RNA–Protein interactions for RNA: ENST00000264010.8

CTCF-201, Transcript of CCCTC-binding factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTCF, Length 3,939 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-201ENST00000264010 LETM2Q2VYF4 491 aa18.36■□□□□ 0.53
CTCF-201ENST00000264010 C12orf60Q5U649 245 aa18.36■□□□□ 0.53
CTCF-201ENST00000264010 GJD4Q96KN9 370 aaPredicted RBP18.36■□□□□ 0.53
CTCF-201ENST00000264010 NUP88Q99567 741 aaPredicted RBP18.36■□□□□ 0.53
CTCF-201ENST00000264010 CTNND2Q9UQB3 1225 aa18.36■□□□□ 0.53
CTCF-201ENST00000264010 ROBO1Q9Y6N7 1651 aa18.36■□□□□ 0.53
CTCF-201ENST00000264010 WTIPA6NIX2 430 aaPredicted RBP18.36■□□□□ 0.53
CTCF-201ENST00000264010 PSMA7O14818 248 aa18.36■□□□□ 0.53
CTCF-201ENST00000264010 ARHGAP29Q52LW3 1261 aa18.36■□□□□ 0.53
CTCF-201ENST00000264010 UTP14CQ5TAP6 766 aaKnown RBP18.36■□□□□ 0.53
CTCF-201ENST00000264010 SRBD1Q8N5C6 995 aaKnown RBP18.36■□□□□ 0.53
CTCF-201ENST00000264010 ZNF622Q969S3 477 aaKnown RBP eCLIP18.36■□□□□ 0.531e-6■□□□□ 10.8
CTCF-201ENST00000264010 TJP1Q07157 1748 aa18.36■□□□□ 0.53
CTCF-201ENST00000264010 PSDA5PKW4 1024 aaPredicted RBP18.35■□□□□ 0.53
CTCF-201ENST00000264010 LONP1P36776 959 aaKnown RBP18.35■□□□□ 0.53
CTCF-201ENST00000264010 GNG11P61952 73 aa18.35■□□□□ 0.53
CTCF-201ENST00000264010 NONOQ15233 471 aaKnown RBP eCLIP18.35■□□□□ 0.53
CTCF-201ENST00000264010 SPATA1Q5VX52 437 aa18.35■□□□□ 0.53
CTCF-201ENST00000264010 CD209Q9NNX6 404 aa18.35■□□□□ 0.53
CTCF-201ENST00000264010 NHSL1Q5SYE7 1610 aa18.35■□□□□ 0.53
CTCF-201ENST00000264010 AKR1B15C9JRZ8 316 aaPredicted RBP18.35■□□□□ 0.53
CTCF-201ENST00000264010 CT47A1Q5JQC4 288 aaPredicted RBP18.35■□□□□ 0.53
CTCF-201ENST00000264010 TRIM47Q96LD4 638 aa18.35■□□□□ 0.53
CTCF-201ENST00000264010 BMP2KQ9NSY1 1161 aaPredicted RBP18.35■□□□□ 0.53
CTCF-201ENST00000264010 USP17L3A6NCW0 530 aa18.35■□□□□ 0.53
CTCF-201ENST00000264010 USP17L4A6NCW7 530 aa18.35■□□□□ 0.53
CTCF-201ENST00000264010 USP17L1Q7RTZ2 530 aa18.35■□□□□ 0.53
CTCF-201ENST00000264010 FOXN1O15353 648 aa18.34■□□□□ 0.53
CTCF-201ENST00000264010 TMC4Q7Z404 712 aa18.34■□□□□ 0.53
CTCF-201ENST00000264010 BLZF1Q9H2G9 400 aa18.34■□□□□ 0.53
CTCF-201ENST00000264010 EXOC1Q9NV70 894 aa18.34■□□□□ 0.53
CTCF-201ENST00000264010 GTPBP6O43824 516 aaPredicted RBP18.34■□□□□ 0.53
CTCF-201ENST00000264010 TOB1P50616 345 aaPredicted RBP18.34■□□□□ 0.53
CTCF-201ENST00000264010 NBPF11Q86T75 865 aa18.34■□□□□ 0.53
CTCF-201ENST00000264010 SH3GLB2Q9NR46 395 aa18.34■□□□□ 0.53
CTCF-201ENST00000264010 SPATA31A6Q5VVP1 1343 aa18.34■□□□□ 0.53
CTCF-201ENST00000264010 KIF5CO60282 957 aa18.34■□□□□ 0.53
CTCF-201ENST00000264010 ELOA2Q8IYF1 753 aaPredicted RBP18.34■□□□□ 0.53
CTCF-201ENST00000264010 IGSF22Q8N9C0 903 aa18.34■□□□□ 0.53
CTCF-201ENST00000264010 PAGE5Q96GU1 130 aa18.34■□□□□ 0.53
CTCF-201ENST00000264010 GOLGA8HP0CJ92 632 aa18.33■□□□□ 0.53
CTCF-201ENST00000264010 PAK1Q13153 545 aa18.33■□□□□ 0.53
CTCF-201ENST00000264010 INF2Q27J81 1249 aa18.33■□□□□ 0.53
CTCF-201ENST00000264010 VSTM4Q8IW00 320 aa18.33■□□□□ 0.53
CTCF-201ENST00000264010 PLIN2Q99541 437 aa18.33■□□□□ 0.53
CTCF-201ENST00000264010 FAM205CA6NFA0 338 aa18.33■□□□□ 0.52
CTCF-201ENST00000264010 FEZ1Q99689 392 aa18.33■□□□□ 0.52
CTCF-201ENST00000264010 SMCO2A6NFE2 343 aa18.32■□□□□ 0.52
CTCF-201ENST00000264010 SSBP05455 408 aaKnown RBP eCLIP18.32■□□□□ 0.52
CTCF-201ENST00000264010 ASIC1P78348 528 aa18.32■□□□□ 0.52
CTCF-201ENST00000264010 GPSM2P81274 684 aa18.32■□□□□ 0.52
CTCF-201ENST00000264010 BMS1Q14692 1282 aaKnown RBP18.32■□□□□ 0.52
CTCF-201ENST00000264010 DPP8Q6V1X1 898 aaPredicted RBP18.32■□□□□ 0.52
CTCF-201ENST00000264010 ERO1AQ96HE7 468 aa18.32■□□□□ 0.52
CTCF-201ENST00000264010 PARP3Q9Y6F1 533 aa18.32■□□□□ 0.52
CTCF-201ENST00000264010 PRR29P0C7W0 189 aa18.32■□□□□ 0.52
CTCF-201ENST00000264010 PAPPAQ13219 1627 aa18.32■□□□□ 0.52
CTCF-201ENST00000264010 CCNT1O60563 726 aaKnown RBP18.32■□□□□ 0.52
CTCF-201ENST00000264010 CCDC175P0C221 793 aa18.32■□□□□ 0.52
CTCF-201ENST00000264010 CDK8P49336 464 aa18.32■□□□□ 0.52
CTCF-201ENST00000264010 ARL6IP4Q66PJ3 421 aaKnown RBP18.32■□□□□ 0.52
CTCF-201ENST00000264010 PRR5LQ6MZQ0 368 aa18.32■□□□□ 0.52
CTCF-201ENST00000264010 TXNRD3Q86VQ6 643 aa18.32■□□□□ 0.52
CTCF-201ENST00000264010 RASGRP4Q8TDF6 673 aa18.32■□□□□ 0.52
CTCF-201ENST00000264010 DDX52Q9Y2R4 599 aaKnown RBP eCLIP18.32■□□□□ 0.52
CTCF-201ENST00000264010 AFF2P51816 1311 aa18.32■□□□□ 0.52
CTCF-201ENST00000264010 CNTNAP5Q8WYK1 1306 aa18.32■□□□□ 0.52
CTCF-201ENST00000264010 STRCQ7RTU9 1775 aa18.32■□□□□ 0.52
CTCF-201ENST00000264010 GRM4Q14833 912 aa18.31■□□□□ 0.52
CTCF-201ENST00000264010 CNGA4Q8IV77 575 aa18.31■□□□□ 0.52
CTCF-201ENST00000264010 FAM114A1Q8IWE2 563 aa18.31■□□□□ 0.52
CTCF-201ENST00000264010 PHACTR2O75167 634 aa18.31■□□□□ 0.52
CTCF-201ENST00000264010 KRT18P05783 430 aaKnown RBP18.31■□□□□ 0.52
CTCF-201ENST00000264010 GRIN1Q05586 938 aa18.31■□□□□ 0.52
CTCF-201ENST00000264010 NEK11Q8NG66 645 aa18.31■□□□□ 0.52
CTCF-201ENST00000264010 GLI3P10071 1580 aa18.31■□□□□ 0.52
CTCF-201ENST00000264010 JAKMIP3Q5VZ66 844 aa18.31■□□□□ 0.52
CTCF-201ENST00000264010 QTRT2Q9H974 415 aaKnown RBP18.31■□□□□ 0.52
CTCF-201ENST00000264010 GPCPD1Q9NPB8 672 aa18.31■□□□□ 0.52
CTCF-201ENST00000264010 TTF2Q9UNY4 1162 aaKnown RBP18.31■□□□□ 0.52
CTCF-201ENST00000264010 FAM237AA0A1B0GTK4 181 aa18.3■□□□□ 0.52
CTCF-201ENST00000264010 PPEF1O14829 653 aaPredicted RBP18.3■□□□□ 0.52
CTCF-201ENST00000264010 CCT6AP40227 531 aaKnown RBP18.3■□□□□ 0.52
CTCF-201ENST00000264010 MTIF2P46199 727 aaKnown RBP18.3■□□□□ 0.52
CTCF-201ENST00000264010 SLC44A5Q8NCS7 719 aa18.3■□□□□ 0.52
CTCF-201ENST00000264010 NKX2-3Q8TAU0 364 aa18.3■□□□□ 0.52
CTCF-201ENST00000264010 TMEM47Q9BQJ4 181 aa18.3■□□□□ 0.52
CTCF-201ENST00000264010 ZNF219Q9P2Y4 722 aaPredicted RBP18.3■□□□□ 0.52
CTCF-201ENST00000264010 ATP2C1P98194 919 aaPredicted RBP18.3■□□□□ 0.52
CTCF-201ENST00000264010 MORC3Q14149 939 aa18.3■□□□□ 0.52
CTCF-201ENST00000264010 REXO1Q8N1G1 1221 aaKnown RBP18.3■□□□□ 0.52
CTCF-201ENST00000264010 LRRC27Q9C0I9 530 aa18.3■□□□□ 0.52
CTCF-201ENST00000264010 FGFR1OPO95684 399 aaKnown RBP18.3■□□□□ 0.52
CTCF-201ENST00000264010 EIF6P56537 245 aaKnown RBP18.3■□□□□ 0.52
CTCF-201ENST00000264010 FKBP15Q5T1M5 1219 aa18.3■□□□□ 0.52
CTCF-201ENST00000264010 NELFBQ8WX92 580 aa18.3■□□□□ 0.52
CTCF-201ENST00000264010 PPP1R13BQ96KQ4 1090 aa18.3■□□□□ 0.52
CTCF-201ENST00000264010 MAPK8IP1Q9UQF2 711 aa18.3■□□□□ 0.52
CTCF-201ENST00000264010 TOGARAM1Q9Y4F4 1720 aa18.3■□□□□ 0.52
CTCF-201ENST00000264010 AHDC1Q5TGY3 1603 aaPredicted RBP18.3■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms