RNA–Protein interactions for RNA: ENST00000330503.11

DDX41-201, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 2,137 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-201ENST00000330503 BLIDQ8IZY5 108 aa19.45■□□□□ 0.7
DDX41-201ENST00000330503 LRRC47Q8N1G4 583 aaKnown RBP19.45■□□□□ 0.7
DDX41-201ENST00000330503 BARHL2Q9NY43 387 aa19.45■□□□□ 0.7
DDX41-201ENST00000330503 PI4KBQ9UBF8 816 aa19.45■□□□□ 0.7
DDX41-201ENST00000330503 PCDHA4Q9UN74 947 aa19.45■□□□□ 0.7
DDX41-201ENST00000330503 CEP131Q9UPN4 1083 aa19.45■□□□□ 0.7
DDX41-201ENST00000330503 GREB1LQ9C091 1923 aaPredicted RBP19.44■□□□□ 0.7
DDX41-201ENST00000330503 FAM196BA6NMK8 535 aa19.44■□□□□ 0.7
DDX41-201ENST00000330503 M0R2N6 131 aa19.44■□□□□ 0.7
DDX41-201ENST00000330503 TTLL1O95922 423 aa19.44■□□□□ 0.7
DDX41-201ENST00000330503 SNHG28P0DPA3 235 aa19.44■□□□□ 0.7
DDX41-201ENST00000330503 TGFB2P61812 414 aa19.44■□□□□ 0.7
DDX41-201ENST00000330503 LUZP1Q86V48 1076 aa19.44■□□□□ 0.7
DDX41-201ENST00000330503 ZNF579Q8NAF0 562 aaKnown RBP19.44■□□□□ 0.7
DDX41-201ENST00000330503 TRIM44Q96DX7 344 aaPredicted RBP19.44■□□□□ 0.7
DDX41-201ENST00000330503 KIAA1468Q9P260 1216 aa19.44■□□□□ 0.7
DDX41-201ENST00000330503 ZNF174Q15697 407 aa19.43■□□□□ 0.7
DDX41-201ENST00000330503 PIK3AP1Q6ZUJ8 805 aa19.43■□□□□ 0.7
DDX41-201ENST00000330503 CCDC17Q96LX7 622 aa19.43■□□□□ 0.7
DDX41-201ENST00000330503 VPS33BQ9H267 617 aa19.43■□□□□ 0.7
DDX41-201ENST00000330503 PIM2Q9P1W9 311 aa19.43■□□□□ 0.7
DDX41-201ENST00000330503 NOL7Q9UMY1 257 aaKnown RBP19.43■□□□□ 0.7
DDX41-201ENST00000330503 STX1AQ16623 288 aa19.43■□□□□ 0.7
DDX41-201ENST00000330503 SHROOM1Q2M3G4 852 aaPredicted RBP19.43■□□□□ 0.7
DDX41-201ENST00000330503 TTC38Q5R3I4 469 aa19.43■□□□□ 0.7
DDX41-201ENST00000330503 C11orf57Q6ZUT1 292 aaPredicted RBP19.43■□□□□ 0.7
DDX41-201ENST00000330503 HEATR3Q7Z4Q2 680 aa19.43■□□□□ 0.7
DDX41-201ENST00000330503 UBA5Q9GZZ9 404 aa19.43■□□□□ 0.7
DDX41-201ENST00000330503 RIOX1Q9H6W3 641 aa19.43■□□□□ 0.7
DDX41-201ENST00000330503 KCNH3Q9ULD8 1083 aa19.43■□□□□ 0.7
DDX41-201ENST00000330503 ADCY5O95622 1261 aa19.42■□□□□ 0.7
DDX41-201ENST00000330503 ZNF165P49910 485 aa19.42■□□□□ 0.7
DDX41-201ENST00000330503 LONRF3Q496Y0 759 aa19.42■□□□□ 0.7
DDX41-201ENST00000330503 TATDN1Q6P1N9 297 aa19.42■□□□□ 0.7
DDX41-201ENST00000330503 METTL16Q86W50 562 aaKnown RBP19.42■□□□□ 0.7
DDX41-201ENST00000330503 FOXP4Q8IVH2 680 aaPredicted RBP19.42■□□□□ 0.7
DDX41-201ENST00000330503 ZSCAN29Q8IWY8 852 aaPredicted RBP19.42■□□□□ 0.7
DDX41-201ENST00000330503 DAGLBQ8NCG7 672 aa19.42■□□□□ 0.7
DDX41-201ENST00000330503 FRMPD2Q68DX3 1309 aaPredicted RBP19.42■□□□□ 0.7
DDX41-201ENST00000330503 MPHOSPH10O00566 681 aaKnown RBP19.42■□□□□ 0.7
DDX41-201ENST00000330503 ENTPD3O75355 529 aa19.42■□□□□ 0.7
DDX41-201ENST00000330503 VAT1LQ9HCJ6 419 aa19.42■□□□□ 0.7
DDX41-201ENST00000330503 CAVIN2O95810 425 aa19.41■□□□□ 0.7
DDX41-201ENST00000330503 TRAPPC10P48553 1259 aa19.41■□□□□ 0.7
DDX41-201ENST00000330503 IQCB1Q15051 598 aa19.41■□□□□ 0.7
DDX41-201ENST00000330503 FAM43AQ8N2R8 423 aa19.41■□□□□ 0.7
DDX41-201ENST00000330503 RASGRP4Q8TDF6 673 aa19.41■□□□□ 0.7
DDX41-201ENST00000330503 RRP36Q96EU6 259 aaKnown RBP19.41■□□□□ 0.7
DDX41-201ENST00000330503 PIGSQ96S52 555 aa19.41■□□□□ 0.7
DDX41-201ENST00000330503 CSRNP2Q9H175 543 aa19.41■□□□□ 0.7
DDX41-201ENST00000330503 RRAGDQ9NQL2 400 aaPredicted RBP19.41■□□□□ 0.7
DDX41-201ENST00000330503 PCDHA6Q9UN73 950 aa19.41■□□□□ 0.7
DDX41-201ENST00000330503 ZBTB12Q9Y330 459 aaPredicted RBP19.41■□□□□ 0.7
DDX41-201ENST00000330503 PCDHA8Q9Y5H6 950 aa19.41■□□□□ 0.7
DDX41-201ENST00000330503 SPDYE2BA6NHP3 402 aa19.4■□□□□ 0.7
DDX41-201ENST00000330503 SPDYE6P0CI01 402 aa19.4■□□□□ 0.7
DDX41-201ENST00000330503 CERKLQ49MI3 558 aaPredicted RBP19.4■□□□□ 0.7
DDX41-201ENST00000330503 ASPRV1Q53RT3 343 aa19.4■□□□□ 0.7
DDX41-201ENST00000330503 SOGA3Q5TF21 947 aa19.4■□□□□ 0.7
DDX41-201ENST00000330503 GALNT17Q6IS24 598 aa19.4■□□□□ 0.7
DDX41-201ENST00000330503 USP49Q70CQ1 688 aa19.4■□□□□ 0.7
DDX41-201ENST00000330503 FAM177A1Q8N128 213 aaPredicted RBP19.4■□□□□ 0.7
DDX41-201ENST00000330503 ANO10Q9NW15 660 aa19.4■□□□□ 0.7
DDX41-201ENST00000330503 ZNRF3Q9ULT6 936 aa19.4■□□□□ 0.7
DDX41-201ENST00000330503 ATRNL1Q5VV63 1379 aa19.4■□□□□ 0.7
DDX41-201ENST00000330503 BMP15O95972 392 aa19.4■□□□□ 0.7
DDX41-201ENST00000330503 HS1BP3Q53T59 392 aa19.4■□□□□ 0.7
DDX41-201ENST00000330503 CCDC148Q8NFR7 591 aa19.4■□□□□ 0.7
DDX41-201ENST00000330503 MTFR1LQ9H019 292 aa19.4■□□□□ 0.7
DDX41-201ENST00000330503 ZNF543Q08ER8 600 aa19.39■□□□□ 0.69
DDX41-201ENST00000330503 KRBA2Q6ZNG9 492 aa19.39■□□□□ 0.69
DDX41-201ENST00000330503 HOMER1Q86YM7 354 aa19.39■□□□□ 0.69
DDX41-201ENST00000330503 SIAH1Q8IUQ4 282 aa19.39■□□□□ 0.69
DDX41-201ENST00000330503 MKL1Q969V6 931 aa19.39■□□□□ 0.69
DDX41-201ENST00000330503 ZMYND12Q9H0C1 365 aa19.39■□□□□ 0.69
DDX41-201ENST00000330503 GPCPD1Q9NPB8 672 aa19.39■□□□□ 0.69
DDX41-201ENST00000330503 FAM13BQ9NYF5 915 aa19.39■□□□□ 0.69
DDX41-201ENST00000330503 POLD1P28340 1107 aa19.39■□□□□ 0.69
DDX41-201ENST00000330503 ATP2C1P98194 919 aaPredicted RBP19.39■□□□□ 0.69
DDX41-201ENST00000330503 MDM2Q00987 491 aaPredicted RBP19.39■□□□□ 0.69
DDX41-201ENST00000330503 PTGDRQ13258 359 aa19.39■□□□□ 0.69
DDX41-201ENST00000330503 DALRD3Q5D0E6 543 aaKnown RBP19.39■□□□□ 0.69
DDX41-201ENST00000330503 C4orf32Q8N8J7 132 aa19.39■□□□□ 0.69
DDX41-201ENST00000330503 GOLGB1Q14789 3259 aaKnown RBP19.39■□□□□ 0.69
DDX41-201ENST00000330503 ATP2B2Q01814 1243 aa19.38■□□□□ 0.69
DDX41-201ENST00000330503 RTN4Q9NQC3 1192 aaKnown RBP19.38■□□□□ 0.69
DDX41-201ENST00000330503 ZNF70Q9UC06 446 aaPredicted RBP19.38■□□□□ 0.69
DDX41-201ENST00000330503 TUBE1Q9UJT0 475 aa19.38■□□□□ 0.69
DDX41-201ENST00000330503 JAG1P78504 1218 aa19.37■□□□□ 0.69
DDX41-201ENST00000330503 TTBK2Q6IQ55 1244 aa19.37■□□□□ 0.69
DDX41-201ENST00000330503 NIM1KQ8IY84 436 aa19.37■□□□□ 0.69
DDX41-201ENST00000330503 ELOA2Q8IYF1 753 aaPredicted RBP19.37■□□□□ 0.69
DDX41-201ENST00000330503 FERMT2Q96AC1 680 aa19.37■□□□□ 0.69
DDX41-201ENST00000330503 NYAP2Q9P242 653 aa19.37■□□□□ 0.69
DDX41-201ENST00000330503 COL2A1P02458 1487 aaPredicted RBP19.37■□□□□ 0.69
DDX41-201ENST00000330503 MYH4Q9Y623 1939 aa19.37■□□□□ 0.69
DDX41-201ENST00000330503 ESPNB1AK53 854 aa19.37■□□□□ 0.69
DDX41-201ENST00000330503 POLR2DO15514 142 aaKnown RBP19.37■□□□□ 0.69
DDX41-201ENST00000330503 EEF2P13639 858 aaKnown RBP19.37■□□□□ 0.69
DDX41-201ENST00000330503 NAPAP54920 295 aa19.37■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms