RNA–Protein interactions for RNA: ENST00000339438.10

CSDE1-202, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 4,006 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-202ENST00000339438 PDCP20941 246 aa6.34□□□□□ -1.39
CSDE1-202ENST00000339438 AMPD2Q01433 879 aa6.34□□□□□ -1.39
CSDE1-202ENST00000339438 DHX8Q14562 1220 aaKnown RBP6.34□□□□□ -1.39
CSDE1-202ENST00000339438 GBP6Q6ZN66 633 aa6.34□□□□□ -1.39
CSDE1-202ENST00000339438 PI4KAP1Q8N8J0 262 aa6.34□□□□□ -1.39
CSDE1-202ENST00000339438 NOA1Q8NC60 698 aaKnown RBP6.34□□□□□ -1.39
CSDE1-202ENST00000339438 SMARCC2Q8TAQ2 1214 aa6.34□□□□□ -1.39
CSDE1-202ENST00000339438 AFAP1L1Q8TED9 768 aa6.34□□□□□ -1.39
CSDE1-202ENST00000339438 MAP4K1Q92918 833 aa6.34□□□□□ -1.39
CSDE1-202ENST00000339438 FAM107BQ9H098 131 aa6.34□□□□□ -1.39
CSDE1-202ENST00000339438 SLC24A3Q9HC58 644 aa6.34□□□□□ -1.39
CSDE1-202ENST00000339438 SEC31BQ9NQW1 1179 aa6.34□□□□□ -1.39
CSDE1-202ENST00000339438 FBXO3Q9UK99 471 aa6.34□□□□□ -1.39
CSDE1-202ENST00000339438 CYP46A1Q9Y6A2 500 aa6.34□□□□□ -1.39
CSDE1-202ENST00000339438 ROBO3Q96MS0 1386 aa6.34□□□□□ -1.39
CSDE1-202ENST00000339438 ARID4AP29374 1257 aaPredicted RBP6.34□□□□□ -1.39
CSDE1-202ENST00000339438 GNG11P61952 73 aa6.34□□□□□ -1.39
CSDE1-202ENST00000339438 NUTM1Q86Y26 1132 aa6.34□□□□□ -1.39
CSDE1-202ENST00000339438 GNL3Q9BVP2 549 aaKnown RBP eCLIP6.34□□□□□ -1.39
CSDE1-202ENST00000339438 TACC3Q9Y6A5 838 aa6.34□□□□□ -1.39
CSDE1-202ENST00000339438 CHD7Q9P2D1 2997 aa6.34□□□□□ -1.39
CSDE1-202ENST00000339438 CHUKO15111 745 aa6.34□□□□□ -1.39
CSDE1-202ENST00000339438 ECM2O94769 699 aaPredicted RBP6.34□□□□□ -1.39
CSDE1-202ENST00000339438 ZNF202O95125 648 aa6.34□□□□□ -1.39
CSDE1-202ENST00000339438 CTDNEP1O95476 244 aa6.34□□□□□ -1.39
CSDE1-202ENST00000339438 MTF1Q14872 753 aa6.34□□□□□ -1.39
CSDE1-202ENST00000339438 YTHDF3Q7Z739 585 aaKnown RBP6.34□□□□□ -1.39
CSDE1-202ENST00000339438 USP28Q96RU2 1077 aa6.34□□□□□ -1.39
CSDE1-202ENST00000339438 CDC23Q9UJX2 597 aa6.34□□□□□ -1.39
CSDE1-202ENST00000339438 TESPA1A2RU30 521 aaPredicted RBP6.34□□□□□ -1.4
CSDE1-202ENST00000339438 GLTPD2A6NH11 291 aa6.34□□□□□ -1.4
CSDE1-202ENST00000339438 EIF3HO15372 352 aaKnown RBP eCLIP6.34□□□□□ -1.4
CSDE1-202ENST00000339438 ZSCAN12O43309 604 aa6.34□□□□□ -1.4
CSDE1-202ENST00000339438 WDHD1O75717 1129 aaPredicted RBP6.34□□□□□ -1.4
CSDE1-202ENST00000339438 GNAI2P04899 355 aa6.34□□□□□ -1.4
CSDE1-202ENST00000339438 CREB3L3Q68CJ9 461 aa6.34□□□□□ -1.4
CSDE1-202ENST00000339438 MAB21L3Q8N8X9 362 aa6.34□□□□□ -1.4
CSDE1-202ENST00000339438 HHIPL1Q96JK4 782 aa6.34□□□□□ -1.4
CSDE1-202ENST00000339438 BAG1Q99933 345 aaPredicted RBP6.34□□□□□ -1.4
CSDE1-202ENST00000339438 VEZTQ9HBM0 779 aa6.34□□□□□ -1.4
CSDE1-202ENST00000339438 STX10O60499 249 aa6.33□□□□□ -1.4
CSDE1-202ENST00000339438 EIF3JO75822 258 aaKnown RBP6.33□□□□□ -1.4
CSDE1-202ENST00000339438 NDUFA8P51970 172 aa6.33□□□□□ -1.4
CSDE1-202ENST00000339438 ICA1Q05084 483 aa6.33□□□□□ -1.4
CSDE1-202ENST00000339438 TBC1D25Q3MII6 688 aa6.33□□□□□ -1.4
CSDE1-202ENST00000339438 POTEDQ86YR6 584 aa6.33□□□□□ -1.4
CSDE1-202ENST00000339438 FAM177A1Q8N128 213 aaPredicted RBP6.33□□□□□ -1.4
CSDE1-202ENST00000339438 CCDC26Q8TAB7 109 aa6.33□□□□□ -1.4
CSDE1-202ENST00000339438 MAGEC3Q8TD91 643 aa6.33□□□□□ -1.4
CSDE1-202ENST00000339438 FAM163AQ96GL9 167 aaPredicted RBP6.33□□□□□ -1.4
CSDE1-202ENST00000339438 ETAA1Q9NY74 926 aa6.33□□□□□ -1.4
CSDE1-202ENST00000339438 RANBP2P49792 3224 aaKnown RBP6.33□□□□□ -1.4
CSDE1-202ENST00000339438 TMCO5BA8MYB1 307 aa6.33□□□□□ -1.4
CSDE1-202ENST00000339438 SLC27A2O14975 620 aa6.33□□□□□ -1.4
CSDE1-202ENST00000339438 NEBLO76041 1014 aa6.33□□□□□ -1.4
CSDE1-202ENST00000339438 MYBL2P10244 700 aa6.33□□□□□ -1.4
CSDE1-202ENST00000339438 RPS6KB1P23443 525 aa6.33□□□□□ -1.4
CSDE1-202ENST00000339438 GNL2Q13823 731 aaKnown RBP6.33□□□□□ -1.4
CSDE1-202ENST00000339438 BRF1Q92994 677 aa6.33□□□□□ -1.4
CSDE1-202ENST00000339438 ZSWIM4Q9H7M6 989 aa6.33□□□□□ -1.4
CSDE1-202ENST00000339438 IL1RAPL2Q9NP60 686 aa6.33□□□□□ -1.4
CSDE1-202ENST00000339438 PITPNM2Q9BZ72 1349 aa6.33□□□□□ -1.4
CSDE1-202ENST00000339438 GOLGA6L4A6NEF3 574 aa6.33□□□□□ -1.4
CSDE1-202ENST00000339438 PDE8AO60658 829 aa6.33□□□□□ -1.4
CSDE1-202ENST00000339438 PFKFB2O60825 505 aa6.33□□□□□ -1.4
CSDE1-202ENST00000339438 GGCXP38435 758 aa6.33□□□□□ -1.4
CSDE1-202ENST00000339438 NLRP12P59046 1061 aa6.33□□□□□ -1.4
CSDE1-202ENST00000339438 SPRED3Q2MJR0 410 aa6.33□□□□□ -1.4
CSDE1-202ENST00000339438 C6orf89Q6UWU4 347 aa6.33□□□□□ -1.4
CSDE1-202ENST00000339438 TMC4Q7Z404 712 aa6.33□□□□□ -1.4
CSDE1-202ENST00000339438 NKX2-3Q8TAU0 364 aa6.33□□□□□ -1.4
CSDE1-202ENST00000339438 PUF60Q9UHX1 559 aaKnown RBP6.33□□□□□ -1.4
CSDE1-202ENST00000339438 TUBE1Q9UJT0 475 aa6.33□□□□□ -1.4
CSDE1-202ENST00000339438 PCDHA7Q9UN72 937 aa6.33□□□□□ -1.4
CSDE1-202ENST00000339438 ATP5J2-PTCD1G3V325 749 aa6.32□□□□□ -1.4
CSDE1-202ENST00000339438 RAB11FIP3O75154 756 aa6.32□□□□□ -1.4
CSDE1-202ENST00000339438 POTEIP0CG38 1075 aa6.32□□□□□ -1.4
CSDE1-202ENST00000339438 POTEJP0CG39 1038 aa6.32□□□□□ -1.4
CSDE1-202ENST00000339438 BMP6P22004 513 aa6.32□□□□□ -1.4
CSDE1-202ENST00000339438 INPP5BP32019 993 aa6.32□□□□□ -1.4
CSDE1-202ENST00000339438 PDE6BP35913 854 aa6.32□□□□□ -1.4
CSDE1-202ENST00000339438 CCT4P50991 539 aaKnown RBP6.32□□□□□ -1.4
CSDE1-202ENST00000339438 SMTNP53814 917 aa6.32□□□□□ -1.4
CSDE1-202ENST00000339438 FMR1Q06787 632 aaKnown RBP eCLIP6.32□□□□□ -1.47e-7■■■■□ 24.8
CSDE1-202ENST00000339438 SLC5A9Q2M3M2 681 aa6.32□□□□□ -1.4
CSDE1-202ENST00000339438 IQCA1Q86XH1 822 aa6.32□□□□□ -1.4
CSDE1-202ENST00000339438 TCEANC2Q96MN5 208 aa6.32□□□□□ -1.4
CSDE1-202ENST00000339438 MED15Q96RN5 788 aa6.32□□□□□ -1.4
CSDE1-202ENST00000339438 CAPN7Q9Y6W3 813 aa6.32□□□□□ -1.4
CSDE1-202ENST00000339438 GOLGA6L9A6NEM1 432 aa6.32□□□□□ -1.4
CSDE1-202ENST00000339438 POTEB2H3BUK9 544 aa6.32□□□□□ -1.4
CSDE1-202ENST00000339438 FECHP22830 423 aa6.32□□□□□ -1.4
CSDE1-202ENST00000339438 LMOD1P29536 600 aaPredicted RBP6.32□□□□□ -1.4
CSDE1-202ENST00000339438 USP8P40818 1118 aa6.32□□□□□ -1.4
CSDE1-202ENST00000339438 COG1Q8WTW3 980 aa6.32□□□□□ -1.4
CSDE1-202ENST00000339438 CCDC85AQ96PX6 553 aaPredicted RBP6.32□□□□□ -1.4
CSDE1-202ENST00000339438 DESI2Q9BSY9 194 aa6.32□□□□□ -1.4
CSDE1-202ENST00000339438 TRIM6Q9C030 488 aaPredicted RBP6.32□□□□□ -1.4
CSDE1-202ENST00000339438 NAT10Q9H0A0 1025 aaKnown RBP6.32□□□□□ -1.4
CSDE1-202ENST00000339438 VCPKMTQ9H867 229 aa6.32□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms