RNA–Protein interactions for RNA: ENST00000265745.13

VPS41-201, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-201ENST00000265745 MYO5AQ9Y4I1 1855 aaKnown RBP11.66□□□□□ -0.54
VPS41-201ENST00000265745 CEP290O15078 2479 aa11.65□□□□□ -0.54
VPS41-201ENST00000265745 ERC2O15083 957 aa11.65□□□□□ -0.54
VPS41-201ENST00000265745 EVI5O60447 810 aa11.65□□□□□ -0.54
VPS41-201ENST00000265745 FLOT1O75955 427 aa11.65□□□□□ -0.54
VPS41-201ENST00000265745 IGHA2P01877 340 aa11.65□□□□□ -0.54
VPS41-201ENST00000265745 WDR78Q5VTH9 848 aa11.65□□□□□ -0.54
VPS41-201ENST00000265745 LHX8Q68G74 356 aa11.65□□□□□ -0.54
VPS41-201ENST00000265745 LARP6Q9BRS8 491 aaKnown RBP11.65□□□□□ -0.54
VPS41-201ENST00000265745 NBPF3Q9H094 633 aa11.65□□□□□ -0.54
VPS41-201ENST00000265745 SPATC1LQ9H0A9 340 aa11.65□□□□□ -0.54
VPS41-201ENST00000265745 FLRT1Q9NZU1 646 aa11.65□□□□□ -0.54
VPS41-201ENST00000265745 IVNS1ABPQ9Y6Y0 642 aa11.65□□□□□ -0.54
VPS41-201ENST00000265745 MINDY4BA8MYZ0 360 aa11.64□□□□□ -0.55
VPS41-201ENST00000265745 PATL2C9JE40 543 aaKnown RBP11.64□□□□□ -0.55
VPS41-201ENST00000265745 M0R2C6 588 aa11.64□□□□□ -0.55
VPS41-201ENST00000265745 WDR46O15213 610 aaKnown RBP11.64□□□□□ -0.55
VPS41-201ENST00000265745 GPAA1O43292 621 aa11.64□□□□□ -0.55
VPS41-201ENST00000265745 STRNO43815 780 aa11.64□□□□□ -0.55
VPS41-201ENST00000265745 GNAT2P19087 354 aa11.64□□□□□ -0.55
VPS41-201ENST00000265745 ERCC3P19447 782 aa11.64□□□□□ -0.55
VPS41-201ENST00000265745 CCND3P30281 292 aaPredicted RBP11.64□□□□□ -0.55
VPS41-201ENST00000265745 FXR1P51114 621 aaKnown RBP eCLIP11.64□□□□□ -0.55
VPS41-201ENST00000265745 LRRFIP1Q32MZ4 808 aaKnown RBP11.64□□□□□ -0.55
VPS41-201ENST00000265745 MFSD14CQ5VZR4 134 aa11.64□□□□□ -0.55
VPS41-201ENST00000265745 CHRDL2Q6WN34 429 aa11.64□□□□□ -0.55
VPS41-201ENST00000265745 SHCBP1Q8NEM2 672 aa11.64□□□□□ -0.55
VPS41-201ENST00000265745 NPLOC4Q8TAT6 608 aa11.64□□□□□ -0.55
VPS41-201ENST00000265745 ATG4CQ96DT6 458 aa11.64□□□□□ -0.55
VPS41-201ENST00000265745 CRBNQ96SW2 442 aa11.64□□□□□ -0.55
VPS41-201ENST00000265745 EPB41L4AQ9HCS5 686 aaPredicted RBP11.64□□□□□ -0.55
VPS41-201ENST00000265745 PCDH10Q9P2E7 1040 aa11.64□□□□□ -0.55
VPS41-201ENST00000265745 ADAMTS5Q9UNA0 930 aa11.64□□□□□ -0.55
VPS41-201ENST00000265745 FOCADQ5VW36 1801 aa11.63□□□□□ -0.55
VPS41-201ENST00000265745 APPP05067 770 aa11.63□□□□□ -0.55
VPS41-201ENST00000265745 MX1P20591 662 aa11.63□□□□□ -0.55
VPS41-201ENST00000265745 RASA1P20936 1047 aa11.63□□□□□ -0.55
VPS41-201ENST00000265745 PDE4AP27815 886 aa11.63□□□□□ -0.55
VPS41-201ENST00000265745 ATP2B2Q01814 1243 aa11.63□□□□□ -0.55
VPS41-201ENST00000265745 STK11IPQ8N1F8 1099 aa11.63□□□□□ -0.55
VPS41-201ENST00000265745 PIP4P2Q8N4L2 257 aa11.63□□□□□ -0.55
VPS41-201ENST00000265745 SEC62Q99442 399 aaKnown RBP11.63□□□□□ -0.55
VPS41-201ENST00000265745 PRO3102Q9H379 93 aa11.63□□□□□ -0.55
VPS41-201ENST00000265745 MROH8Q9H579 483 aa11.63□□□□□ -0.55
VPS41-201ENST00000265745 MKNK2Q9HBH9 465 aa11.63□□□□□ -0.55
VPS41-201ENST00000265745 RBM27Q9P2N5 1060 aaKnown RBP11.63□□□□□ -0.55
VPS41-201ENST00000265745 COBLO75128 1261 aa11.62□□□□□ -0.55
VPS41-201ENST00000265745 ADORA2AP29274 412 aa11.62□□□□□ -0.55
VPS41-201ENST00000265745 TDO2P48775 406 aa11.62□□□□□ -0.55
VPS41-201ENST00000265745 HDAC1Q13547 482 aaPredicted RBP11.62□□□□□ -0.55
VPS41-201ENST00000265745 PLS1Q14651 629 aa11.62□□□□□ -0.55
VPS41-201ENST00000265745 TMEM132BQ14DG7 1078 aa11.62□□□□□ -0.55
VPS41-201ENST00000265745 ZMYM1Q5SVZ6 1142 aa11.62□□□□□ -0.55
VPS41-201ENST00000265745 ANKRD45Q5TZF3 282 aa11.62□□□□□ -0.55
VPS41-201ENST00000265745 DPP9Q86TI2 863 aa11.62□□□□□ -0.55
VPS41-201ENST00000265745 IFNL3Q8IZI9 196 aa11.62□□□□□ -0.55
VPS41-201ENST00000265745 ABRAQ8N0Z2 381 aa11.62□□□□□ -0.55
VPS41-201ENST00000265745 FSD1Q9BTV5 496 aa11.62□□□□□ -0.55
VPS41-201ENST00000265745 C11orf49Q9H6J7 331 aa11.62□□□□□ -0.55
VPS41-201ENST00000265745 GOPCQ9HD26 462 aa11.62□□□□□ -0.55
VPS41-201ENST00000265745 FBXO28Q9NVF7 368 aa11.62□□□□□ -0.55
VPS41-201ENST00000265745 NYAP2Q9P242 653 aa11.62□□□□□ -0.55
VPS41-201ENST00000265745 DOCK3Q8IZD9 2030 aa11.62□□□□□ -0.55
VPS41-201ENST00000265745 SALL3Q9BXA9 1300 aa11.61□□□□□ -0.55
VPS41-201ENST00000265745 CDK5RAP2Q96SN8 1893 aa11.61□□□□□ -0.55
VPS41-201ENST00000265745 RANBP2P49792 3224 aaKnown RBP11.61□□□□□ -0.55
VPS41-201ENST00000265745 IGKV6D-41A0A0C4DH26 115 aa11.61□□□□□ -0.55
VPS41-201ENST00000265745 COL6A1P12109 1028 aa11.61□□□□□ -0.55
VPS41-201ENST00000265745 CYP2C19P33261 490 aa11.61□□□□□ -0.55
VPS41-201ENST00000265745 MFSD10Q14728 455 aa11.61□□□□□ -0.55
VPS41-201ENST00000265745 OLFML2BQ68BL8 750 aa11.61□□□□□ -0.55
VPS41-201ENST00000265745 NCAPG2Q86XI2 1143 aa11.61□□□□□ -0.55
VPS41-201ENST00000265745 ZNF444Q8N0Y2 327 aaPredicted RBP11.61□□□□□ -0.55
VPS41-201ENST00000265745 TRPV1Q8NER1 839 aa11.61□□□□□ -0.55
VPS41-201ENST00000265745 NACAP1Q9BZK3 213 aa11.61□□□□□ -0.55
VPS41-201ENST00000265745 ZNF287Q9HBT7 754 aa11.61□□□□□ -0.55
VPS41-201ENST00000265745 STAP2Q9UGK3 403 aa11.61□□□□□ -0.55
VPS41-201ENST00000265745 PPP1R9AQ9ULJ8 1098 aa11.61□□□□□ -0.55
VPS41-201ENST00000265745 ROBO3Q96MS0 1386 aa11.61□□□□□ -0.55
VPS41-201ENST00000265745 PFASO15067 1338 aa11.6□□□□□ -0.55
VPS41-201ENST00000265745 DDX60LQ5H9U9 1706 aaKnown RBP11.6□□□□□ -0.55
VPS41-201ENST00000265745 ATAD5Q96QE3 1844 aa11.6□□□□□ -0.55
VPS41-201ENST00000265745 TRIOBPQ9H2D6 2365 aa11.6□□□□□ -0.55
VPS41-201ENST00000265745 F5H6K3 240 aa11.6□□□□□ -0.55
VPS41-201ENST00000265745 VWA5AO00534 786 aa11.6□□□□□ -0.55
VPS41-201ENST00000265745 RAD21O60216 631 aa11.6□□□□□ -0.55
VPS41-201ENST00000265745 PRDM1O75626 825 aa11.6□□□□□ -0.55
VPS41-201ENST00000265745 SLC25A27O95847 323 aa11.6□□□□□ -0.55
VPS41-201ENST00000265745 FCER1AP12319 257 aa11.6□□□□□ -0.55
VPS41-201ENST00000265745 STAT3P40763 770 aa11.6□□□□□ -0.55
VPS41-201ENST00000265745 KLRC3Q07444 240 aa11.6□□□□□ -0.55
VPS41-201ENST00000265745 FAM83BQ5T0W9 1011 aa11.6□□□□□ -0.55
VPS41-201ENST00000265745 REPS2Q8NFH8 660 aa11.6□□□□□ -0.55
VPS41-201ENST00000265745 MKL1Q969V6 931 aa11.6□□□□□ -0.55
VPS41-201ENST00000265745 PHF12Q96QT6 1004 aa11.6□□□□□ -0.55
VPS41-201ENST00000265745 SLC5A4Q9NY91 659 aa11.6□□□□□ -0.55
VPS41-201ENST00000265745 MTMR4Q9NYA4 1195 aa11.6□□□□□ -0.55
VPS41-201ENST00000265745 CLIP2Q9UDT6 1046 aa11.6□□□□□ -0.55
VPS41-201ENST00000265745 DDX20Q9UHI6 824 aaKnown RBP11.6□□□□□ -0.55
VPS41-201ENST00000265745 MYH1P12882 1939 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 131.2 ms