RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 NIP7Q9Y221 180 aaKnown RBP eCLIP10.9□□□□□ -0.67
COL6A3-201ENST00000295550 RGS16O15492 202 aaPredicted RBP10.89□□□□□ -0.67
COL6A3-201ENST00000295550 SF3A3Q12874 501 aaKnown RBP eCLIP10.89□□□□□ -0.67
COL6A3-201ENST00000295550 RILPQ96NA2 401 aa10.89□□□□□ -0.67
COL6A3-201ENST00000295550 TRIM6Q9C030 488 aaPredicted RBP10.89□□□□□ -0.67
COL6A3-201ENST00000295550 CACYBPQ9HB71 228 aaKnown RBP10.89□□□□□ -0.67
COL6A3-201ENST00000295550 MYH6P13533 1939 aa10.89□□□□□ -0.67
COL6A3-201ENST00000295550 PPFIA4O75335 1185 aa10.89□□□□□ -0.67
COL6A3-201ENST00000295550 DNAJC8O75937 253 aaPredicted RBP10.89□□□□□ -0.67
COL6A3-201ENST00000295550 TMTC1Q8IUR5 882 aa10.89□□□□□ -0.67
COL6A3-201ENST00000295550 LIN9Q5TKA1 542 aa10.89□□□□□ -0.67
COL6A3-201ENST00000295550 SECISBP2LQ93073 1101 aaKnown RBP10.89□□□□□ -0.67
COL6A3-201ENST00000295550 FAN1Q9Y2M0 1017 aa10.89□□□□□ -0.67
COL6A3-201ENST00000295550 STX10O60499 249 aa10.89□□□□□ -0.67
COL6A3-201ENST00000295550 CNNM4Q6P4Q7 775 aa10.89□□□□□ -0.67
COL6A3-201ENST00000295550 RPL13P26373 211 aaKnown RBP10.89□□□□□ -0.67
COL6A3-201ENST00000295550 LRRC8AQ8IWT6 810 aa10.89□□□□□ -0.67
COL6A3-201ENST00000295550 SPATA5Q8NB90 893 aa10.89□□□□□ -0.67
COL6A3-201ENST00000295550 TBC1D8O95759 1140 aa10.89□□□□□ -0.67
COL6A3-201ENST00000295550 CFAP221Q4G0U5 840 aa10.89□□□□□ -0.67
COL6A3-201ENST00000295550 UNC5CLQ8IV45 518 aa10.89□□□□□ -0.67
COL6A3-201ENST00000295550 CCDC51Q96ER9 411 aa10.89□□□□□ -0.67
COL6A3-201ENST00000295550 ADGRB2O60241 1585 aa10.89□□□□□ -0.67
COL6A3-201ENST00000295550 SPECC1L-ADORA2AF8WAN1 911 aa10.89□□□□□ -0.67
COL6A3-201ENST00000295550 CERS3Q8IU89 383 aa10.89□□□□□ -0.67
COL6A3-201ENST00000295550 PRPF31Q8WWY3 499 aaKnown RBP10.89□□□□□ -0.67
COL6A3-201ENST00000295550 COPRSQ9NQ92 184 aa10.89□□□□□ -0.67
COL6A3-201ENST00000295550 PPP1R9AQ9ULJ8 1098 aa10.89□□□□□ -0.67
COL6A3-201ENST00000295550 IQSEC3Q9UPP2 1182 aaPredicted RBP10.89□□□□□ -0.67
COL6A3-201ENST00000295550 NDUFB9Q9Y6M9 179 aa10.89□□□□□ -0.67
COL6A3-201ENST00000295550 SPDYE3A6NKU9 549 aa10.89□□□□□ -0.67
COL6A3-201ENST00000295550 PNOCQ13519 176 aa10.89□□□□□ -0.67
COL6A3-201ENST00000295550 WDR44Q5JSH3 913 aa10.89□□□□□ -0.67
COL6A3-201ENST00000295550 INPP1P49441 399 aa10.88□□□□□ -0.67
COL6A3-201ENST00000295550 NOSTRINQ8IVI9 506 aa10.88□□□□□ -0.67
COL6A3-201ENST00000295550 ATP2A3Q93084 1043 aa10.88□□□□□ -0.67
COL6A3-201ENST00000295550 ZNF594Q96JF6 807 aaPredicted RBP10.88□□□□□ -0.67
COL6A3-201ENST00000295550 NFE2L3Q9Y4A8 694 aa10.88□□□□□ -0.67
COL6A3-201ENST00000295550 CLTAP09496 248 aa10.88□□□□□ -0.67
COL6A3-201ENST00000295550 GABPB2Q8TAK5 448 aaPredicted RBP10.88□□□□□ -0.67
COL6A3-201ENST00000295550 ATP10DQ9P241 1426 aa10.88□□□□□ -0.67
COL6A3-201ENST00000295550 TIMM10P62072 90 aa10.88□□□□□ -0.67
COL6A3-201ENST00000295550 ASIC2Q16515 512 aa10.88□□□□□ -0.67
COL6A3-201ENST00000295550 PARP10Q53GL7 1025 aa10.88□□□□□ -0.67
COL6A3-201ENST00000295550 TTC6Q86TZ1 520 aa10.88□□□□□ -0.67
COL6A3-201ENST00000295550 ZNF496Q96IT1 587 aaPredicted RBP10.88□□□□□ -0.67
COL6A3-201ENST00000295550 NOC4LQ9BVI4 516 aaKnown RBP10.88□□□□□ -0.67
COL6A3-201ENST00000295550 TTC38Q5R3I4 469 aa10.88□□□□□ -0.67
COL6A3-201ENST00000295550 ANKRD20A3Q5VUR7 823 aa10.88□□□□□ -0.67
COL6A3-201ENST00000295550 DIS3L2Q8IYB7 885 aaKnown RBP10.88□□□□□ -0.67
COL6A3-201ENST00000295550 LARSQ9P2J5 1176 aaKnown RBP10.88□□□□□ -0.67
COL6A3-201ENST00000295550 TSKSQ9UJT2 592 aa10.88□□□□□ -0.67
COL6A3-201ENST00000295550 CIAO1O76071 339 aa10.88□□□□□ -0.67
COL6A3-201ENST00000295550 CMA1P23946 247 aa10.88□□□□□ -0.67
COL6A3-201ENST00000295550 NAP1L4Q99733 375 aaKnown RBP10.88□□□□□ -0.67
COL6A3-201ENST00000295550 MCM9Q9NXL9 1143 aa10.88□□□□□ -0.67
COL6A3-201ENST00000295550 ERVV-2B6SEH9 535 aa10.88□□□□□ -0.67
COL6A3-201ENST00000295550 KRT15P19012 456 aa10.88□□□□□ -0.67
COL6A3-201ENST00000295550 KRT9P35527 623 aa10.88□□□□□ -0.67
COL6A3-201ENST00000295550 TNNI2P48788 182 aa10.88□□□□□ -0.67
COL6A3-201ENST00000295550 LIG3P49916 1009 aa10.88□□□□□ -0.67
COL6A3-201ENST00000295550 CASC4Q6P4E1 433 aa10.88□□□□□ -0.67
COL6A3-201ENST00000295550 SPDL1Q96EA4 605 aa10.88□□□□□ -0.67
COL6A3-201ENST00000295550 POLR3EQ9NVU0 708 aa10.88□□□□□ -0.67
COL6A3-201ENST00000295550 RTEL1Q9NZ71 1219 aa10.88□□□□□ -0.67
COL6A3-201ENST00000295550 RFX7Q2KHR2 1363 aa10.88□□□□□ -0.67
COL6A3-201ENST00000295550 GABPAQ06546 454 aa10.88□□□□□ -0.67
COL6A3-201ENST00000295550 NCBP1Q09161 790 aaKnown RBP10.88□□□□□ -0.67
COL6A3-201ENST00000295550 ADCK5Q3MIX3 580 aa10.88□□□□□ -0.67
COL6A3-201ENST00000295550 SYCE1Q8N0S2 351 aa10.88□□□□□ -0.67
COL6A3-201ENST00000295550 TRIML1Q8N9V2 468 aa10.88□□□□□ -0.67
COL6A3-201ENST00000295550 LPIN2Q92539 896 aa10.88□□□□□ -0.67
COL6A3-201ENST00000295550 SETDB2Q96T68 719 aa10.88□□□□□ -0.67
COL6A3-201ENST00000295550 KLHL14Q9P2G3 628 aa10.88□□□□□ -0.67
COL6A3-201ENST00000295550 TRAF5O00463 557 aa10.88□□□□□ -0.67
COL6A3-201ENST00000295550 PARP1P09874 1014 aaKnown RBP10.88□□□□□ -0.67
COL6A3-201ENST00000295550 FAM89AQ96GI7 184 aa10.88□□□□□ -0.67
COL6A3-201ENST00000295550 ZC4H2Q9NQZ6 224 aa10.88□□□□□ -0.67
COL6A3-201ENST00000295550 PCDHA7Q9UN72 937 aa10.88□□□□□ -0.67
COL6A3-201ENST00000295550 SCRN1Q12765 414 aa10.88□□□□□ -0.67
COL6A3-201ENST00000295550 DBN1Q16643 649 aa10.88□□□□□ -0.67
COL6A3-201ENST00000295550 KRT79Q5XKE5 535 aa10.88□□□□□ -0.67
COL6A3-201ENST00000295550 GOLGA5Q8TBA6 731 aa10.88□□□□□ -0.67
COL6A3-201ENST00000295550 CARD6Q9BX69 1037 aa10.88□□□□□ -0.67
COL6A3-201ENST00000295550 TAF5LO75529 589 aa10.87□□□□□ -0.67
COL6A3-201ENST00000295550 VPS41P49754 854 aa10.87□□□□□ -0.67
COL6A3-201ENST00000295550 ZNF174Q15697 407 aa10.87□□□□□ -0.67
COL6A3-201ENST00000295550 PHKBQ93100 1093 aa10.87□□□□□ -0.67
COL6A3-201ENST00000295550 ARMT1Q9H993 441 aa10.87□□□□□ -0.67
COL6A3-201ENST00000295550 ZNF532Q9HCE3 1301 aa10.87□□□□□ -0.67
COL6A3-201ENST00000295550 WDR46O15213 610 aaKnown RBP10.87□□□□□ -0.67
COL6A3-201ENST00000295550 BAG2O95816 211 aa10.87□□□□□ -0.67
COL6A3-201ENST00000295550 HSPD1P10809 573 aaKnown RBP10.87□□□□□ -0.67
COL6A3-201ENST00000295550 STX2P32856 288 aa10.87□□□□□ -0.67
COL6A3-201ENST00000295550 NCAPGQ9BPX3 1015 aa10.87□□□□□ -0.67
COL6A3-201ENST00000295550 LZTS2Q9BRK4 669 aa10.87□□□□□ -0.67
COL6A3-201ENST00000295550 RNF40O75150 1001 aa10.87□□□□□ -0.67
COL6A3-201ENST00000295550 PHEXP78562 749 aa10.87□□□□□ -0.67
COL6A3-201ENST00000295550 RAD51AP2Q09MP3 1159 aa10.87□□□□□ -0.67
COL6A3-201ENST00000295550 HAUS8Q9BT25 410 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms