RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 ME3Q16798 604 aa21.22■□□□□ 0.99
HMGA1-201ENST00000311487 TMTC2Q8N394 836 aa21.22■□□□□ 0.99
HMGA1-201ENST00000311487 CCDC102AQ96A19 550 aa21.22■□□□□ 0.99
HMGA1-201ENST00000311487 UBA5Q9GZZ9 404 aa21.22■□□□□ 0.99
HMGA1-201ENST00000311487 RPAP3Q9H6T3 665 aaPredicted RBP21.22■□□□□ 0.99
HMGA1-201ENST00000311487 SH2D4AQ9H788 454 aa21.22■□□□□ 0.99
HMGA1-201ENST00000311487 HPS5Q9UPZ3 1129 aa21.22■□□□□ 0.99
HMGA1-201ENST00000311487 CXCL11O14625 94 aa21.21■□□□□ 0.99
HMGA1-201ENST00000311487 ZBTB43O43298 467 aa21.21■□□□□ 0.99
HMGA1-201ENST00000311487 PEX10O60683 326 aa21.21■□□□□ 0.99
HMGA1-201ENST00000311487 PRKCSHP14314 528 aaPredicted RBP21.21■□□□□ 0.99
HMGA1-201ENST00000311487 GTF2A2P52657 109 aa21.21■□□□□ 0.99
HMGA1-201ENST00000311487 SNAP25P60880 206 aa21.21■□□□□ 0.99
HMGA1-201ENST00000311487 KIF23Q02241 960 aaPredicted RBP21.21■□□□□ 0.99
HMGA1-201ENST00000311487 C19orf81C9J6K1 198 aa21.21■□□□□ 0.99
HMGA1-201ENST00000311487 CDC27P30260 824 aa21.21■□□□□ 0.99
HMGA1-201ENST00000311487 NT5C2P49902 561 aa21.21■□□□□ 0.99
HMGA1-201ENST00000311487 USP14P54578 494 aa21.21■□□□□ 0.99
HMGA1-201ENST00000311487 IKQ13123 557 aaPredicted RBP21.21■□□□□ 0.99
HMGA1-201ENST00000311487 SYNE3Q6ZMZ3 975 aa21.21■□□□□ 0.99
HMGA1-201ENST00000311487 GMCL1P1Q8NEA9 526 aa21.21■□□□□ 0.99
HMGA1-201ENST00000311487 PTPRFP10586 1907 aa21.2■□□□□ 0.98
HMGA1-201ENST00000311487 TMEM232C9JQI7 657 aa21.2■□□□□ 0.98
HMGA1-201ENST00000311487 ADD1P35611 737 aaKnown RBP21.2■□□□□ 0.98
HMGA1-201ENST00000311487 NBPF11Q86T75 865 aa21.2■□□□□ 0.98
HMGA1-201ENST00000311487 FAM43AQ8N2R8 423 aa21.2■□□□□ 0.98
HMGA1-201ENST00000311487 MTA3Q9BTC8 594 aa21.2■□□□□ 0.98
HMGA1-201ENST00000311487 VAT1LQ9HCJ6 419 aa21.2■□□□□ 0.98
HMGA1-201ENST00000311487 MAD2L2Q9UI95 211 aa21.2■□□□□ 0.98
HMGA1-201ENST00000311487 GOLGA8AA7E2F4 631 aa21.19■□□□□ 0.98
HMGA1-201ENST00000311487 BTBD19C9JJ37 291 aa21.19■□□□□ 0.98
HMGA1-201ENST00000311487 PLEKHA8P1O95397 391 aa21.19■□□□□ 0.98
HMGA1-201ENST00000311487 CETPP11597 493 aa21.19■□□□□ 0.98
HMGA1-201ENST00000311487 BMP3P12645 472 aa21.19■□□□□ 0.98
HMGA1-201ENST00000311487 PPP4R3BQ5MIZ7 849 aa21.19■□□□□ 0.98
HMGA1-201ENST00000311487 GPAT2Q6NUI2 795 aa21.19■□□□□ 0.98
HMGA1-201ENST00000311487 FANCBQ8NB91 859 aa21.19■□□□□ 0.98
HMGA1-201ENST00000311487 HHIPL1Q96JK4 782 aa21.19■□□□□ 0.98
HMGA1-201ENST00000311487 WDR33Q9C0J8 1336 aaKnown RBP21.19■□□□□ 0.98
HMGA1-201ENST00000311487 hCG_1642624A0A1W2PR95 340 aa21.19■□□□□ 0.98
HMGA1-201ENST00000311487 PARP1P09874 1014 aaKnown RBP21.19■□□□□ 0.98
HMGA1-201ENST00000311487 CYP2C8P10632 490 aa21.19■□□□□ 0.98
HMGA1-201ENST00000311487 METAP2P50579 478 aaKnown RBP eCLIP21.19■□□□□ 0.983e-15■■■□□ 14.6
HMGA1-201ENST00000311487 ANKRD1Q15327 319 aa21.19■□□□□ 0.98
HMGA1-201ENST00000311487 SH3D19Q5HYK7 790 aa21.19■□□□□ 0.98
HMGA1-201ENST00000311487 FBXL16Q8N461 479 aa21.19■□□□□ 0.98
HMGA1-201ENST00000311487 TBC1D2Q9BYX2 928 aa21.19■□□□□ 0.98
HMGA1-201ENST00000311487 LIMCH1Q9UPQ0 1083 aa21.19■□□□□ 0.98
HMGA1-201ENST00000311487 BAZ2BQ9UIF8 2168 aaKnown RBP21.19■□□□□ 0.98
HMGA1-201ENST00000311487 IGF2BP3O00425 579 aaKnown RBP eCLIP21.18■□□□□ 0.989e-9■■■■□ 21.5
HMGA1-201ENST00000311487 KIFC2Q96AC6 838 aa21.18■□□□□ 0.98
HMGA1-201ENST00000311487 ALDH8A1Q9H2A2 487 aaPredicted RBP21.18■□□□□ 0.98
HMGA1-201ENST00000311487 FAM217BQ9NTX9 383 aaPredicted RBP21.18■□□□□ 0.98
HMGA1-201ENST00000311487 FLOT1O75955 427 aa21.17■□□□□ 0.98
HMGA1-201ENST00000311487 ZNF543Q08ER8 600 aa21.17■□□□□ 0.98
HMGA1-201ENST00000311487 SCRN1Q12765 414 aa21.17■□□□□ 0.98
HMGA1-201ENST00000311487 SLKQ9H2G2 1235 aaPredicted RBP21.17■□□□□ 0.98
HMGA1-201ENST00000311487 KLRF2D3W0D1 207 aa21.17■□□□□ 0.98
HMGA1-201ENST00000311487 PDHXO00330 501 aa21.17■□□□□ 0.98
HMGA1-201ENST00000311487 DDAH1O94760 285 aa21.17■□□□□ 0.98
HMGA1-201ENST00000311487 GRM4Q14833 912 aa21.17■□□□□ 0.98
HMGA1-201ENST00000311487 CTCFLQ8NI51 663 aaPredicted RBP21.17■□□□□ 0.98
HMGA1-201ENST00000311487 LPAR1Q92633 364 aa21.17■□□□□ 0.98
HMGA1-201ENST00000311487 GMCL1Q96IK5 515 aa21.17■□□□□ 0.98
HMGA1-201ENST00000311487 FOXD4L1Q9NU39 408 aa21.17■□□□□ 0.98
HMGA1-201ENST00000311487 DHX16O60231 1041 aaKnown RBP21.16■□□□□ 0.98
HMGA1-201ENST00000311487 ECM2O94769 699 aaPredicted RBP21.16■□□□□ 0.98
HMGA1-201ENST00000311487 SNHG28P0DPA3 235 aa21.16■□□□□ 0.98
HMGA1-201ENST00000311487 TAL1P17542 331 aaPredicted RBP21.16■□□□□ 0.98
HMGA1-201ENST00000311487 BECN1Q14457 450 aa21.16■□□□□ 0.98
HMGA1-201ENST00000311487 RTN1Q16799 776 aa21.16■□□□□ 0.98
HMGA1-201ENST00000311487 SLC35G1Q2M3R5 365 aa21.16■□□□□ 0.98
HMGA1-201ENST00000311487 FASTKD5Q7L8L6 764 aaKnown RBP21.16■□□□□ 0.98
HMGA1-201ENST00000311487 CCDC83Q8IWF9 413 aa21.16■□□□□ 0.98
HMGA1-201ENST00000311487 SPRYD3Q8NCJ5 442 aa21.16■□□□□ 0.98
HMGA1-201ENST00000311487 AGTPBP1Q9UPW5 1226 aa21.16■□□□□ 0.98
HMGA1-201ENST00000311487 WDR46O15213 610 aaKnown RBP21.16■□□□□ 0.98
HMGA1-201ENST00000311487 EVCP57679 992 aa21.16■□□□□ 0.98
HMGA1-201ENST00000311487 ST3GAL1Q11201 340 aa21.16■□□□□ 0.98
HMGA1-201ENST00000311487 PROCA1Q8NCQ7 364 aaPredicted RBP21.16■□□□□ 0.98
HMGA1-201ENST00000311487 DCAF4Q8WV16 495 aa21.16■□□□□ 0.98
HMGA1-201ENST00000311487 ZNF274Q96GC6 653 aaPredicted RBP21.16■□□□□ 0.98
HMGA1-201ENST00000311487 TMX3Q96JJ7 454 aa21.16■□□□□ 0.98
HMGA1-201ENST00000311487 C12orf42Q96LP6 360 aa21.16■□□□□ 0.98
HMGA1-201ENST00000311487 PALM3A6NDB9 673 aaPredicted RBP21.15■□□□□ 0.98
HMGA1-201ENST00000311487 MANSC4A6NHS7 340 aaPredicted RBP21.15■□□□□ 0.98
HMGA1-201ENST00000311487 NOGQ13253 232 aa21.15■□□□□ 0.98
HMGA1-201ENST00000311487 CATSPERGQ6ZRH7 1159 aa21.15■□□□□ 0.98
HMGA1-201ENST00000311487 SRBD1Q8N5C6 995 aaKnown RBP21.15■□□□□ 0.98
HMGA1-201ENST00000311487 PHKBQ93100 1093 aa21.15■□□□□ 0.98
HMGA1-201ENST00000311487 P2RX7Q99572 595 aaKnown RBP21.15■□□□□ 0.98
HMGA1-201ENST00000311487 STAT2P52630 851 aa21.14■□□□□ 0.98
HMGA1-201ENST00000311487 ASCC2Q9H1I8 757 aaPredicted RBP21.14■□□□□ 0.98
HMGA1-201ENST00000311487 CYTH3O43739 400 aa21.14■□□□□ 0.97
HMGA1-201ENST00000311487 POTEEQ6S8J3 1075 aa21.14■□□□□ 0.97
HMGA1-201ENST00000311487 HOMER1Q86YM7 354 aa21.14■□□□□ 0.97
HMGA1-201ENST00000311487 IFNL1Q8IU54 200 aa21.14■□□□□ 0.97
HMGA1-201ENST00000311487 USP17L15C9J2P7 530 aa21.13■□□□□ 0.97
HMGA1-201ENST00000311487 USP17L13C9JLJ4 530 aa21.13■□□□□ 0.97
HMGA1-201ENST00000311487 USP17L11C9JVI0 530 aa21.13■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms