RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 NCAPH2Q6IBW4 605 aa19.13■□□□□ 0.65
SYNPO-201ENST00000307662 A0A0D9SFI3 127 aa19.13■□□□□ 0.65
SYNPO-201ENST00000307662 SLC35F6Q8N357 371 aa19.13■□□□□ 0.65
SYNPO-201ENST00000307662 SSH3Q8TE77 659 aa19.13■□□□□ 0.65
SYNPO-201ENST00000307662 FAM89AQ96GI7 184 aa19.13■□□□□ 0.65
SYNPO-201ENST00000307662 ZNF594Q96JF6 807 aaPredicted RBP19.13■□□□□ 0.65
SYNPO-201ENST00000307662 ATP10AO60312 1499 aa19.13■□□□□ 0.65
SYNPO-201ENST00000307662 CCDC169A6NNP5 214 aa19.13■□□□□ 0.65
SYNPO-201ENST00000307662 PEX19P40855 299 aa19.13■□□□□ 0.65
SYNPO-201ENST00000307662 CCDC13Q8IYE1 715 aa19.13■□□□□ 0.65
SYNPO-201ENST00000307662 RNF168Q8IYW5 571 aaPredicted RBP19.13■□□□□ 0.65
SYNPO-201ENST00000307662 LZTS2Q9BRK4 669 aa19.13■□□□□ 0.65
SYNPO-201ENST00000307662 LGR6Q9HBX8 967 aa19.13■□□□□ 0.65
SYNPO-201ENST00000307662 SAP30BPQ9UHR5 308 aaKnown RBP19.13■□□□□ 0.65
SYNPO-201ENST00000307662 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP19.12■□□□□ 0.65
SYNPO-201ENST00000307662 ARHGEF10O15013 1369 aa19.12■□□□□ 0.65
SYNPO-201ENST00000307662 EXOC3O60645 756 aa19.12■□□□□ 0.65
SYNPO-201ENST00000307662 NCBP1Q09161 790 aaKnown RBP19.12■□□□□ 0.65
SYNPO-201ENST00000307662 DPH5Q9H2P9 285 aa19.12■□□□□ 0.65
SYNPO-201ENST00000307662 ARHGEF35A5YM69 484 aa19.12■□□□□ 0.65
SYNPO-201ENST00000307662 BACH1O14867 736 aa19.12■□□□□ 0.65
SYNPO-201ENST00000307662 IFT88Q13099 833 aa19.12■□□□□ 0.65
SYNPO-201ENST00000307662 KCTD16Q68DU8 428 aa19.12■□□□□ 0.65
SYNPO-201ENST00000307662 TEX11Q8IYF3 940 aa19.12■□□□□ 0.65
SYNPO-201ENST00000307662 TACC3Q9Y6A5 838 aa19.12■□□□□ 0.65
SYNPO-201ENST00000307662 DCAF8L1A6NGE4 600 aa19.11■□□□□ 0.65
SYNPO-201ENST00000307662 STK10O94804 968 aaKnown RBP19.11■□□□□ 0.65
SYNPO-201ENST00000307662 CLCN6P51797 869 aa19.11■□□□□ 0.65
SYNPO-201ENST00000307662 ZMYM6O95789 1325 aa19.11■□□□□ 0.65
SYNPO-201ENST00000307662 ZNF532Q9HCE3 1301 aa19.11■□□□□ 0.65
SYNPO-201ENST00000307662 PLEKHG3A1L390 1219 aa19.11■□□□□ 0.65
SYNPO-201ENST00000307662 GCNT3O95395 438 aa19.11■□□□□ 0.65
SYNPO-201ENST00000307662 GUCY2DQ02846 1103 aa19.11■□□□□ 0.65
SYNPO-201ENST00000307662 GCKRQ14397 625 aa19.11■□□□□ 0.65
SYNPO-201ENST00000307662 EFCC1Q9HA90 598 aa19.11■□□□□ 0.65
SYNPO-201ENST00000307662 RTEL1Q9NZ71 1219 aa19.11■□□□□ 0.65
SYNPO-201ENST00000307662 LRRD1A4D1F6 860 aa19.11■□□□□ 0.65
SYNPO-201ENST00000307662 CCDC151A5D8V7 595 aa19.11■□□□□ 0.65
SYNPO-201ENST00000307662 IKBKBO14920 756 aa19.11■□□□□ 0.65
SYNPO-201ENST00000307662 STAT1P42224 750 aa19.11■□□□□ 0.65
SYNPO-201ENST00000307662 DCUN1D2Q6PH85 259 aa19.11■□□□□ 0.65
SYNPO-201ENST00000307662 CLIC4Q9Y696 253 aa19.11■□□□□ 0.65
SYNPO-201ENST00000307662 GTPBP6O43824 516 aaPredicted RBP19.11■□□□□ 0.65
SYNPO-201ENST00000307662 CD2BP2O95400 341 aaKnown RBP19.11■□□□□ 0.65
SYNPO-201ENST00000307662 ZAP70P43403 619 aa19.11■□□□□ 0.65
SYNPO-201ENST00000307662 CCDC197Q8NCU1 140 aa19.11■□□□□ 0.65
SYNPO-201ENST00000307662 GRK7Q8WTQ7 553 aa19.11■□□□□ 0.65
SYNPO-201ENST00000307662 MRPL44Q9H9J2 332 aaKnown RBP19.11■□□□□ 0.65
SYNPO-201ENST00000307662 SPATS2LQ9NUQ6 558 aaKnown RBP19.11■□□□□ 0.65
SYNPO-201ENST00000307662 MAGI3Q5TCQ9 1506 aa19.11■□□□□ 0.65
SYNPO-201ENST00000307662 OPHN1O60890 802 aa19.1■□□□□ 0.65
SYNPO-201ENST00000307662 CASP14P31944 242 aa19.1■□□□□ 0.65
SYNPO-201ENST00000307662 MYCT1Q8N699 235 aa19.1■□□□□ 0.65
SYNPO-201ENST00000307662 PKD2L1Q9P0L9 805 aa19.1■□□□□ 0.65
SYNPO-201ENST00000307662 JAG2Q9Y219 1238 aa19.1■□□□□ 0.65
SYNPO-201ENST00000307662 EPHB4P54760 987 aa19.1■□□□□ 0.65
SYNPO-201ENST00000307662 SPTLC3Q9NUV7 552 aa19.1■□□□□ 0.65
SYNPO-201ENST00000307662 C11orf57Q6ZUT1 292 aaPredicted RBP19.1■□□□□ 0.65
SYNPO-201ENST00000307662 ADGBQ8N7X0 1667 aa19.1■□□□□ 0.65
SYNPO-201ENST00000307662 hCG_1642624A0A1W2PR95 340 aa19.1■□□□□ 0.65
SYNPO-201ENST00000307662 FRMD3A2A2Y4 597 aa19.1■□□□□ 0.65
SYNPO-201ENST00000307662 CCDC89Q8N998 374 aa19.1■□□□□ 0.65
SYNPO-201ENST00000307662 TRIM4Q9C037 500 aa19.1■□□□□ 0.65
SYNPO-201ENST00000307662 LSG1Q9H089 658 aaKnown RBP19.1■□□□□ 0.65
SYNPO-201ENST00000307662 B4DLN1 442 aa19.1■□□□□ 0.65
SYNPO-201ENST00000307662 COPB1P53618 953 aaKnown RBP19.1■□□□□ 0.65
SYNPO-201ENST00000307662 PDE1CQ14123 709 aaPredicted RBP19.1■□□□□ 0.65
SYNPO-201ENST00000307662 ARHGAP44Q17R89 818 aa19.1■□□□□ 0.65
SYNPO-201ENST00000307662 NT5C3AQ9H0P0 336 aa19.1■□□□□ 0.65
SYNPO-201ENST00000307662 SLC52A2Q9HAB3 445 aa19.1■□□□□ 0.65
SYNPO-201ENST00000307662 CLIC6Q96NY7 704 aa19.09■□□□□ 0.65
SYNPO-201ENST00000307662 ARHGEF5Q12774 1597 aa19.09■□□□□ 0.65
SYNPO-201ENST00000307662 ARHGAP42A6NI28 874 aa19.09■□□□□ 0.65
SYNPO-201ENST00000307662 HARSP12081 509 aaKnown RBP19.09■□□□□ 0.65
SYNPO-201ENST00000307662 MYOCDQ8IZQ8 938 aa19.09■□□□□ 0.65
SYNPO-201ENST00000307662 JRKLQ9Y4A0 524 aa19.09■□□□□ 0.65
SYNPO-201ENST00000307662 MYCNP04198 464 aaPredicted RBP19.09■□□□□ 0.65
SYNPO-201ENST00000307662 TPX2Q9ULW0 747 aaKnown RBP19.09■□□□□ 0.65
SYNPO-201ENST00000307662 ADCY9O60503 1353 aa19.09■□□□□ 0.65
SYNPO-201ENST00000307662 SUN1O94901 812 aa19.09■□□□□ 0.65
SYNPO-201ENST00000307662 XRCC5P13010 732 aaKnown RBP19.09■□□□□ 0.65
SYNPO-201ENST00000307662 CUL4AQ13619 759 aa19.09■□□□□ 0.65
SYNPO-201ENST00000307662 ZNF654Q8IZM8 581 aa19.09■□□□□ 0.65
SYNPO-201ENST00000307662 EDC3Q96F86 508 aaKnown RBP19.09■□□□□ 0.65
SYNPO-201ENST00000307662 PARD6BQ9BYG5 372 aa19.09■□□□□ 0.65
SYNPO-201ENST00000307662 LARSQ9P2J5 1176 aaKnown RBP19.09■□□□□ 0.65
SYNPO-201ENST00000307662 ABCB4P21439 1286 aa19.08■□□□□ 0.65
SYNPO-201ENST00000307662 PHBP35232 272 aa19.08■□□□□ 0.65
SYNPO-201ENST00000307662 RAD51AP2Q09MP3 1159 aa19.08■□□□□ 0.65
SYNPO-201ENST00000307662 LPIN2Q92539 896 aa19.08■□□□□ 0.65
SYNPO-201ENST00000307662 SESN3P58005 492 aa19.08■□□□□ 0.65
SYNPO-201ENST00000307662 EIF4A1P60842 406 aaKnown RBP19.08■□□□□ 0.65
SYNPO-201ENST00000307662 NSFL1CQ9UNZ2 370 aaKnown RBP19.08■□□□□ 0.65
SYNPO-201ENST00000307662 PPM1FP49593 454 aaPredicted RBP19.08■□□□□ 0.64
SYNPO-201ENST00000307662 ATP2A3Q93084 1043 aa19.08■□□□□ 0.64
SYNPO-201ENST00000307662 Q9H521 79 aa19.08■□□□□ 0.64
SYNPO-201ENST00000307662 BAG2O95816 211 aa19.08■□□□□ 0.64
SYNPO-201ENST00000307662 RBBP5Q15291 538 aaKnown RBP19.08■□□□□ 0.64
SYNPO-201ENST00000307662 OGFOD1Q8N543 542 aa19.08■□□□□ 0.64
SYNPO-201ENST00000307662 SPATA5Q8NB90 893 aa19.08■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms