RNA–Protein interactions for RNA: ENST00000297979.9

C9orf3-202, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best) BASIC

Gene C9orf3, Length 2,820 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-202ENST00000297979 CD2APQ9Y5K6 639 aa16.38■□□□□ 0.21
C9orf3-202ENST00000297979 CYTH3O43739 400 aa16.38■□□□□ 0.21
C9orf3-202ENST00000297979 RRP9O43818 475 aaKnown RBP16.38■□□□□ 0.21
C9orf3-202ENST00000297979 KINO60870 393 aaKnown RBP16.38■□□□□ 0.21
C9orf3-202ENST00000297979 CLSTN1O94985 981 aa16.38■□□□□ 0.21
C9orf3-202ENST00000297979 CCDC192P0DO97 292 aa16.38■□□□□ 0.21
C9orf3-202ENST00000297979 PPP4R3BQ5MIZ7 849 aa16.38■□□□□ 0.21
C9orf3-202ENST00000297979 USP17L2Q6R6M4 530 aa16.38■□□□□ 0.21
C9orf3-202ENST00000297979 ANP32BQ92688 251 aaKnown RBP16.38■□□□□ 0.21
C9orf3-202ENST00000297979 CABP5Q9NP86 173 aa16.38■□□□□ 0.21
C9orf3-202ENST00000297979 MPHOSPH10O00566 681 aaKnown RBP16.37■□□□□ 0.21
C9orf3-202ENST00000297979 FOXP4Q8IVH2 680 aaPredicted RBP16.37■□□□□ 0.21
C9orf3-202ENST00000297979 AGBL3Q8NEM8 1001 aa16.37■□□□□ 0.21
C9orf3-202ENST00000297979 TNFRSF25Q93038 417 aa16.37■□□□□ 0.21
C9orf3-202ENST00000297979 ZBTB12Q9Y330 459 aaPredicted RBP16.37■□□□□ 0.21
C9orf3-202ENST00000297979 CTAGE5O15320 804 aa16.37■□□□□ 0.21
C9orf3-202ENST00000297979 PDHBP11177 359 aa16.37■□□□□ 0.21
C9orf3-202ENST00000297979 VEGFAP15692 232 aaPredicted RBP16.37■□□□□ 0.21
C9orf3-202ENST00000297979 CMA1P23946 247 aa16.37■□□□□ 0.21
C9orf3-202ENST00000297979 CALML3P27482 149 aa16.37■□□□□ 0.21
C9orf3-202ENST00000297979 SMARCA1P28370 1054 aa16.37■□□□□ 0.21
C9orf3-202ENST00000297979 EIF6P56537 245 aaKnown RBP16.37■□□□□ 0.21
C9orf3-202ENST00000297979 DLGAP5Q15398 846 aa16.37■□□□□ 0.21
C9orf3-202ENST00000297979 CLEC10AQ8IUN9 316 aa16.37■□□□□ 0.21
C9orf3-202ENST00000297979 CKAP2LQ8IYA6 745 aa16.37■□□□□ 0.21
C9orf3-202ENST00000297979 FMR1NBQ8N0W7 255 aaPredicted RBP16.37■□□□□ 0.21
C9orf3-202ENST00000297979 LRRC47Q8N1G4 583 aaKnown RBP16.37■□□□□ 0.21
C9orf3-202ENST00000297979 CLIP2Q9UDT6 1046 aa16.37■□□□□ 0.21
C9orf3-202ENST00000297979 A0A1B0GVL5 298 aa16.37■□□□□ 0.21
C9orf3-202ENST00000297979 SLURP2P0DP57 97 aa16.37■□□□□ 0.21
C9orf3-202ENST00000297979 GPKOWQ92917 476 aaPredicted RBP eCLIP16.37■□□□□ 0.21
C9orf3-202ENST00000297979 CEP131Q9UPN4 1083 aa16.37■□□□□ 0.21
C9orf3-202ENST00000297979 FAM196BA6NMK8 535 aa16.36■□□□□ 0.21
C9orf3-202ENST00000297979 USP17L5A8MUK1 530 aa16.36■□□□□ 0.21
C9orf3-202ENST00000297979 NDUFA8P51970 172 aa16.36■□□□□ 0.21
C9orf3-202ENST00000297979 ASPRV1Q53RT3 343 aa16.36■□□□□ 0.21
C9orf3-202ENST00000297979 NOL7Q9UMY1 257 aaKnown RBP16.36■□□□□ 0.21
C9orf3-202ENST00000297979 PCDHB6Q9Y5E3 794 aa16.36■□□□□ 0.21
C9orf3-202ENST00000297979 MYH4Q9Y623 1939 aa16.36■□□□□ 0.21
C9orf3-202ENST00000297979 CUTAO60888 179 aa16.36■□□□□ 0.21
C9orf3-202ENST00000297979 CXCL9Q07325 125 aa16.36■□□□□ 0.21
C9orf3-202ENST00000297979 CERKLQ49MI3 558 aaPredicted RBP16.36■□□□□ 0.21
C9orf3-202ENST00000297979 TATDN1Q6P1N9 297 aa16.36■□□□□ 0.21
C9orf3-202ENST00000297979 METTL16Q86W50 562 aaKnown RBP16.36■□□□□ 0.21
C9orf3-202ENST00000297979 FAM205CA6NFA0 338 aa16.35■□□□□ 0.21
C9orf3-202ENST00000297979 SNHG28P0DPA3 235 aa16.35■□□□□ 0.21
C9orf3-202ENST00000297979 EARS2Q5JPH6 523 aaKnown RBP16.35■□□□□ 0.21
C9orf3-202ENST00000297979 WWC2Q6AWC2 1192 aa16.35■□□□□ 0.21
C9orf3-202ENST00000297979 FAM177A1Q8N128 213 aaPredicted RBP16.35■□□□□ 0.21
C9orf3-202ENST00000297979 CCDC148Q8NFR7 591 aa16.35■□□□□ 0.21
C9orf3-202ENST00000297979 JDP2Q8WYK2 163 aa16.35■□□□□ 0.21
C9orf3-202ENST00000297979 NFKBIEO00221 500 aa16.35■□□□□ 0.21
C9orf3-202ENST00000297979 TYRO3Q06418 890 aa16.35■□□□□ 0.21
C9orf3-202ENST00000297979 HEATR3Q7Z4Q2 680 aa16.35■□□□□ 0.21
C9orf3-202ENST00000297979 KRI1Q8N9T8 703 aaKnown RBP16.35■□□□□ 0.21
C9orf3-202ENST00000297979 UPF1Q92900 1129 aaKnown RBP eCLIP16.35■□□□□ 0.21
C9orf3-202ENST00000297979 RRP36Q96EU6 259 aaKnown RBP16.35■□□□□ 0.21
C9orf3-202ENST00000297979 BARHL2Q9NY43 387 aa16.35■□□□□ 0.21
C9orf3-202ENST00000297979 ZNF70Q9UC06 446 aaPredicted RBP16.35■□□□□ 0.21
C9orf3-202ENST00000297979 TRIM75PA6NK02 468 aa16.34■□□□□ 0.21
C9orf3-202ENST00000297979 PFKFB1P16118 471 aa16.34■□□□□ 0.21
C9orf3-202ENST00000297979 ATP2B1P20020 1258 aa16.34■□□□□ 0.21
C9orf3-202ENST00000297979 CIAPIN1Q6FI81 312 aa16.34■□□□□ 0.21
C9orf3-202ENST00000297979 CPVLQ9H3G5 476 aa16.34■□□□□ 0.21
C9orf3-202ENST00000297979 BCS1LQ9Y276 419 aa16.34■□□□□ 0.21
C9orf3-202ENST00000297979 FRMPD2Q68DX3 1309 aaPredicted RBP16.34■□□□□ 0.21
C9orf3-202ENST00000297979 CLRN2A0PK11 232 aa16.34■□□□□ 0.21
C9orf3-202ENST00000297979 STXBP3O00186 592 aa16.34■□□□□ 0.21
C9orf3-202ENST00000297979 SPDYE2Q495Y8 402 aa16.34■□□□□ 0.21
C9orf3-202ENST00000297979 BLIDQ8IZY5 108 aa16.34■□□□□ 0.21
C9orf3-202ENST00000297979 MTMR14Q8NCE2 650 aa16.34■□□□□ 0.21
C9orf3-202ENST00000297979 CSRNP1Q96S65 589 aa16.34■□□□□ 0.21
C9orf3-202ENST00000297979 SEC63Q9UGP8 760 aaKnown RBP16.34■□□□□ 0.21
C9orf3-202ENST00000297979 PCDHA4Q9UN74 947 aa16.34■□□□□ 0.21
C9orf3-202ENST00000297979 PSDA5PKW4 1024 aaPredicted RBP16.33■□□□□ 0.21
C9orf3-202ENST00000297979 TCP10L2B9ZVM9 353 aa16.33■□□□□ 0.21
C9orf3-202ENST00000297979 PTGER2P43116 358 aa16.33■□□□□ 0.21
C9orf3-202ENST00000297979 CCDC173Q0VFZ6 552 aa16.33■□□□□ 0.21
C9orf3-202ENST00000297979 GALNT17Q6IS24 598 aa16.33■□□□□ 0.21
C9orf3-202ENST00000297979 TYW1BQ6NUM6 668 aa16.33■□□□□ 0.21
C9orf3-202ENST00000297979 SHC4Q6S5L8 630 aa16.33■□□□□ 0.21
C9orf3-202ENST00000297979 SASS6Q6UVJ0 657 aa16.33■□□□□ 0.21
C9orf3-202ENST00000297979 MORC2Q9Y6X9 1032 aaPredicted RBP16.33■□□□□ 0.21
C9orf3-202ENST00000297979 ATP2B2Q01814 1243 aa16.33■□□□□ 0.2
C9orf3-202ENST00000297979 RESP18Q5W5W9 173 aa16.33■□□□□ 0.2
C9orf3-202ENST00000297979 ZNF830Q96NB3 372 aaPredicted RBP16.33■□□□□ 0.2
C9orf3-202ENST00000297979 CLIC6Q96NY7 704 aa16.33■□□□□ 0.2
C9orf3-202ENST00000297979 RIOX1Q9H6W3 641 aa16.33■□□□□ 0.2
C9orf3-202ENST00000297979 KANSL2Q9H9L4 492 aa16.33■□□□□ 0.2
C9orf3-202ENST00000297979 MRVI1Q9Y6F6 885 aa16.33■□□□□ 0.2
C9orf3-202ENST00000297979 BMP15O95972 392 aa16.32■□□□□ 0.2
C9orf3-202ENST00000297979 PTPREP23469 700 aa16.32■□□□□ 0.2
C9orf3-202ENST00000297979 ZNF543Q08ER8 600 aa16.32■□□□□ 0.2
C9orf3-202ENST00000297979 UVSSAQ2YD98 709 aa16.32■□□□□ 0.2
C9orf3-202ENST00000297979 NOM1Q5C9Z4 860 aaKnown RBP16.32■□□□□ 0.2
C9orf3-202ENST00000297979 PIK3AP1Q6ZUJ8 805 aa16.32■□□□□ 0.2
C9orf3-202ENST00000297979 TMEM179Q6ZVK1 233 aa16.32■□□□□ 0.2
C9orf3-202ENST00000297979 HOMER1Q86YM7 354 aa16.32■□□□□ 0.2
C9orf3-202ENST00000297979 DAGLBQ8NCG7 672 aa16.32■□□□□ 0.2
C9orf3-202ENST00000297979 CCDC12Q8WUD4 166 aaPredicted RBP16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 98.4 ms