RNA–Protein interactions for RNA: ENST00000317840.9

COL3A1-202, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2 BASIC

Gene COL3A1, Length 3,873 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-202ENST00000317840 CD44P16070 742 aaKnown RBP11.85□□□□□ -0.51
COL3A1-202ENST00000317840 MDM2Q00987 491 aaPredicted RBP11.85□□□□□ -0.51
COL3A1-202ENST00000317840 PICALMQ13492 652 aa11.85□□□□□ -0.51
COL3A1-202ENST00000317840 TMEM139Q8IV31 216 aa11.85□□□□□ -0.51
COL3A1-202ENST00000317840 C10orf67Q8IYJ2 551 aa11.85□□□□□ -0.51
COL3A1-202ENST00000317840 HINFPQ9BQA5 517 aa11.85□□□□□ -0.51
COL3A1-202ENST00000317840 MCM9Q9NXL9 1143 aa11.85□□□□□ -0.51
COL3A1-202ENST00000317840 SAP30BPQ9UHR5 308 aaKnown RBP11.85□□□□□ -0.51
COL3A1-202ENST00000317840 AFF2P51816 1311 aa11.84□□□□□ -0.51
COL3A1-202ENST00000317840 TCRBV5S4A2TA0A5A2 114 aa11.84□□□□□ -0.51
COL3A1-202ENST00000317840 VGLL3A8MV65 326 aa11.84□□□□□ -0.51
COL3A1-202ENST00000317840 ERVV-1B6SEH8 477 aa11.84□□□□□ -0.51
COL3A1-202ENST00000317840 KCNJ18B7U540 433 aa11.84□□□□□ -0.51
COL3A1-202ENST00000317840 HSPA1LP34931 641 aa11.84□□□□□ -0.51
COL3A1-202ENST00000317840 KCNJ12Q14500 433 aa11.84□□□□□ -0.51
COL3A1-202ENST00000317840 KRT31Q15323 416 aa11.84□□□□□ -0.51
COL3A1-202ENST00000317840 ENAHQ8N8S7 591 aaPredicted RBP11.84□□□□□ -0.51
COL3A1-202ENST00000317840 DRC1Q96MC2 740 aa11.84□□□□□ -0.51
COL3A1-202ENST00000317840 RMND1Q9NWS8 449 aa11.84□□□□□ -0.51
COL3A1-202ENST00000317840 ADAM21Q9UKJ8 722 aa11.84□□□□□ -0.51
COL3A1-202ENST00000317840 WTIPA6NIX2 430 aaPredicted RBP11.84□□□□□ -0.51
COL3A1-202ENST00000317840 APBA3O96018 575 aa11.84□□□□□ -0.51
COL3A1-202ENST00000317840 SUGCTQ9HAC7 445 aa11.84□□□□□ -0.51
COL3A1-202ENST00000317840 ZKSCAN7Q9P0L1 754 aaPredicted RBP11.84□□□□□ -0.51
COL3A1-202ENST00000317840 UFL1O94874 794 aa11.84□□□□□ -0.51
COL3A1-202ENST00000317840 CALM1P0DP23 149 aa11.84□□□□□ -0.51
COL3A1-202ENST00000317840 CALM2P0DP24 149 aa11.84□□□□□ -0.51
COL3A1-202ENST00000317840 CALM3P0DP25 149 aa11.84□□□□□ -0.51
COL3A1-202ENST00000317840 MTIF2P46199 727 aaKnown RBP11.84□□□□□ -0.51
COL3A1-202ENST00000317840 COPB1P53618 953 aaKnown RBP11.84□□□□□ -0.51
COL3A1-202ENST00000317840 TBX2Q13207 712 aaPredicted RBP11.84□□□□□ -0.51
COL3A1-202ENST00000317840 NOM1Q5C9Z4 860 aaKnown RBP11.84□□□□□ -0.51
COL3A1-202ENST00000317840 NCAPH2Q6IBW4 605 aa11.84□□□□□ -0.51
COL3A1-202ENST00000317840 LINC00116Q8NCU8 138 aa11.84□□□□□ -0.51
COL3A1-202ENST00000317840 RGS22Q8NE09 1264 aa11.84□□□□□ -0.51
COL3A1-202ENST00000317840 RASGRP4Q8TDF6 673 aa11.84□□□□□ -0.51
COL3A1-202ENST00000317840 ZNF512BQ96KM6 892 aaPredicted RBP11.84□□□□□ -0.51
COL3A1-202ENST00000317840 DEF6Q9H4E7 631 aa11.84□□□□□ -0.51
COL3A1-202ENST00000317840 ABCB6Q9NP58 842 aa11.84□□□□□ -0.51
COL3A1-202ENST00000317840 RBM28Q9NW13 759 aaKnown RBP11.84□□□□□ -0.51
COL3A1-202ENST00000317840 ADD3Q9UEY8 706 aaKnown RBP11.84□□□□□ -0.51
COL3A1-202ENST00000317840 MARF1Q9Y4F3 1742 aaKnown RBP11.83□□□□□ -0.52
COL3A1-202ENST00000317840 FAM237AA0A1B0GTK4 181 aa11.83□□□□□ -0.52
COL3A1-202ENST00000317840 MATR3P43243 847 aaKnown RBP eCLIP11.83□□□□□ -0.52
COL3A1-202ENST00000317840 IKQ13123 557 aaPredicted RBP11.83□□□□□ -0.52
COL3A1-202ENST00000317840 CUL4BQ13620 913 aa11.83□□□□□ -0.52
COL3A1-202ENST00000317840 CCDC178Q5BJE1 867 aa11.83□□□□□ -0.52
COL3A1-202ENST00000317840 EARS2Q5JPH6 523 aaKnown RBP11.83□□□□□ -0.52
COL3A1-202ENST00000317840 CRACR2AQ9BSW2 395 aa11.83□□□□□ -0.52
COL3A1-202ENST00000317840 KAT14Q9H8E8 782 aa11.83□□□□□ -0.52
COL3A1-202ENST00000317840 GDAQ9Y2T3 454 aa11.83□□□□□ -0.52
COL3A1-202ENST00000317840 PSMA7O14818 248 aa11.83□□□□□ -0.52
COL3A1-202ENST00000317840 NMT2O60551 498 aa11.83□□□□□ -0.52
COL3A1-202ENST00000317840 KIF5BP33176 963 aa11.83□□□□□ -0.52
COL3A1-202ENST00000317840 PPP2R5BQ15173 497 aa11.83□□□□□ -0.52
COL3A1-202ENST00000317840 A0A087X0B3 334 aa11.83□□□□□ -0.52
COL3A1-202ENST00000317840 MACROD2A1Z1Q3 448 aa11.83□□□□□ -0.52
COL3A1-202ENST00000317840 MPHOSPH10O00566 681 aaKnown RBP11.83□□□□□ -0.52
COL3A1-202ENST00000317840 SARSP49591 514 aaKnown RBP11.83□□□□□ -0.52
COL3A1-202ENST00000317840 HEATR3Q7Z4Q2 680 aa11.83□□□□□ -0.52
COL3A1-202ENST00000317840 VGLL2Q8N8G2 317 aa11.83□□□□□ -0.52
COL3A1-202ENST00000317840 ARHGEF1Q92888 912 aaKnown RBP11.83□□□□□ -0.52
COL3A1-202ENST00000317840 GPKOWQ92917 476 aaPredicted RBP eCLIP11.83□□□□□ -0.52
COL3A1-202ENST00000317840 EPN1Q9Y6I3 576 aaPredicted RBP11.83□□□□□ -0.52
COL3A1-202ENST00000317840 ERCC3P19447 782 aa11.82□□□□□ -0.52
COL3A1-202ENST00000317840 INTS5Q6P9B9 1019 aaKnown RBP11.82□□□□□ -0.52
COL3A1-202ENST00000317840 DTHD1Q6ZMT9 781 aa11.82□□□□□ -0.52
COL3A1-202ENST00000317840 ZNF444Q8N0Y2 327 aaPredicted RBP11.82□□□□□ -0.52
COL3A1-202ENST00000317840 MYO6Q9UM54 1294 aa11.82□□□□□ -0.52
COL3A1-202ENST00000317840 THRAP3Q9Y2W1 955 aaKnown RBP11.82□□□□□ -0.52
COL3A1-202ENST00000317840 C5P01031 1676 aa11.82□□□□□ -0.52
COL3A1-202ENST00000317840 RIC1Q4ADV7 1423 aa11.82□□□□□ -0.52
COL3A1-202ENST00000317840 GYPCP04921 128 aa11.82□□□□□ -0.52
COL3A1-202ENST00000317840 DNA2P51530 1060 aa11.82□□□□□ -0.52
COL3A1-202ENST00000317840 CCDC51Q96ER9 411 aa11.82□□□□□ -0.52
COL3A1-202ENST00000317840 PYM1Q9BRP8 204 aaKnown RBP11.82□□□□□ -0.52
COL3A1-202ENST00000317840 FUT8Q9BYC5 575 aa11.82□□□□□ -0.52
COL3A1-202ENST00000317840 CRNKL1Q9BZJ0 848 aaKnown RBP11.82□□□□□ -0.52
COL3A1-202ENST00000317840 RSPH14Q9UHP6 348 aa11.82□□□□□ -0.52
COL3A1-202ENST00000317840 TRIM49BA6NDI0 452 aa11.82□□□□□ -0.52
COL3A1-202ENST00000317840 ZMYND10O75800 440 aa11.82□□□□□ -0.52
COL3A1-202ENST00000317840 RPN1P04843 607 aaKnown RBP11.82□□□□□ -0.52
COL3A1-202ENST00000317840 OR8K1Q8NGG5 319 aa11.82□□□□□ -0.52
COL3A1-202ENST00000317840 FAN1Q9Y2M0 1017 aa11.82□□□□□ -0.52
COL3A1-202ENST00000317840 SPATA31A5Q5VU36 1347 aa11.81□□□□□ -0.52
COL3A1-202ENST00000317840 SPATA31A7Q8IWB4 1347 aa11.81□□□□□ -0.52
COL3A1-202ENST00000317840 SCG2P13521 617 aa11.81□□□□□ -0.52
COL3A1-202ENST00000317840 SPA17Q15506 151 aa11.81□□□□□ -0.52
COL3A1-202ENST00000317840 KIFC2Q96AC6 838 aa11.81□□□□□ -0.52
COL3A1-202ENST00000317840 ABHD10Q9NUJ1 306 aa11.81□□□□□ -0.52
COL3A1-202ENST00000317840 ADAMTSL3P82987 1691 aa11.81□□□□□ -0.52
COL3A1-202ENST00000317840 PRPF3O43395 683 aaKnown RBP11.81□□□□□ -0.52
COL3A1-202ENST00000317840 TBC1D8BQ0IIM8 1120 aa11.81□□□□□ -0.52
COL3A1-202ENST00000317840 MAP9Q49MG5 647 aa11.81□□□□□ -0.52
COL3A1-202ENST00000317840 MED15Q96RN5 788 aa11.81□□□□□ -0.52
COL3A1-202ENST00000317840 CHP1Q99653 195 aa11.81□□□□□ -0.52
COL3A1-202ENST00000317840 TANGO6Q9C0B7 1094 aa11.81□□□□□ -0.52
COL3A1-202ENST00000317840 TACC3Q9Y6A5 838 aa11.81□□□□□ -0.52
COL3A1-202ENST00000317840 KRT86O43790 486 aa11.81□□□□□ -0.52
COL3A1-202ENST00000317840 GTPBP6O43824 516 aaPredicted RBP11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms