RNA–Protein interactions for RNA: ENST00000269318.9

CCDC40-201, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2 BASIC

Gene CCDC40, Length 1,970 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-201ENST00000269318 TTC38Q5R3I4 469 aa19.04■□□□□ 0.64
CCDC40-201ENST00000269318 DAGLBQ8NCG7 672 aa19.04■□□□□ 0.64
CCDC40-201ENST00000269318 USP17L5A8MUK1 530 aa19.04■□□□□ 0.64
CCDC40-201ENST00000269318 SNHG28P0DPA3 235 aa19.04■□□□□ 0.64
CCDC40-201ENST00000269318 PDHBP11177 359 aa19.04■□□□□ 0.64
CCDC40-201ENST00000269318 CCDC93Q567U6 631 aa19.04■□□□□ 0.64
CCDC40-201ENST00000269318 KRBA2Q6ZNG9 492 aa19.04■□□□□ 0.64
CCDC40-201ENST00000269318 PIK3AP1Q6ZUJ8 805 aa19.04■□□□□ 0.64
CCDC40-201ENST00000269318 ELOA2Q8IYF1 753 aaPredicted RBP19.04■□□□□ 0.64
CCDC40-201ENST00000269318 PSMD1Q99460 953 aa19.04■□□□□ 0.64
CCDC40-201ENST00000269318 DHX36Q9H2U1 1008 aaKnown RBP19.04■□□□□ 0.64
CCDC40-201ENST00000269318 CPVLQ9H3G5 476 aa19.04■□□□□ 0.64
CCDC40-201ENST00000269318 DNAJC18Q9H819 358 aa19.04■□□□□ 0.64
CCDC40-201ENST00000269318 TUBE1Q9UJT0 475 aa19.04■□□□□ 0.64
CCDC40-201ENST00000269318 PSME4Q14997 1843 aa19.04■□□□□ 0.64
CCDC40-201ENST00000269318 KIF13BQ9NQT8 1826 aa19.03■□□□□ 0.64
CCDC40-201ENST00000269318 DPEP1P16444 411 aa19.03■□□□□ 0.64
CCDC40-201ENST00000269318 CLCN1P35523 988 aa19.03■□□□□ 0.64
CCDC40-201ENST00000269318 PLCB2Q00722 1185 aa19.03■□□□□ 0.64
CCDC40-201ENST00000269318 GALNT17Q6IS24 598 aa19.03■□□□□ 0.64
CCDC40-201ENST00000269318 RTKN2Q8IZC4 609 aa19.03■□□□□ 0.64
CCDC40-201ENST00000269318 CCDC148Q8NFR7 591 aa19.03■□□□□ 0.64
CCDC40-201ENST00000269318 CSRNP2Q9H175 543 aa19.03■□□□□ 0.64
CCDC40-201ENST00000269318 FAM13BQ9NYF5 915 aa19.03■□□□□ 0.64
CCDC40-201ENST00000269318 RBM5P52756 815 aaKnown RBP eCLIP19.02■□□□□ 0.64
CCDC40-201ENST00000269318 SH3BP5LQ7L8J4 393 aa19.02■□□□□ 0.64
CCDC40-201ENST00000269318 METTL16Q86W50 562 aaKnown RBP19.02■□□□□ 0.64
CCDC40-201ENST00000269318 CLEC10AQ8IUN9 316 aa19.02■□□□□ 0.64
CCDC40-201ENST00000269318 DHX40Q8IX18 779 aaKnown RBP19.02■□□□□ 0.64
CCDC40-201ENST00000269318 CEP57L1Q8IYX8 460 aa19.02■□□□□ 0.64
CCDC40-201ENST00000269318 DDTLA6NHG4 134 aaPredicted RBP19.02■□□□□ 0.64
CCDC40-201ENST00000269318 TTLL1O95922 423 aa19.02■□□□□ 0.64
CCDC40-201ENST00000269318 SLURP2P0DP57 97 aa19.02■□□□□ 0.64
CCDC40-201ENST00000269318 ATP2C1P98194 919 aaPredicted RBP19.02■□□□□ 0.64
CCDC40-201ENST00000269318 TCP10Q12799 353 aa19.02■□□□□ 0.64
CCDC40-201ENST00000269318 ZNF174Q15697 407 aa19.02■□□□□ 0.64
CCDC40-201ENST00000269318 DPCR1Q3MIW9 517 aa19.02■□□□□ 0.64
CCDC40-201ENST00000269318 HEATR3Q7Z4Q2 680 aa19.02■□□□□ 0.64
CCDC40-201ENST00000269318 LRRC47Q8N1G4 583 aaKnown RBP19.02■□□□□ 0.64
CCDC40-201ENST00000269318 FERMT2Q96AC1 680 aa19.02■□□□□ 0.64
CCDC40-201ENST00000269318 NLRP12P59046 1061 aa19.01■□□□□ 0.63
CCDC40-201ENST00000269318 MDM2Q00987 491 aaPredicted RBP19.01■□□□□ 0.63
CCDC40-201ENST00000269318 USP49Q70CQ1 688 aa19.01■□□□□ 0.63
CCDC40-201ENST00000269318 CNNM3Q8NE01 707 aa19.01■□□□□ 0.63
CCDC40-201ENST00000269318 BPIFA3Q9BQP9 254 aa19.01■□□□□ 0.63
CCDC40-201ENST00000269318 RIOX1Q9H6W3 641 aa19.01■□□□□ 0.63
CCDC40-201ENST00000269318 ZKSCAN5Q9Y2L8 839 aa19.01■□□□□ 0.63
CCDC40-201ENST00000269318 COL4A5P29400 1685 aa19.01■□□□□ 0.63
CCDC40-201ENST00000269318 PTMAP06454 111 aaKnown RBP19.01■□□□□ 0.63
CCDC40-201ENST00000269318 EIF6P56537 245 aaKnown RBP19.01■□□□□ 0.63
CCDC40-201ENST00000269318 ASPRV1Q53RT3 343 aa19.01■□□□□ 0.63
CCDC40-201ENST00000269318 CCDC17Q96LX7 622 aa19.01■□□□□ 0.63
CCDC40-201ENST00000269318 NAT10Q9H0A0 1025 aaKnown RBP19.01■□□□□ 0.63
CCDC40-201ENST00000269318 ZMYND12Q9H0C1 365 aa19.01■□□□□ 0.63
CCDC40-201ENST00000269318 PI4KBQ9UBF8 816 aa19.01■□□□□ 0.63
CCDC40-201ENST00000269318 CLIP2Q9UDT6 1046 aa19.01■□□□□ 0.63
CCDC40-201ENST00000269318 PCDHA6Q9UN73 950 aa19.01■□□□□ 0.63
CCDC40-201ENST00000269318 PCDHA8Q9Y5H6 950 aa19.01■□□□□ 0.63
CCDC40-201ENST00000269318 PTGDRQ13258 359 aa19■□□□□ 0.63
CCDC40-201ENST00000269318 PNOCQ13519 176 aa19■□□□□ 0.63
CCDC40-201ENST00000269318 CFAP100Q494V2 611 aa19■□□□□ 0.63
CCDC40-201ENST00000269318 PLA2G4DQ86XP0 818 aa19■□□□□ 0.63
CCDC40-201ENST00000269318 RRP36Q96EU6 259 aaKnown RBP19■□□□□ 0.63
CCDC40-201ENST00000269318 ATRNL1Q5VV63 1379 aa18.99■□□□□ 0.63
CCDC40-201ENST00000269318 GOLGA6L19H0YKK7 550 aa18.99■□□□□ 0.63
CCDC40-201ENST00000269318 POLR2DO15514 142 aaKnown RBP18.99■□□□□ 0.63
CCDC40-201ENST00000269318 FOXP4Q8IVH2 680 aaPredicted RBP18.99■□□□□ 0.63
CCDC40-201ENST00000269318 RASGRP4Q8TDF6 673 aa18.99■□□□□ 0.63
CCDC40-201ENST00000269318 GOLGB1Q14789 3259 aaKnown RBP18.99■□□□□ 0.63
CCDC40-201ENST00000269318 FRMPD2Q68DX3 1309 aaPredicted RBP18.99■□□□□ 0.63
CCDC40-201ENST00000269318 BIN1O00499 593 aa18.99■□□□□ 0.63
CCDC40-201ENST00000269318 ZRSR1Q15695 479 aaKnown RBP18.99■□□□□ 0.63
CCDC40-201ENST00000269318 SARM1Q6SZW1 724 aa18.99■□□□□ 0.63
CCDC40-201ENST00000269318 PRMT6Q96LA8 375 aaPredicted RBP18.99■□□□□ 0.63
CCDC40-201ENST00000269318 PIGSQ96S52 555 aa18.99■□□□□ 0.63
CCDC40-201ENST00000269318 UBA5Q9GZZ9 404 aa18.99■□□□□ 0.63
CCDC40-201ENST00000269318 TDRD3Q9H7E2 651 aaKnown RBP18.99■□□□□ 0.63
CCDC40-201ENST00000269318 ACTN4O43707 911 aaKnown RBP18.98■□□□□ 0.63
CCDC40-201ENST00000269318 ZNF75DP51815 510 aa18.98■□□□□ 0.63
CCDC40-201ENST00000269318 TATDN1Q6P1N9 297 aa18.98■□□□□ 0.63
CCDC40-201ENST00000269318 RSBN1LQ6PCB5 846 aaPredicted RBP18.98■□□□□ 0.63
CCDC40-201ENST00000269318 C4orf32Q8N8J7 132 aa18.98■□□□□ 0.63
CCDC40-201ENST00000269318 GMLQ99445 158 aa18.98■□□□□ 0.63
CCDC40-201ENST00000269318 COL2A1P02458 1487 aaPredicted RBP18.98■□□□□ 0.63
CCDC40-201ENST00000269318 FAM196BA6NMK8 535 aa18.97■□□□□ 0.63
CCDC40-201ENST00000269318 FOXN1O15353 648 aa18.97■□□□□ 0.63
CCDC40-201ENST00000269318 ENTPD3O75355 529 aa18.97■□□□□ 0.63
CCDC40-201ENST00000269318 VIL1P09327 827 aaKnown RBP18.97■□□□□ 0.63
CCDC40-201ENST00000269318 MSNP26038 577 aaKnown RBP18.97■□□□□ 0.63
CCDC40-201ENST00000269318 ZNF543Q08ER8 600 aa18.97■□□□□ 0.63
CCDC40-201ENST00000269318 HOMER1Q86YM7 354 aa18.97■□□□□ 0.63
CCDC40-201ENST00000269318 AOPEPQ8N6M6 819 aa18.97■□□□□ 0.63
CCDC40-201ENST00000269318 CCDC12Q8WUD4 166 aaPredicted RBP18.97■□□□□ 0.63
CCDC40-201ENST00000269318 EPSTI1Q96J88 318 aa18.97■□□□□ 0.63
CCDC40-201ENST00000269318 ZNF277Q9NRM2 450 aaPredicted RBP18.97■□□□□ 0.63
CCDC40-201ENST00000269318 SEC63Q9UGP8 760 aaKnown RBP18.97■□□□□ 0.63
CCDC40-201ENST00000269318 SERTAD1Q9UHV2 236 aa18.97■□□□□ 0.63
CCDC40-201ENST00000269318 A0A087X0B3 334 aa18.97■□□□□ 0.63
CCDC40-201ENST00000269318 CCDC194A0A1B0GVG4 234 aa18.97■□□□□ 0.63
CCDC40-201ENST00000269318 BECN2A8MW95 431 aa18.97■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms