RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 MMP19Q99542 508 aa17.79■□□□□ 0.44
CCDC88B-201ENST00000301897 ARMT1Q9H993 441 aa17.79■□□□□ 0.44
CCDC88B-201ENST00000301897 GOPCQ9HD26 462 aa17.79■□□□□ 0.44
CCDC88B-201ENST00000301897 XPNPEP3Q9NQH7 507 aa17.79■□□□□ 0.44
CCDC88B-201ENST00000301897 ADAMTS5Q9UNA0 930 aa17.79■□□□□ 0.44
CCDC88B-201ENST00000301897 PHF24Q9UPV7 400 aa17.79■□□□□ 0.44
CCDC88B-201ENST00000301897 TACC3Q9Y6A5 838 aa17.79■□□□□ 0.44
CCDC88B-201ENST00000301897 ROBO3Q96MS0 1386 aa17.79■□□□□ 0.44
CCDC88B-201ENST00000301897 MBD4O95243 580 aa17.78■□□□□ 0.44
CCDC88B-201ENST00000301897 ADD2P35612 726 aa17.78■□□□□ 0.44
CCDC88B-201ENST00000301897 EVX2Q03828 476 aa17.78■□□□□ 0.44
CCDC88B-201ENST00000301897 KCTD2Q14681 263 aa17.78■□□□□ 0.44
CCDC88B-201ENST00000301897 TMEM132BQ14DG7 1078 aa17.78■□□□□ 0.44
CCDC88B-201ENST00000301897 FAM47AQ5JRC9 791 aa17.78■□□□□ 0.44
CCDC88B-201ENST00000301897 PRAMEF19Q5SWL8 479 aa17.78■□□□□ 0.44
CCDC88B-201ENST00000301897 C12orf60Q5U649 245 aa17.78■□□□□ 0.44
CCDC88B-201ENST00000301897 C16orf86Q6ZW13 317 aa17.78■□□□□ 0.44
CCDC88B-201ENST00000301897 RIOX2Q8IUF8 465 aa17.78■□□□□ 0.44
CCDC88B-201ENST00000301897 PANK1Q8TE04 598 aa17.78■□□□□ 0.44
CCDC88B-201ENST00000301897 BADQ92934 168 aa17.78■□□□□ 0.44
CCDC88B-201ENST00000301897 FAM161BQ96MY7 647 aa17.78■□□□□ 0.44
CCDC88B-201ENST00000301897 TINF2Q9BSI4 451 aa17.78■□□□□ 0.44
CCDC88B-201ENST00000301897 CHMP4BQ9H444 224 aaKnown RBP17.78■□□□□ 0.44
CCDC88B-201ENST00000301897 COL11A1P12107 1806 aaPredicted RBP17.77■□□□□ 0.44
CCDC88B-201ENST00000301897 TTC28Q96AY4 2481 aa17.77■□□□□ 0.44
CCDC88B-201ENST00000301897 ATP5JP18859 108 aa17.77■□□□□ 0.44
CCDC88B-201ENST00000301897 STAT3P40763 770 aa17.77■□□□□ 0.44
CCDC88B-201ENST00000301897 ZSCAN25Q6NSZ9 544 aa17.77■□□□□ 0.44
CCDC88B-201ENST00000301897 SAMD1Q6SPF0 538 aaPredicted RBP17.77■□□□□ 0.44
CCDC88B-201ENST00000301897 FERMT2Q96AC1 680 aa17.77■□□□□ 0.44
CCDC88B-201ENST00000301897 COL25A1Q9BXS0 654 aaPredicted RBP17.77■□□□□ 0.44
CCDC88B-201ENST00000301897 SEMA6BQ9H3T3 888 aa17.77■□□□□ 0.44
CCDC88B-201ENST00000301897 PLXNA1Q9UIW2 1896 aa17.77■□□□□ 0.43
CCDC88B-201ENST00000301897 MYH7P12883 1935 aa17.76■□□□□ 0.43
CCDC88B-201ENST00000301897 TMEM265A0A087WTH1 108 aa17.76■□□□□ 0.43
CCDC88B-201ENST00000301897 USP17L12C9JPN9 530 aa17.76■□□□□ 0.43
CCDC88B-201ENST00000301897 USP17L21D6R901 530 aa17.76■□□□□ 0.43
CCDC88B-201ENST00000301897 APBB1O00213 710 aa17.76■□□□□ 0.43
CCDC88B-201ENST00000301897 VWA5AO00534 786 aa17.76■□□□□ 0.43
CCDC88B-201ENST00000301897 TLE2Q04725 743 aa17.76■□□□□ 0.43
CCDC88B-201ENST00000301897 UBE3CQ15386 1083 aa17.76■□□□□ 0.43
CCDC88B-201ENST00000301897 C9orf50Q5SZB4 431 aa17.76■□□□□ 0.43
CCDC88B-201ENST00000301897 MSL3Q8N5Y2 521 aaKnown RBP17.76■□□□□ 0.43
CCDC88B-201ENST00000301897 CDX2Q99626 313 aaPredicted RBP17.76■□□□□ 0.43
CCDC88B-201ENST00000301897 PPP1R9AQ9ULJ8 1098 aa17.76■□□□□ 0.43
CCDC88B-201ENST00000301897 DDX19BQ9UMR2 479 aa17.76■□□□□ 0.43
CCDC88B-201ENST00000301897 CNPY2Q9Y2B0 182 aa17.76■□□□□ 0.43
CCDC88B-201ENST00000301897 VCANP13611 3396 aa17.75■□□□□ 0.43
CCDC88B-201ENST00000301897 TRIM43BA6NCK2 446 aa17.75■□□□□ 0.43
CCDC88B-201ENST00000301897 PRKAB2O43741 272 aa17.75■□□□□ 0.43
CCDC88B-201ENST00000301897 CLTBP09497 229 aa17.75■□□□□ 0.43
CCDC88B-201ENST00000301897 EEF2P13639 858 aaKnown RBP17.75■□□□□ 0.43
CCDC88B-201ENST00000301897 AKR1A1P14550 325 aa17.75■□□□□ 0.43
CCDC88B-201ENST00000301897 ZNF792Q3KQV3 632 aa17.75■□□□□ 0.43
CCDC88B-201ENST00000301897 CLEC10AQ8IUN9 316 aa17.75■□□□□ 0.43
CCDC88B-201ENST00000301897 TRIM43Q96BQ3 446 aaPredicted RBP17.75■□□□□ 0.43
CCDC88B-201ENST00000301897 HAUS7Q99871 368 aa17.75■□□□□ 0.43
CCDC88B-201ENST00000301897 TSEN34Q9BSV6 310 aaKnown RBP17.75■□□□□ 0.43
CCDC88B-201ENST00000301897 BOLA2Q9H3K6 86 aa17.75■□□□□ 0.43
CCDC88B-201ENST00000301897 ZBED9Q6R2W3 1325 aa17.74■□□□□ 0.43
CCDC88B-201ENST00000301897 KIAA0355O15063 1070 aa17.74■□□□□ 0.43
CCDC88B-201ENST00000301897 MAFAQ8NHW3 353 aaPredicted RBP17.74■□□□□ 0.43
CCDC88B-201ENST00000301897 NUP133Q8WUM0 1156 aa17.74■□□□□ 0.43
CCDC88B-201ENST00000301897 ARPP21Q9UBL0 812 aaPredicted RBP17.74■□□□□ 0.43
CCDC88B-201ENST00000301897 SLC4A4Q9Y6R1 1079 aa17.74■□□□□ 0.43
CCDC88B-201ENST00000301897 EYSQ5T1H1 3165 aa17.74■□□□□ 0.43
CCDC88B-201ENST00000301897 PRUNE2Q8WUY3 3088 aa17.73■□□□□ 0.43
CCDC88B-201ENST00000301897 A0A1W2PQ45 241 aaPredicted RBP17.73■□□□□ 0.43
CCDC88B-201ENST00000301897 A0A1W2PQY0 241 aa17.73■□□□□ 0.43
CCDC88B-201ENST00000301897 PGK1P00558 417 aa17.73■□□□□ 0.43
CCDC88B-201ENST00000301897 PGK2P07205 417 aa17.73■□□□□ 0.43
CCDC88B-201ENST00000301897 RAG1P15918 1043 aa17.73■□□□□ 0.43
CCDC88B-201ENST00000301897 SH3RF1Q7Z6J0 888 aa17.73■□□□□ 0.43
CCDC88B-201ENST00000301897 RNPC3Q96LT9 517 aaKnown RBP17.73■□□□□ 0.43
CCDC88B-201ENST00000301897 TOX2Q96NM4 488 aa17.73■□□□□ 0.43
CCDC88B-201ENST00000301897 TEX13BQ9BXU2 312 aa17.73■□□□□ 0.43
CCDC88B-201ENST00000301897 FBXO28Q9NVF7 368 aa17.73■□□□□ 0.43
CCDC88B-201ENST00000301897 ZNF214Q9UL59 606 aaPredicted RBP17.73■□□□□ 0.43
CCDC88B-201ENST00000301897 CDH23Q9H251 3354 aa17.73■□□□□ 0.43
CCDC88B-201ENST00000301897 SYNGAP1Q96PV0 1343 aa17.72■□□□□ 0.43
CCDC88B-201ENST00000301897 CYP2D7A0A087X1C5 515 aa17.72■□□□□ 0.43
CCDC88B-201ENST00000301897 MOXD2PA6NHM9 499 aa17.72■□□□□ 0.43
CCDC88B-201ENST00000301897 DCDC2CA8MYV0 355 aa17.72■□□□□ 0.43
CCDC88B-201ENST00000301897 RAD21O60216 631 aa17.72■□□□□ 0.43
CCDC88B-201ENST00000301897 FAM83BQ5T0W9 1011 aa17.72■□□□□ 0.43
CCDC88B-201ENST00000301897 CTR9Q6PD62 1173 aa17.72■□□□□ 0.43
CCDC88B-201ENST00000301897 ANKRD33Q7Z3H0 272 aa17.72■□□□□ 0.43
CCDC88B-201ENST00000301897 SLF1Q9BQI6 1058 aa17.72■□□□□ 0.43
CCDC88B-201ENST00000301897 ZBTB40Q9NUA8 1239 aa17.72■□□□□ 0.43
CCDC88B-201ENST00000301897 FAM184BQ9ULE4 1060 aa17.72■□□□□ 0.43
CCDC88B-201ENST00000301897 PQBP1O60828 265 aaKnown RBP17.71■□□□□ 0.43
CCDC88B-201ENST00000301897 ZNF865P0CJ78 1059 aaPredicted RBP17.71■□□□□ 0.43
CCDC88B-201ENST00000301897 FPGSQ05932 587 aa17.71■□□□□ 0.43
CCDC88B-201ENST00000301897 GIMAP6Q6P9H5 292 aa17.71■□□□□ 0.43
CCDC88B-201ENST00000301897 REPS2Q8NFH8 660 aa17.71■□□□□ 0.43
CCDC88B-201ENST00000301897 DDX11Q96FC9 970 aa17.71■□□□□ 0.43
CCDC88B-201ENST00000301897 BCL11AQ9H165 835 aa17.71■□□□□ 0.43
CCDC88B-201ENST00000301897 TMEM39AQ9NV64 488 aa17.71■□□□□ 0.43
CCDC88B-201ENST00000301897 NYAP2Q9P242 653 aa17.71■□□□□ 0.43
CCDC88B-201ENST00000301897 MROH7Q68CQ1 1323 aa17.71■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 130.9 ms