RNA–Protein interactions for RNA: ENST00000342415.5

SNRNP48-201, Transcript of small nuclear ribonucleoprotein U11/U12 subunit 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNRNP48, Length 4,173 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP48-201ENST00000342415 CABP7Q86V35 215 aa13.89□□□□□ -0.19
SNRNP48-201ENST00000342415 PAGE5Q96GU1 130 aa13.89□□□□□ -0.19
SNRNP48-201ENST00000342415 FOXP1Q9H334 677 aaPredicted RBP13.89□□□□□ -0.19
SNRNP48-201ENST00000342415 CPVLQ9H3G5 476 aa13.89□□□□□ -0.19
SNRNP48-201ENST00000342415 PTPREP23469 700 aa13.88□□□□□ -0.19
SNRNP48-201ENST00000342415 RFX5P48382 616 aaPredicted RBP13.88□□□□□ -0.19
SNRNP48-201ENST00000342415 GIMAP7Q8NHV1 300 aa13.88□□□□□ -0.19
SNRNP48-201ENST00000342415 RPGRQ92834 1020 aaKnown RBP13.88□□□□□ -0.19
SNRNP48-201ENST00000342415 CCDC151A5D8V7 595 aa13.88□□□□□ -0.19
SNRNP48-201ENST00000342415 LDHCP07864 332 aa13.88□□□□□ -0.19
SNRNP48-201ENST00000342415 TRIML1Q8N9V2 468 aa13.88□□□□□ -0.19
SNRNP48-201ENST00000342415 TGFBRAP1Q8WUH2 860 aa13.88□□□□□ -0.19
SNRNP48-201ENST00000342415 RRP36Q96EU6 259 aaKnown RBP13.88□□□□□ -0.19
SNRNP48-201ENST00000342415 C8orf37Q96NL8 207 aa13.88□□□□□ -0.19
SNRNP48-201ENST00000342415 HDAC6Q9UBN7 1215 aa13.88□□□□□ -0.19
SNRNP48-201ENST00000342415 MROH5Q6ZUA9 1318 aa13.88□□□□□ -0.19
SNRNP48-201ENST00000342415 NMT2O60551 498 aa13.88□□□□□ -0.19
SNRNP48-201ENST00000342415 ERCC5P28715 1186 aaPredicted RBP13.88□□□□□ -0.19
SNRNP48-201ENST00000342415 BAZ2BQ9UIF8 2168 aaKnown RBP13.88□□□□□ -0.19
SNRNP48-201ENST00000342415 TMEM110-MUSTN1A8MSY1 372 aa13.87□□□□□ -0.19
SNRNP48-201ENST00000342415 PPP1R12BO60237 982 aaPredicted RBP13.87□□□□□ -0.19
SNRNP48-201ENST00000342415 SCG2P13521 617 aa13.87□□□□□ -0.19
SNRNP48-201ENST00000342415 SLC7A5Q01650 507 aa13.87□□□□□ -0.19
SNRNP48-201ENST00000342415 KRT31Q15323 416 aa13.87□□□□□ -0.19
SNRNP48-201ENST00000342415 BLIDQ8IZY5 108 aa13.87□□□□□ -0.19
SNRNP48-201ENST00000342415 GSDMAQ96QA5 445 aa13.87□□□□□ -0.19
SNRNP48-201ENST00000342415 ALDH8A1Q9H2A2 487 aaPredicted RBP13.87□□□□□ -0.19
SNRNP48-201ENST00000342415 LRWD1Q9UFC0 647 aa13.87□□□□□ -0.19
SNRNP48-201ENST00000342415 SRPRBQ9Y5M8 271 aaKnown RBP13.87□□□□□ -0.19
SNRNP48-201ENST00000342415 MAP3K15Q6ZN16 1313 aa13.87□□□□□ -0.19
SNRNP48-201ENST00000342415 HEG1Q9ULI3 1381 aa13.87□□□□□ -0.19
SNRNP48-201ENST00000342415 ABCA9Q8IUA7 1624 aa13.87□□□□□ -0.19
SNRNP48-201ENST00000342415 TADA3O75528 432 aa13.87□□□□□ -0.19
SNRNP48-201ENST00000342415 PARP1P09874 1014 aaKnown RBP13.87□□□□□ -0.19
SNRNP48-201ENST00000342415 CUL4BQ13620 913 aa13.87□□□□□ -0.19
SNRNP48-201ENST00000342415 TRIM14Q14142 442 aa13.87□□□□□ -0.19
SNRNP48-201ENST00000342415 CASP8Q14790 479 aa13.87□□□□□ -0.19
SNRNP48-201ENST00000342415 PNMA1Q8ND90 353 aa13.87□□□□□ -0.19
SNRNP48-201ENST00000342415 BCAS4Q8TDM0 211 aa13.87□□□□□ -0.19
SNRNP48-201ENST00000342415 POLD4Q9HCU8 107 aa13.87□□□□□ -0.19
SNRNP48-201ENST00000342415 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.87□□□□□ -0.195e-8■■■■■ 59.7
SNRNP48-201ENST00000342415 RIMBP2O15034 1052 aa13.87□□□□□ -0.19
SNRNP48-201ENST00000342415 CCT5P48643 541 aa13.87□□□□□ -0.19
SNRNP48-201ENST00000342415 UBLCP1Q8WVY7 318 aaPredicted RBP13.87□□□□□ -0.19
SNRNP48-201ENST00000342415 TUBGCP2Q9BSJ2 902 aa13.87□□□□□ -0.19
SNRNP48-201ENST00000342415 LY9Q9HBG7 655 aa13.87□□□□□ -0.19
SNRNP48-201ENST00000342415 GNA11P29992 359 aa13.86□□□□□ -0.19
SNRNP48-201ENST00000342415 WHAMMP3Q1A5X7 153 aa13.86□□□□□ -0.19
SNRNP48-201ENST00000342415 FCHSD1Q86WN1 690 aa13.86□□□□□ -0.19
SNRNP48-201ENST00000342415 SNX29Q8TEQ0 813 aa13.86□□□□□ -0.19
SNRNP48-201ENST00000342415 MRPL44Q9H9J2 332 aaKnown RBP13.86□□□□□ -0.19
SNRNP48-201ENST00000342415 GSTTP1A0A1W2PQM5 241 aa13.86□□□□□ -0.19
SNRNP48-201ENST00000342415 TUBBP07437 444 aa13.86□□□□□ -0.19
SNRNP48-201ENST00000342415 RFC4P35249 363 aa13.86□□□□□ -0.19
SNRNP48-201ENST00000342415 MAP2K1Q02750 393 aaPredicted RBP13.86□□□□□ -0.19
SNRNP48-201ENST00000342415 RABL6Q3YEC7 729 aaPredicted RBP13.86□□□□□ -0.19
SNRNP48-201ENST00000342415 TICAM2Q86XR7 235 aa13.86□□□□□ -0.19
SNRNP48-201ENST00000342415 TFR2Q9UP52 801 aa13.86□□□□□ -0.19
SNRNP48-201ENST00000342415 RRP15Q9Y3B9 282 aaKnown RBP13.86□□□□□ -0.19
SNRNP48-201ENST00000342415 SAMM50Q9Y512 469 aa13.86□□□□□ -0.19
SNRNP48-201ENST00000342415 RNF40O75150 1001 aa13.86□□□□□ -0.19
SNRNP48-201ENST00000342415 KRT13P13646 458 aa13.86□□□□□ -0.19
SNRNP48-201ENST00000342415 C2orf54Q08AI8 447 aa13.86□□□□□ -0.19
SNRNP48-201ENST00000342415 LRRC41Q15345 812 aa13.86□□□□□ -0.19
SNRNP48-201ENST00000342415 ACTN2P35609 894 aa13.86□□□□□ -0.19
SNRNP48-201ENST00000342415 HERC4Q5GLZ8 1057 aaPredicted RBP13.86□□□□□ -0.19
SNRNP48-201ENST00000342415 PIGBQ92521 554 aa13.86□□□□□ -0.19
SNRNP48-201ENST00000342415 HAUS4Q9H6D7 363 aa13.86□□□□□ -0.19
SNRNP48-201ENST00000342415 PP2D1A8MPX8 630 aa13.85□□□□□ -0.19
SNRNP48-201ENST00000342415 CEP104O60308 925 aa13.85□□□□□ -0.19
SNRNP48-201ENST00000342415 GNGT1P63211 74 aa13.85□□□□□ -0.19
SNRNP48-201ENST00000342415 MICALCLQ6ZW33 695 aa13.85□□□□□ -0.19
SNRNP48-201ENST00000342415 CCDC25Q86WR0 208 aa13.85□□□□□ -0.19
SNRNP48-201ENST00000342415 ADGRG1Q9Y653 693 aa13.85□□□□□ -0.19
SNRNP48-201ENST00000342415 DEPDC5O75140 1603 aa13.85□□□□□ -0.19
SNRNP48-201ENST00000342415 GTPBP6O43824 516 aaPredicted RBP13.85□□□□□ -0.19
SNRNP48-201ENST00000342415 MFAP3LO75121 409 aa13.85□□□□□ -0.19
SNRNP48-201ENST00000342415 LIFRP42702 1097 aa13.85□□□□□ -0.19
SNRNP48-201ENST00000342415 TUBB4BP68371 445 aa13.85□□□□□ -0.19
SNRNP48-201ENST00000342415 SYCP3Q8IZU3 236 aa13.85□□□□□ -0.19
SNRNP48-201ENST00000342415 KCNB2Q92953 911 aa13.85□□□□□ -0.19
SNRNP48-201ENST00000342415 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.85□□□□□ -0.196e-7■■■■□ 21.9
SNRNP48-201ENST00000342415 SLAIN2Q9P270 581 aa13.85□□□□□ -0.19
SNRNP48-201ENST00000342415 HPS5Q9UPZ3 1129 aa13.85□□□□□ -0.19
SNRNP48-201ENST00000342415 SMCO2A6NFE2 343 aa13.85□□□□□ -0.19
SNRNP48-201ENST00000342415 ADAT2Q7Z6V5 191 aaKnown RBP13.85□□□□□ -0.19
SNRNP48-201ENST00000342415 TEX11Q8IYF3 940 aa13.85□□□□□ -0.19
SNRNP48-201ENST00000342415 SELENOSQ9BQE4 189 aa13.85□□□□□ -0.19
SNRNP48-201ENST00000342415 H7C1D1 291 aa13.84□□□□□ -0.19
SNRNP48-201ENST00000342415 NDUFA10O95299 355 aa13.84□□□□□ -0.19
SNRNP48-201ENST00000342415 TFRCP02786 760 aaKnown RBP13.84□□□□□ -0.19
SNRNP48-201ENST00000342415 NONOQ15233 471 aaKnown RBP eCLIP13.84□□□□□ -0.19
SNRNP48-201ENST00000342415 KIAA0753Q2KHM9 967 aa13.84□□□□□ -0.19
SNRNP48-201ENST00000342415 CPLX4Q7Z7G2 160 aa13.84□□□□□ -0.19
SNRNP48-201ENST00000342415 GOLGA5Q8TBA6 731 aa13.84□□□□□ -0.19
SNRNP48-201ENST00000342415 RNF26Q9BY78 433 aaPredicted RBP13.84□□□□□ -0.19
SNRNP48-201ENST00000342415 PPANQ9NQ55 473 aaKnown RBP13.84□□□□□ -0.19
SNRNP48-201ENST00000342415 TRIM10Q9UDY6 481 aa13.84□□□□□ -0.19
SNRNP48-201ENST00000342415 CDC42BPGQ6DT37 1551 aa13.84□□□□□ -0.19
SNRNP48-201ENST00000342415 TCHHQ07283 1943 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms