RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 TYW1BQ6NUM6 668 aa16.44■□□□□ 0.22
TCOF1-201ENST00000323668 NBPF10Q6P3W6 841 aaKnown RBP16.44■□□□□ 0.22
TCOF1-201ENST00000323668 DYMQ7RTS9 669 aa16.44■□□□□ 0.22
TCOF1-201ENST00000323668 SYCP3Q8IZU3 236 aa16.44■□□□□ 0.22
TCOF1-201ENST00000323668 NBPF15Q8N660 670 aa16.44■□□□□ 0.22
TCOF1-201ENST00000323668 PNMA1Q8ND90 353 aa16.44■□□□□ 0.22
TCOF1-201ENST00000323668 WDR66Q8TBY9 1149 aa16.44■□□□□ 0.22
TCOF1-201ENST00000323668 A6NNZ2 444 aa16.44■□□□□ 0.22
TCOF1-201ENST00000323668 RASGRF1Q13972 1273 aa16.44■□□□□ 0.22
TCOF1-201ENST00000323668 INF2Q27J81 1249 aa16.44■□□□□ 0.22
TCOF1-201ENST00000323668 TUBB8Q3ZCM7 444 aa16.44■□□□□ 0.22
TCOF1-201ENST00000323668 ZNF579Q8NAF0 562 aaKnown RBP16.44■□□□□ 0.22
TCOF1-201ENST00000323668 KIF20BQ96Q89 1820 aa16.44■□□□□ 0.22
TCOF1-201ENST00000323668 PPFIA1Q13136 1202 aa16.44■□□□□ 0.22
TCOF1-201ENST00000323668 SCARF1Q14162 830 aa16.44■□□□□ 0.22
TCOF1-201ENST00000323668 IFT20Q8IY31 132 aa16.44■□□□□ 0.22
TCOF1-201ENST00000323668 GOLGA5Q8TBA6 731 aa16.44■□□□□ 0.22
TCOF1-201ENST00000323668 TBC1D5Q92609 795 aa16.44■□□□□ 0.22
TCOF1-201ENST00000323668 STK36Q9NRP7 1315 aa16.44■□□□□ 0.22
TCOF1-201ENST00000323668 NDUFAB1O14561 156 aa16.44■□□□□ 0.22
TCOF1-201ENST00000323668 IL6STP40189 918 aaPredicted RBP16.44■□□□□ 0.22
TCOF1-201ENST00000323668 CETN2P41208 172 aa16.44■□□□□ 0.22
TCOF1-201ENST00000323668 FAM71BQ8TC56 605 aa16.44■□□□□ 0.22
TCOF1-201ENST00000323668 PAGE5Q96GU1 130 aa16.44■□□□□ 0.22
TCOF1-201ENST00000323668 TMEM94Q12767 1356 aa16.43■□□□□ 0.22
TCOF1-201ENST00000323668 IBSPP21815 317 aaPredicted RBP16.43■□□□□ 0.22
TCOF1-201ENST00000323668 SSR1P43307 286 aaKnown RBP16.43■□□□□ 0.22
TCOF1-201ENST00000323668 RRAGAQ7L523 313 aa16.43■□□□□ 0.22
TCOF1-201ENST00000323668 ACRBPQ8NEB7 543 aa16.43■□□□□ 0.22
TCOF1-201ENST00000323668 EEF2KMTQ96G04 330 aa16.43■□□□□ 0.22
TCOF1-201ENST00000323668 NGLY1Q96IV0 654 aa16.43■□□□□ 0.22
TCOF1-201ENST00000323668 SLAIN2Q9P270 581 aa16.43■□□□□ 0.22
TCOF1-201ENST00000323668 FDPSP14324 419 aaKnown RBP16.43■□□□□ 0.22
TCOF1-201ENST00000323668 ERCC3P19447 782 aa16.43■□□□□ 0.22
TCOF1-201ENST00000323668 RPS8P62241 208 aaKnown RBP16.43■□□□□ 0.22
TCOF1-201ENST00000323668 SNX29Q8TEQ0 813 aa16.43■□□□□ 0.22
TCOF1-201ENST00000323668 F8W031 263 aaPredicted RBP16.43■□□□□ 0.22
TCOF1-201ENST00000323668 INCENPQ9NQS7 918 aa16.43■□□□□ 0.22
TCOF1-201ENST00000323668 ZSCAN20P17040 1043 aaPredicted RBP16.43■□□□□ 0.22
TCOF1-201ENST00000323668 TOGARAM2Q6ZUX3 1019 aa16.43■□□□□ 0.22
TCOF1-201ENST00000323668 GPIHBP1Q8IV16 184 aa16.43■□□□□ 0.22
TCOF1-201ENST00000323668 SEC31BQ9NQW1 1179 aa16.43■□□□□ 0.22
TCOF1-201ENST00000323668 NPHP4O75161 1426 aaPredicted RBP16.43■□□□□ 0.22
TCOF1-201ENST00000323668 CLTCQ00610 1675 aaKnown RBP16.42■□□□□ 0.22
TCOF1-201ENST00000323668 PRPF3O43395 683 aaKnown RBP16.42■□□□□ 0.22
TCOF1-201ENST00000323668 ST3GAL1Q11201 340 aa16.42■□□□□ 0.22
TCOF1-201ENST00000323668 CFAP221Q4G0U5 840 aa16.42■□□□□ 0.22
TCOF1-201ENST00000323668 GPKOWQ92917 476 aaPredicted RBP eCLIP16.42■□□□□ 0.22
TCOF1-201ENST00000323668 GSTTP1A0A1W2PQM5 241 aa16.42■□□□□ 0.22
TCOF1-201ENST00000323668 EEF1GP26641 437 aaKnown RBP16.42■□□□□ 0.22
TCOF1-201ENST00000323668 REXO1Q8N1G1 1221 aaKnown RBP16.42■□□□□ 0.22
TCOF1-201ENST00000323668 CDCA7Q9BWT1 371 aaPredicted RBP16.42■□□□□ 0.22
TCOF1-201ENST00000323668 LY9Q9HBG7 655 aa16.42■□□□□ 0.22
TCOF1-201ENST00000323668 RNASE9P60153 205 aaKnown RBP16.42■□□□□ 0.22
TCOF1-201ENST00000323668 VWA3BQ502W6 1294 aa16.42■□□□□ 0.22
TCOF1-201ENST00000323668 DHX37Q8IY37 1157 aaKnown RBP16.42■□□□□ 0.22
TCOF1-201ENST00000323668 IL17RAQ96F46 866 aa16.42■□□□□ 0.22
TCOF1-201ENST00000323668 TUBGCP2Q9BSJ2 902 aa16.42■□□□□ 0.22
TCOF1-201ENST00000323668 ISCA1Q9BUE6 129 aa16.42■□□□□ 0.22
TCOF1-201ENST00000323668 AGLP35573 1532 aa16.42■□□□□ 0.22
TCOF1-201ENST00000323668 SMCO2A6NFE2 343 aa16.42■□□□□ 0.22
TCOF1-201ENST00000323668 ENC1O14682 589 aa16.42■□□□□ 0.22
TCOF1-201ENST00000323668 UBE4AQ14139 1066 aa16.42■□□□□ 0.22
TCOF1-201ENST00000323668 SGMS1Q86VZ5 419 aa16.42■□□□□ 0.22
TCOF1-201ENST00000323668 DPF2Q92785 391 aa16.42■□□□□ 0.22
TCOF1-201ENST00000323668 EXOC4Q96A65 974 aa16.42■□□□□ 0.22
TCOF1-201ENST00000323668 NEDD4P46934 1319 aa16.41■□□□□ 0.22
TCOF1-201ENST00000323668 CETN3O15182 167 aa16.41■□□□□ 0.22
TCOF1-201ENST00000323668 MFAP3LO75121 409 aa16.41■□□□□ 0.22
TCOF1-201ENST00000323668 CALCRLQ16602 461 aa16.41■□□□□ 0.22
TCOF1-201ENST00000323668 ZNF658Q5TYW1 1059 aaPredicted RBP16.41■□□□□ 0.22
TCOF1-201ENST00000323668 NYAP1Q6ZVC0 841 aa16.41■□□□□ 0.22
TCOF1-201ENST00000323668 B4GALNT4Q76KP1 1039 aa16.41■□□□□ 0.22
TCOF1-201ENST00000323668 RWDD2AQ9UIY3 292 aa16.41■□□□□ 0.22
TCOF1-201ENST00000323668 RTCBQ9Y3I0 505 aaKnown RBP16.41■□□□□ 0.22
TCOF1-201ENST00000323668 UBN2Q6ZU65 1347 aa16.41■□□□□ 0.22
TCOF1-201ENST00000323668 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.41■□□□□ 0.22
TCOF1-201ENST00000323668 TSKSQ9UJT2 592 aa16.41■□□□□ 0.22
TCOF1-201ENST00000323668 UTP18Q9Y5J1 556 aaKnown RBP eCLIP16.41■□□□□ 0.228e-6■■■■■ 36.2
TCOF1-201ENST00000323668 RPL13P26373 211 aaKnown RBP16.41■□□□□ 0.22
TCOF1-201ENST00000323668 ALX1Q15699 326 aa16.41■□□□□ 0.22
TCOF1-201ENST00000323668 GALNT17Q6IS24 598 aa16.41■□□□□ 0.22
TCOF1-201ENST00000323668 CC2D1AQ6P1N0 951 aaPredicted RBP16.41■□□□□ 0.22
TCOF1-201ENST00000323668 PPM1EQ8WY54 764 aa16.41■□□□□ 0.22
TCOF1-201ENST00000323668 EHMT1Q9H9B1 1298 aa16.41■□□□□ 0.22
TCOF1-201ENST00000323668 SEMA3EO15041 775 aa16.4■□□□□ 0.22
TCOF1-201ENST00000323668 ATP2C2O75185 946 aa16.4■□□□□ 0.22
TCOF1-201ENST00000323668 POTEJP0CG39 1038 aa16.4■□□□□ 0.22
TCOF1-201ENST00000323668 PRPHP41219 470 aa16.4■□□□□ 0.22
TCOF1-201ENST00000323668 SYNE4Q8N205 404 aa16.4■□□□□ 0.22
TCOF1-201ENST00000323668 CCDC155Q8N6L0 562 aa16.4■□□□□ 0.22
TCOF1-201ENST00000323668 GPCPD1Q9NPB8 672 aa16.4■□□□□ 0.22
TCOF1-201ENST00000323668 NLRC4Q9NPP4 1024 aa16.4■□□□□ 0.22
TCOF1-201ENST00000323668 SOS2Q07890 1332 aaPredicted RBP16.4■□□□□ 0.22
TCOF1-201ENST00000323668 TRIM28Q13263 835 aaKnown RBP16.4■□□□□ 0.22
TCOF1-201ENST00000323668 HERC4Q5GLZ8 1057 aaPredicted RBP16.4■□□□□ 0.22
TCOF1-201ENST00000323668 RGS22Q8NE09 1264 aa16.4■□□□□ 0.22
TCOF1-201ENST00000323668 STAG1Q8WVM7 1258 aa16.4■□□□□ 0.22
TCOF1-201ENST00000323668 ATP8A2Q9NTI2 1148 aa16.4■□□□□ 0.22
TCOF1-201ENST00000323668 ABCC12Q96J65 1359 aa16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms