RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 KIAA0232Q92628 1395 aa4.59□□□□□ -1.67
NEDD4-201ENST00000338963 GPR75-ASB3A0A0A6YYF3 556 aa4.59□□□□□ -1.67
NEDD4-201ENST00000338963 ANKRD65E5RJM6 399 aa4.59□□□□□ -1.67
NEDD4-201ENST00000338963 ANP32DO95626 131 aa4.59□□□□□ -1.67
NEDD4-201ENST00000338963 BIRC3Q13489 604 aa4.59□□□□□ -1.67
NEDD4-201ENST00000338963 LARP1BQ659C4 914 aaKnown RBP4.59□□□□□ -1.67
NEDD4-201ENST00000338963 PHLDB3Q6NSJ2 640 aa4.59□□□□□ -1.67
NEDD4-201ENST00000338963 TUBGCP5Q96RT8 1024 aa4.59□□□□□ -1.67
NEDD4-201ENST00000338963 HAUS2Q9NVX0 235 aa4.59□□□□□ -1.67
NEDD4-201ENST00000338963 STOML1Q9UBI4 398 aa4.59□□□□□ -1.67
NEDD4-201ENST00000338963 PPME1Q9Y570 386 aa4.59□□□□□ -1.67
NEDD4-201ENST00000338963 ASB3Q9Y575 518 aa4.59□□□□□ -1.67
NEDD4-201ENST00000338963 WNT7AO00755 349 aa4.59□□□□□ -1.67
NEDD4-201ENST00000338963 MEX3CQ5U5Q3 659 aaKnown RBP4.59□□□□□ -1.67
NEDD4-201ENST00000338963 WDR75Q8IWA0 830 aaKnown RBP4.59□□□□□ -1.67
NEDD4-201ENST00000338963 CD302Q8IX05 232 aa4.59□□□□□ -1.67
NEDD4-201ENST00000338963 ENAHQ8N8S7 591 aaPredicted RBP4.59□□□□□ -1.67
NEDD4-201ENST00000338963 CORO1BQ9BR76 489 aa4.59□□□□□ -1.67
NEDD4-201ENST00000338963 KRT23Q9C075 422 aa4.59□□□□□ -1.67
NEDD4-201ENST00000338963 CCDC87Q9NVE4 849 aa4.59□□□□□ -1.67
NEDD4-201ENST00000338963 SEL1LQ9UBV2 794 aa4.59□□□□□ -1.67
NEDD4-201ENST00000338963 USP16Q9Y5T5 823 aa4.59□□□□□ -1.67
NEDD4-201ENST00000338963 BTBD19C9JJ37 291 aa4.59□□□□□ -1.68
NEDD4-201ENST00000338963 SSBP05455 408 aaKnown RBP eCLIP4.59□□□□□ -1.68
NEDD4-201ENST00000338963 MMEP08473 750 aa4.59□□□□□ -1.68
NEDD4-201ENST00000338963 POTEJP0CG39 1038 aa4.59□□□□□ -1.68
NEDD4-201ENST00000338963 PDHBP11177 359 aa4.59□□□□□ -1.68
NEDD4-201ENST00000338963 CCNCP24863 283 aa4.59□□□□□ -1.68
NEDD4-201ENST00000338963 KPNB1Q14974 876 aaKnown RBP4.59□□□□□ -1.68
NEDD4-201ENST00000338963 CAMK4Q16566 473 aa4.59□□□□□ -1.68
NEDD4-201ENST00000338963 VSTM4Q8IW00 320 aa4.59□□□□□ -1.68
NEDD4-201ENST00000338963 PANX2Q96RD6 677 aa4.59□□□□□ -1.68
NEDD4-201ENST00000338963 GDPD2Q9HCC8 539 aa4.59□□□□□ -1.68
NEDD4-201ENST00000338963 PCSK1NQ9UHG2 260 aa4.59□□□□□ -1.68
NEDD4-201ENST00000338963 WWC3Q9ULE0 1092 aa4.59□□□□□ -1.68
NEDD4-201ENST00000338963 NUTM2FA1L443 756 aa4.58□□□□□ -1.68
NEDD4-201ENST00000338963 TMEM247A6NEH6 219 aa4.58□□□□□ -1.68
NEDD4-201ENST00000338963 MARCH6O60337 910 aa4.58□□□□□ -1.68
NEDD4-201ENST00000338963 HNRNPCL1O60812 293 aaKnown RBP4.58□□□□□ -1.68
NEDD4-201ENST00000338963 LINGO3P0C6S8 592 aa4.58□□□□□ -1.68
NEDD4-201ENST00000338963 POTEIP0CG38 1075 aa4.58□□□□□ -1.68
NEDD4-201ENST00000338963 EIF2S2P20042 333 aaKnown RBP4.58□□□□□ -1.68
NEDD4-201ENST00000338963 CALB2P22676 271 aa4.58□□□□□ -1.68
NEDD4-201ENST00000338963 GGCXP38435 758 aa4.58□□□□□ -1.68
NEDD4-201ENST00000338963 MDH1P40925 334 aaKnown RBP4.58□□□□□ -1.68
NEDD4-201ENST00000338963 EPS15P42566 896 aa4.58□□□□□ -1.68
NEDD4-201ENST00000338963 CLCN2P51788 898 aa4.58□□□□□ -1.68
NEDD4-201ENST00000338963 PAK2Q13177 524 aa4.58□□□□□ -1.68
NEDD4-201ENST00000338963 TSR1Q2NL82 804 aaKnown RBP4.58□□□□□ -1.68
NEDD4-201ENST00000338963 TRIM65Q6PJ69 517 aa4.58□□□□□ -1.68
NEDD4-201ENST00000338963 CPLX4Q7Z7G2 160 aa4.58□□□□□ -1.68
NEDD4-201ENST00000338963 ALDH16A1Q8IZ83 802 aa4.58□□□□□ -1.68
NEDD4-201ENST00000338963 CLMNQ96JQ2 1002 aa4.58□□□□□ -1.68
NEDD4-201ENST00000338963 CCT7Q99832 543 aa4.58□□□□□ -1.68
NEDD4-201ENST00000338963 SDF4Q9BRK5 362 aa4.58□□□□□ -1.68
NEDD4-201ENST00000338963 OSBPL10Q9BXB5 764 aa4.58□□□□□ -1.68
NEDD4-201ENST00000338963 RABL2AQ9UBK7 228 aaPredicted RBP4.58□□□□□ -1.68
NEDD4-201ENST00000338963 FADS3Q9Y5Q0 445 aa4.58□□□□□ -1.68
NEDD4-201ENST00000338963 SMIM31A0A1B0GVY4 71 aa4.58□□□□□ -1.68
NEDD4-201ENST00000338963 TCF7P36402 384 aaPredicted RBP4.58□□□□□ -1.68
NEDD4-201ENST00000338963 BASP1P80723 227 aaKnown RBP4.58□□□□□ -1.68
NEDD4-201ENST00000338963 AIMP1Q12904 312 aaKnown RBP4.58□□□□□ -1.68
NEDD4-201ENST00000338963 RASGRF1Q13972 1273 aa4.58□□□□□ -1.68
NEDD4-201ENST00000338963 WTAPQ15007 396 aa4.58□□□□□ -1.68
NEDD4-201ENST00000338963 CCDC102BQ68D86 513 aa4.58□□□□□ -1.68
NEDD4-201ENST00000338963 TMTC1Q8IUR5 882 aa4.58□□□□□ -1.68
NEDD4-201ENST00000338963 ST13P4Q8IZP2 240 aaPredicted RBP4.58□□□□□ -1.68
NEDD4-201ENST00000338963 NSUN7Q8NE18 718 aaKnown RBP4.58□□□□□ -1.68
NEDD4-201ENST00000338963 CCT8L2Q96SF2 557 aa4.58□□□□□ -1.68
NEDD4-201ENST00000338963 RSPH9Q9H1X1 276 aaPredicted RBP4.58□□□□□ -1.68
NEDD4-201ENST00000338963 CCDC68Q9H2F9 335 aa4.58□□□□□ -1.68
NEDD4-201ENST00000338963 EIF4ENIF1Q9NRA8 985 aaKnown RBP4.58□□□□□ -1.68
NEDD4-201ENST00000338963 SCAF8Q9UPN6 1271 aaKnown RBP4.58□□□□□ -1.68
NEDD4-201ENST00000338963 SAMM50Q9Y512 469 aa4.58□□□□□ -1.68
NEDD4-201ENST00000338963 ADGRL1O94910 1474 aa4.58□□□□□ -1.68
NEDD4-201ENST00000338963 ATAD2BQ9ULI0 1458 aa4.58□□□□□ -1.68
NEDD4-201ENST00000338963 MSH6P52701 1360 aa4.58□□□□□ -1.68
NEDD4-201ENST00000338963 GMNCA6NCL1 334 aa4.58□□□□□ -1.68
NEDD4-201ENST00000338963 ERCC5P28715 1186 aaPredicted RBP4.58□□□□□ -1.68
NEDD4-201ENST00000338963 SCTRP47872 440 aa4.58□□□□□ -1.68
NEDD4-201ENST00000338963 ATP8B2P98198 1209 aa4.58□□□□□ -1.68
NEDD4-201ENST00000338963 PLCB3Q01970 1234 aa4.58□□□□□ -1.68
NEDD4-201ENST00000338963 IMMTQ16891 758 aaKnown RBP4.58□□□□□ -1.68
NEDD4-201ENST00000338963 CNGA4Q8IV77 575 aa4.58□□□□□ -1.68
NEDD4-201ENST00000338963 PPIL4Q8WUA2 492 aaKnown RBP eCLIP4.58□□□□□ -1.68
NEDD4-201ENST00000338963 NECTIN2Q92692 538 aa4.58□□□□□ -1.68
NEDD4-201ENST00000338963 TM6SF1Q9BZW5 370 aa4.58□□□□□ -1.68
NEDD4-201ENST00000338963 SENP2Q9HC62 589 aa4.58□□□□□ -1.68
NEDD4-201ENST00000338963 RNF14Q9UBS8 474 aa4.58□□□□□ -1.68
NEDD4-201ENST00000338963 NPATQ14207 1427 aa4.58□□□□□ -1.68
NEDD4-201ENST00000338963 C9orf84Q5VXU9 1444 aa4.58□□□□□ -1.68
NEDD4-201ENST00000338963 A0A1W2PQ27 194 aa4.58□□□□□ -1.68
NEDD4-201ENST00000338963 A0A1W2PQ64 194 aa4.58□□□□□ -1.68
NEDD4-201ENST00000338963 A0A1W2PQD8 194 aa4.58□□□□□ -1.68
NEDD4-201ENST00000338963 VWA3AA6NCI4 1184 aa4.58□□□□□ -1.68
NEDD4-201ENST00000338963 C5orf60A6NFR6 353 aa4.58□□□□□ -1.68
NEDD4-201ENST00000338963 ALDH1L1O75891 902 aa4.58□□□□□ -1.68
NEDD4-201ENST00000338963 RHOXF2BP0C7M4 288 aa4.58□□□□□ -1.68
NEDD4-201ENST00000338963 GUCY2FP51841 1108 aa4.58□□□□□ -1.68
NEDD4-201ENST00000338963 OXCT1P55809 520 aa4.58□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms