ZNF540-202ENST00000343599 TIMP1P01033 207 aa8.66□□□□□ -1.02
ZNF540-202ENST00000343599 FLT3LGP49771 235 aa8.66□□□□□ -1.02
ZNF540-202ENST00000343599 SLFN5Q08AF3 891 aa8.66□□□□□ -1.02
ZNF540-202ENST00000343599 SKOR2Q2VWA4 1001 aaPredicted RBP8.66□□□□□ -1.02
ZNF540-202ENST00000343599 ZFPM1Q8IX07 1006 aa8.66□□□□□ -1.02
ZNF540-202ENST00000343599 CCDC155Q8N6L0 562 aa8.66□□□□□ -1.02
ZNF540-202ENST00000343599 PDLIM2Q96JY6 352 aa8.66□□□□□ -1.02
ZNF540-202ENST00000343599 USP44Q9H0E7 712 aa8.66□□□□□ -1.02
ZNF540-202ENST00000343599 ASCC2Q9H1I8 757 aaPredicted RBP8.66□□□□□ -1.02
ZNF540-202ENST00000343599 MIS18AQ9NYP9 233 aa8.66□□□□□ -1.02
ZNF540-202ENST00000343599 LRRFIP2Q9Y608 721 aaKnown RBP8.66□□□□□ -1.02
ZNF540-202ENST00000343599 PITPNM1O00562 1244 aa8.66□□□□□ -1.02
ZNF540-202ENST00000343599 DUSP11O75319 330 aaKnown RBP8.66□□□□□ -1.02
ZNF540-202ENST00000343599 GABPB1Q06547 395 aaPredicted RBP8.66□□□□□ -1.02
ZNF540-202ENST00000343599 REPS2Q8NFH8 660 aa8.66□□□□□ -1.02
ZNF540-202ENST00000343599 SEMA6BQ9H3T3 888 aa8.66□□□□□ -1.02
ZNF540-202ENST00000343599 TDRD3Q9H7E2 651 aaKnown RBP8.66□□□□□ -1.02
ZNF540-202ENST00000343599 CEP126Q9P2H0 1117 aa8.66□□□□□ -1.02
ZNF540-202ENST00000343599 ZKSCAN5Q9Y2L8 839 aa8.66□□□□□ -1.02
ZNF540-202ENST00000343599 ZEB2O60315 1214 aa8.65□□□□□ -1.02
ZNF540-202ENST00000343599 RAB11FIP3O75154 756 aa8.65□□□□□ -1.02
ZNF540-202ENST00000343599 MAGEA10P43363 369 aaPredicted RBP8.65□□□□□ -1.02
ZNF540-202ENST00000343599 FAM193AP78312 1265 aa8.65□□□□□ -1.02
ZNF540-202ENST00000343599 CCDC178Q5BJE1 867 aa8.65□□□□□ -1.02
ZNF540-202ENST00000343599 TMEM179Q6ZVK1 233 aa8.65□□□□□ -1.02
ZNF540-202ENST00000343599 SH3BP5LQ7L8J4 393 aa8.65□□□□□ -1.02
ZNF540-202ENST00000343599 NOL10Q9BSC4 688 aaKnown RBP8.65□□□□□ -1.02
ZNF540-202ENST00000343599 NYAP2Q9P242 653 aa8.65□□□□□ -1.02
ZNF540-202ENST00000343599 IGKV6D-41A0A0C4DH26 115 aa8.65□□□□□ -1.02
ZNF540-202ENST00000343599 CCDC66A2RUB6 948 aa8.65□□□□□ -1.02
ZNF540-202ENST00000343599 PTMAP06454 111 aaKnown RBP8.65□□□□□ -1.02
ZNF540-202ENST00000343599 HERVK_113P62684 666 aa8.65□□□□□ -1.02
ZNF540-202ENST00000343599 TRAF1Q13077 416 aa8.65□□□□□ -1.02
ZNF540-202ENST00000343599 MFSD5Q6N075 450 aa8.65□□□□□ -1.02
ZNF540-202ENST00000343599 RPUSD2Q8IZ73 545 aaKnown RBP8.65□□□□□ -1.02
ZNF540-202ENST00000343599 SP7Q8TDD2 431 aaPredicted RBP8.65□□□□□ -1.02
ZNF540-202ENST00000343599 PRIMPOLQ96LW4 560 aa8.65□□□□□ -1.02
ZNF540-202ENST00000343599 RNF208Q9H0X6 261 aa8.65□□□□□ -1.02
ZNF540-202ENST00000343599 TFRCP02786 760 aaKnown RBP8.65□□□□□ -1.03
ZNF540-202ENST00000343599 FGRP09769 529 aa8.65□□□□□ -1.03
ZNF540-202ENST00000343599 DSG3P32926 999 aa8.65□□□□□ -1.03
ZNF540-202ENST00000343599 AIMP1Q12904 312 aaKnown RBP8.65□□□□□ -1.03
ZNF540-202ENST00000343599 METTL24Q5JXM2 366 aa8.65□□□□□ -1.03
ZNF540-202ENST00000343599 GPR142Q7Z601 462 aa8.65□□□□□ -1.03
ZNF540-202ENST00000343599 TIGD1Q96MW7 591 aa8.65□□□□□ -1.03
ZNF540-202ENST00000343599 CCDC8Q9H0W5 538 aaPredicted RBP8.65□□□□□ -1.03
ZNF540-202ENST00000343599 TCP11L1Q9NUJ3 509 aa8.65□□□□□ -1.03
ZNF540-202ENST00000343599 USP40Q9NVE5 1235 aa8.65□□□□□ -1.03
ZNF540-202ENST00000343599 FAM50BQ9Y247 325 aa8.65□□□□□ -1.03
ZNF540-202ENST00000343599 TMX2Q9Y320 296 aa8.65□□□□□ -1.03
ZNF540-202ENST00000343599 WDR19Q8NEZ3 1342 aa8.64□□□□□ -1.03
ZNF540-202ENST00000343599 KBTBD13C9JR72 458 aa8.64□□□□□ -1.03
ZNF540-202ENST00000343599 MRPS5P82675 430 aaKnown RBP8.64□□□□□ -1.03
ZNF540-202ENST00000343599 HMGN5P82970 282 aaKnown RBP8.64□□□□□ -1.03
ZNF540-202ENST00000343599 CHRDL2Q6WN34 429 aa8.64□□□□□ -1.03
ZNF540-202ENST00000343599 NUP133Q8WUM0 1156 aa8.64□□□□□ -1.03
ZNF540-202ENST00000343599 MTA3Q9BTC8 594 aa8.64□□□□□ -1.03
ZNF540-202ENST00000343599 ZNF287Q9HBT7 754 aa8.64□□□□□ -1.03
ZNF540-202ENST00000343599 B4DLN1 442 aa8.64□□□□□ -1.03
ZNF540-202ENST00000343599 APPP05067 770 aa8.64□□□□□ -1.03
ZNF540-202ENST00000343599 GNAT2P19087 354 aa8.64□□□□□ -1.03
ZNF540-202ENST00000343599 MRPL12P52815 198 aaKnown RBP8.64□□□□□ -1.03
ZNF540-202ENST00000343599 ZNF771Q7L3S4 317 aaPredicted RBP8.64□□□□□ -1.03
ZNF540-202ENST00000343599 LBHD1Q9BQE6 289 aaPredicted RBP8.64□□□□□ -1.03
ZNF540-202ENST00000343599 TMEM39BQ9GZU3 492 aa8.64□□□□□ -1.03
ZNF540-202ENST00000343599 IL23AQ9NPF7 189 aa8.64□□□□□ -1.03
ZNF540-202ENST00000343599 PDLIM7Q9NR12 457 aa8.64□□□□□ -1.03
ZNF540-202ENST00000343599 ZBTB21Q9ULJ3 1066 aa8.64□□□□□ -1.03
ZNF540-202ENST00000343599 TRIM66O15016 1216 aa8.63□□□□□ -1.03
ZNF540-202ENST00000343599 FKBP5Q13451 457 aaPredicted RBP8.63□□□□□ -1.03
ZNF540-202ENST00000343599 PDE12Q6L8Q7 609 aaKnown RBP8.63□□□□□ -1.03
ZNF540-202ENST00000343599 ZSCAN25Q6NSZ9 544 aa8.63□□□□□ -1.03
ZNF540-202ENST00000343599 RASGRP2Q7LDG7 609 aa8.63□□□□□ -1.03
ZNF540-202ENST00000343599 FAM160B2Q86V87 743 aa8.63□□□□□ -1.03
ZNF540-202ENST00000343599 GPR65Q8IYL9 337 aa8.63□□□□□ -1.03
ZNF540-202ENST00000343599 TBC1D32Q96NH3 1257 aa8.63□□□□□ -1.03
ZNF540-202ENST00000343599 FEZ1Q99689 392 aa8.63□□□□□ -1.03
ZNF540-202ENST00000343599 POLR3EQ9NVU0 708 aa8.63□□□□□ -1.03
ZNF540-202ENST00000343599 C9orf78Q9NZ63 289 aaPredicted RBP8.63□□□□□ -1.03
ZNF540-202ENST00000343599 RBPJLQ9UBG7 517 aa8.63□□□□□ -1.03
ZNF540-202ENST00000343599 KIF3AQ9Y496 699 aa8.63□□□□□ -1.03
ZNF540-202ENST00000343599 PRR33A8MZF0 331 aa8.63□□□□□ -1.03
ZNF540-202ENST00000343599 ADAMTS4O75173 837 aa8.63□□□□□ -1.03
ZNF540-202ENST00000343599 BRD1O95696 1058 aa8.63□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms