RNA–Protein interactions for RNA: ENST00000329399.6

PDLIM1-201, Transcript of PDZ and LIM domain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM1, Length 1,452 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1-201ENST00000329399 IL17RBQ9NRM6 502 aa19.24■□□□□ 0.67
PDLIM1-201ENST00000329399 PNMA3Q9UL41 463 aa19.24■□□□□ 0.67
PDLIM1-201ENST00000329399 CCDC85CA6NKD9 419 aa19.23■□□□□ 0.67
PDLIM1-201ENST00000329399 USP17L15C9J2P7 530 aa19.23■□□□□ 0.67
PDLIM1-201ENST00000329399 USP17L13C9JLJ4 530 aa19.23■□□□□ 0.67
PDLIM1-201ENST00000329399 USP17L11C9JVI0 530 aa19.23■□□□□ 0.67
PDLIM1-201ENST00000329399 USP17L18D6R9N7 530 aa19.23■□□□□ 0.67
PDLIM1-201ENST00000329399 USP17L22D6RA61 530 aa19.23■□□□□ 0.67
PDLIM1-201ENST00000329399 USP17L17D6RBQ6 530 aa19.23■□□□□ 0.67
PDLIM1-201ENST00000329399 USP17L19D6RCP7 530 aa19.23■□□□□ 0.67
PDLIM1-201ENST00000329399 USP17L20D6RJB6 530 aa19.23■□□□□ 0.67
PDLIM1-201ENST00000329399 EXOSC10Q01780 885 aaKnown RBP19.23■□□□□ 0.67
PDLIM1-201ENST00000329399 PDE4BQ07343 736 aa19.23■□□□□ 0.67
PDLIM1-201ENST00000329399 USP17L24Q0WX57 530 aa19.23■□□□□ 0.67
PDLIM1-201ENST00000329399 PABPC4Q13310 644 aaKnown RBP eCLIP19.23■□□□□ 0.671e-7■■■■□ 24.2
PDLIM1-201ENST00000329399 PKN2Q16513 984 aaKnown RBP19.23■□□□□ 0.67
PDLIM1-201ENST00000329399 SPRYD3Q8NCJ5 442 aa19.23■□□□□ 0.67
PDLIM1-201ENST00000329399 NEDD1Q8NHV4 660 aa19.23■□□□□ 0.67
PDLIM1-201ENST00000329399 MTA3Q9BTC8 594 aa19.23■□□□□ 0.67
PDLIM1-201ENST00000329399 ANP32EQ9BTT0 268 aa19.23■□□□□ 0.67
PDLIM1-201ENST00000329399 AGXT2Q9BYV1 514 aa19.23■□□□□ 0.67
PDLIM1-201ENST00000329399 VCPKMTQ9H867 229 aa19.23■□□□□ 0.67
PDLIM1-201ENST00000329399 MTMR4Q9NYA4 1195 aa19.23■□□□□ 0.67
PDLIM1-201ENST00000329399 CLIP2Q9UDT6 1046 aa19.23■□□□□ 0.67
PDLIM1-201ENST00000329399 GABRQQ9UN88 632 aa19.23■□□□□ 0.67
PDLIM1-201ENST00000329399 PTCH2Q9Y6C5 1203 aa19.23■□□□□ 0.67
PDLIM1-201ENST00000329399 FMNL1O95466 1100 aaPredicted RBP19.22■□□□□ 0.67
PDLIM1-201ENST00000329399 PTMSP20962 102 aa19.22■□□□□ 0.67
PDLIM1-201ENST00000329399 RALYLQ86SE5 291 aaKnown RBP19.22■□□□□ 0.67
PDLIM1-201ENST00000329399 NUP88Q99567 741 aaPredicted RBP19.22■□□□□ 0.67
PDLIM1-201ENST00000329399 RNF41Q9H4P4 317 aaPredicted RBP19.22■□□□□ 0.67
PDLIM1-201ENST00000329399 ARHGEF10LQ9HCE6 1279 aa19.22■□□□□ 0.67
PDLIM1-201ENST00000329399 LAMA4Q16363 1823 aa19.22■□□□□ 0.67
PDLIM1-201ENST00000329399 MCM5P33992 734 aa19.22■□□□□ 0.67
PDLIM1-201ENST00000329399 GCLCP48506 637 aaPredicted RBP19.22■□□□□ 0.67
PDLIM1-201ENST00000329399 FAM110CQ1W6H9 321 aa19.22■□□□□ 0.67
PDLIM1-201ENST00000329399 FBXO28Q9NVF7 368 aa19.22■□□□□ 0.67
PDLIM1-201ENST00000329399 BTBD7Q9P203 1132 aa19.22■□□□□ 0.67
PDLIM1-201ENST00000329399 NYAP2Q9P242 653 aa19.22■□□□□ 0.67
PDLIM1-201ENST00000329399 MORF4L1Q9UBU8 362 aa19.22■□□□□ 0.67
PDLIM1-201ENST00000329399 SPDYE16A6NNV3 312 aaPredicted RBP19.21■□□□□ 0.67
PDLIM1-201ENST00000329399 ORC4O43929 436 aa19.21■□□□□ 0.67
PDLIM1-201ENST00000329399 RANBP6O60518 1105 aaKnown RBP19.21■□□□□ 0.67
PDLIM1-201ENST00000329399 TSPY3P0CV98 308 aa19.21■□□□□ 0.67
PDLIM1-201ENST00000329399 TSPY8P0CW00 308 aa19.21■□□□□ 0.67
PDLIM1-201ENST00000329399 KIF22Q14807 665 aa19.21■□□□□ 0.67
PDLIM1-201ENST00000329399 PAGR1Q9BTK6 254 aa19.21■□□□□ 0.67
PDLIM1-201ENST00000329399 PORCNQ9H237 461 aa19.21■□□□□ 0.67
PDLIM1-201ENST00000329399 TAF6LQ9Y6J9 622 aa19.21■□□□□ 0.67
PDLIM1-201ENST00000329399 RLFQ13129 1914 aa19.2■□□□□ 0.66
PDLIM1-201ENST00000329399 KIAA0100Q14667 2235 aaKnown RBP19.2■□□□□ 0.66
PDLIM1-201ENST00000329399 RAD21O60216 631 aa19.2■□□□□ 0.66
PDLIM1-201ENST00000329399 SLC3A2P08195 630 aaKnown RBP19.2■□□□□ 0.66
PDLIM1-201ENST00000329399 FGD1P98174 961 aa19.2■□□□□ 0.66
PDLIM1-201ENST00000329399 PRKCZQ05513 592 aa19.2■□□□□ 0.66
PDLIM1-201ENST00000329399 RRP12Q5JTH9 1297 aaKnown RBP19.2■□□□□ 0.66
PDLIM1-201ENST00000329399 CLEC17AQ6ZS10 378 aa19.2■□□□□ 0.66
PDLIM1-201ENST00000329399 LRRC47Q8N1G4 583 aaKnown RBP19.2■□□□□ 0.66
PDLIM1-201ENST00000329399 MKL1Q969V6 931 aa19.2■□□□□ 0.66
PDLIM1-201ENST00000329399 GBP4Q96PP9 640 aa19.2■□□□□ 0.66
PDLIM1-201ENST00000329399 KRT23Q9C075 422 aa19.2■□□□□ 0.66
PDLIM1-201ENST00000329399 TANGO6Q9C0B7 1094 aa19.2■□□□□ 0.66
PDLIM1-201ENST00000329399 ZNF287Q9HBT7 754 aa19.2■□□□□ 0.66
PDLIM1-201ENST00000329399 SRRDQ9UH36 339 aa19.2■□□□□ 0.66
PDLIM1-201ENST00000329399 F5H6K3 240 aa19.19■□□□□ 0.66
PDLIM1-201ENST00000329399 NDUFB10O96000 172 aa19.19■□□□□ 0.66
PDLIM1-201ENST00000329399 EVCP57679 992 aa19.19■□□□□ 0.66
PDLIM1-201ENST00000329399 KLRC3Q07444 240 aa19.19■□□□□ 0.66
PDLIM1-201ENST00000329399 TOB2Q14106 344 aaPredicted RBP19.19■□□□□ 0.66
PDLIM1-201ENST00000329399 FAM83BQ5T0W9 1011 aa19.19■□□□□ 0.66
PDLIM1-201ENST00000329399 AKNAD1Q5T1N1 836 aa19.19■□□□□ 0.66
PDLIM1-201ENST00000329399 STOX1Q6ZVD7 989 aa19.19■□□□□ 0.66
PDLIM1-201ENST00000329399 RASGRP2Q7LDG7 609 aa19.19■□□□□ 0.66
PDLIM1-201ENST00000329399 ZNF274Q96GC6 653 aaPredicted RBP19.19■□□□□ 0.66
PDLIM1-201ENST00000329399 NEDD4P46934 1319 aa19.19■□□□□ 0.66
PDLIM1-201ENST00000329399 PLIN4Q96Q06 1357 aa19.19■□□□□ 0.66
PDLIM1-201ENST00000329399 FCGRTP55899 365 aa19.18■□□□□ 0.66
PDLIM1-201ENST00000329399 ERVK-9P63128 1117 aa19.18■□□□□ 0.66
PDLIM1-201ENST00000329399 ERVK-24P63145 666 aa19.18■□□□□ 0.66
PDLIM1-201ENST00000329399 COG2Q14746 738 aa19.18■□□□□ 0.66
PDLIM1-201ENST00000329399 NFKBIBQ15653 356 aa19.18■□□□□ 0.66
PDLIM1-201ENST00000329399 SAMD1Q6SPF0 538 aaPredicted RBP19.18■□□□□ 0.66
PDLIM1-201ENST00000329399 Q6ZUG5 572 aa19.18■□□□□ 0.66
PDLIM1-201ENST00000329399 GPRC5AQ8NFJ5 357 aa19.18■□□□□ 0.66
PDLIM1-201ENST00000329399 SH3TC2Q8TF17 1288 aa19.18■□□□□ 0.66
PDLIM1-201ENST00000329399 STAG1Q8WVM7 1258 aa19.18■□□□□ 0.66
PDLIM1-201ENST00000329399 LPAR1Q92633 364 aa19.18■□□□□ 0.66
PDLIM1-201ENST00000329399 TOMM22Q9NS69 142 aa19.18■□□□□ 0.66
PDLIM1-201ENST00000329399 GJD2Q9UKL4 321 aa19.18■□□□□ 0.66
PDLIM1-201ENST00000329399 TSPY2A6NKD2 308 aa19.17■□□□□ 0.66
PDLIM1-201ENST00000329399 TTLL1O95922 423 aa19.17■□□□□ 0.66
PDLIM1-201ENST00000329399 CPA1P15085 419 aa19.17■□□□□ 0.66
PDLIM1-201ENST00000329399 DSG3P32926 999 aa19.17■□□□□ 0.66
PDLIM1-201ENST00000329399 LBX2Q6XYB7 198 aa19.17■□□□□ 0.66
PDLIM1-201ENST00000329399 MB21D2Q8IYB1 491 aaPredicted RBP19.17■□□□□ 0.66
PDLIM1-201ENST00000329399 ATG4CQ96DT6 458 aa19.17■□□□□ 0.66
PDLIM1-201ENST00000329399 TMEM87BQ96K49 555 aa19.17■□□□□ 0.66
PDLIM1-201ENST00000329399 LLPHQ9BRT6 129 aaKnown RBP19.17■□□□□ 0.66
PDLIM1-201ENST00000329399 SMC3Q9UQE7 1217 aa19.17■□□□□ 0.66
PDLIM1-201ENST00000329399 MGAMO43451 1857 aa19.17■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms